MD04G1212400.v1.1

Gibberellin receptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29670552 .. 29673106
2555 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1212400.v1.1.491

Sequence Viewer

Length: 1035 bp
ATGTCTGGGGGCAATGAAGTCAACGTTAGTGAATCCAGGATGGTGGTTCCATTGAATACATGGGTCCTCATCTCCAATTTTAAGCTGTCATACAATCTTCTGCGCCGCCCTGACGGGACCTTCAACCGCCACTTGGCAGAATTCCTTGACCGGAAAGTGCCAGCCAATTCTAACCCTGTTGATGGGGTTGTCTCGTTTGATGTCATCATCGACCGTGAAACTAGCCTGCTCAGTCGAATCTATCATCCGGACGATGCTAATCTATCCCCGCTGAACATTGTTGATCCTGAGAGAGCGGTGAGCCAAGAGGTTCTTCCTGTCATAGTTTTCTTCCATGGTGGAAGCTTTGCACACTCCTCTTCAAACAGCGGTATATATGATATTCTGTGTCGCCGACTAGTTGGTATCTGCAAGGCTGTAGTGGTCTCTGTGAATTATCGTAGGGCTCCTGAAAATCGCTATCCATGTGCCTATGATGATGGATGGACAGCCCTGAGGTGGGTGAACTCTAGATCATGGCTTAAAAGTACAAGGGACTCAAACGTTCATATCTATCTAGCTGGCGATAGCTCTGGCGGGAACATTGTACACAATGTTGCTTTAAGAGCAGCAGAATCTGGAATCAATGTACTGGGAAATATACTGCTCAACCCTATGTTTGGTGGGCAGGAGCGGACTGAATCCGAGTTGCGATTGGATGGGAAATACTTTGTAACCATCCAAGACCGGGACTGGTACTGGAGAGCTTTTCTCCCTGATGGTGAAGATAGGGACCATCCAGCATGTAACCCATTTGGTCCCCGTGGTCAAAGCCTCGAAGCTGTCAAGTTCCCGAAGAGCCTTGTTGTGGTGGCTGGTTTGGATCTTGTTCAGGACTGGCAATTGGCTTACGCCAGAGGGCTCGAGAGTGCTGGCAAAAACATCAAACTTATGTATCTTGAGCAGGCCACAATTGGTTTCTACCTGTTGCCGAATAATGAGCATTTCTACACCGTGATGGATGAGATAAGTAAATTCGTGCTCTCCGATAATTGA

Protein Analysis

345

Amino Acids

38.63

Weight (kDa)

5.78

Isoelectric Point (pI)

49.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 91 - 149 3.4e-07 Carboxylesterase family
BD-FAE PF20434 101 - 205 1.2e-09 BD-FAE
Abhydrolase_3 PF07859 108 - 321 6.2e-58 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009868)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 296, 673
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 7 cut(s) 106, 127, 269, 296, 369, 576, 673
AclI AACGTT 2 cut(s) 24, 543
AclWI GGATC 2 cut(s) 278, 870
AcsI RAATTY 2 cut(s) 140, 1013
AfaI GTAC 4 cut(s) 529, 588, 630, 737
AfiI CCNNNNNNNGG 7 cut(s) 133, 182, 498, 499, 659, 727, 847
AgsI TTSAA 3 cut(s) 55, 124, 363
AhlI ACTAGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 6 cut(s) 85, 345, 560, 570, 746, 821
AluI AGCT 6 cut(s) 85, 345, 560, 570, 746, 821
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 2 cut(s) 196, 430
AlwI GGATC 2 cut(s) 278, 870
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 1 cut(s) 902
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 945
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 140, 1013
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 4 cut(s) 64, 117, 772, 797
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 3 cut(s) 310, 514, 773
AvaI CYCGRG 1 cut(s) 902
AvaII GGWCC 4 cut(s) 64, 117, 772, 797
AxyI CCTNAGG 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 917, 950
BanII GRGCYC 2 cut(s) 448, 903
Bbv12I GWGCWC 1 cut(s) 1023
BbvI GCAGC 1 cut(s) 620
BccI CCATC 9 cut(s) 34, 176, 473, 477, 692, 725, 752, 783, 991
BciT130I CCWGG 1 cut(s) 37
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 2 cut(s) 196, 430
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 4 cut(s) 222, 398, 510, 557
BfmI CTRYAG 1 cut(s) 417
BisI GCNGC 2 cut(s) 106, 609
BlsI GCNGC 2 cut(s) 107, 610
Bme1390I CCNGG 2 cut(s) 37, 728
Bme18I GGWCC 4 cut(s) 64, 117, 772, 797
BmeT110I CYCGRG 1 cut(s) 902
BmgT120I GGNCC 4 cut(s) 64, 117, 772, 797
BmiI GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
BmrFI CCNGG 2 cut(s) 37, 728
BmrI ACTGGG 1 cut(s) 641
BmsI GCATC 1 cut(s) 244
BmuI ACTGGG 1 cut(s) 641
BplI GAGNNNNNCTC 2 cut(s) 735, 767
BpmI CTGGAG 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 1 cut(s) 728
BsaBI GATNNNNATC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 334, 802
BsaWI WCCGGW 2 cut(s) 150, 247
Bsc4I CCNNNNNNNGG 7 cut(s) 133, 182, 498, 499, 659, 727, 847
Bse1I ACTGG 4 cut(s) 636, 737, 743, 881
Bse21I CCTNAGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 19
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 334, 802
BseGI GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 7 cut(s) 133, 182, 498, 499, 659, 727, 847
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 244, 279, 485
BseNI ACTGG 4 cut(s) 636, 737, 743, 881
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 620
Bsh1285I CGRYCG 1 cut(s) 214
BshFI GGCC 1 cut(s) 947
BsiEI CGRYCG 1 cut(s) 214
BsiHKAI GWGCWC 1 cut(s) 1023
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 3 cut(s) 151, 248, 727
BslFI GGGAC 5 cut(s) 130, 548, 743, 783, 785
BslI CCNNNNNNNGG 7 cut(s) 133, 182, 498, 499, 659, 727, 847
BsmAI GTCTC 2 cut(s) 196, 430
BsmFI GGGAC 5 cut(s) 130, 548, 743, 783, 785
BsnI GGCC 1 cut(s) 947
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 1 cut(s) 902
Bsp1286I GDGCHC 3 cut(s) 448, 903, 1023
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 283, 512, 862
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 7 cut(s) 106, 127, 269, 296, 369, 576, 673
BspANI GGCC 1 cut(s) 947
BspCNI CTCAG 3 cut(s) 243, 280, 486
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
BspPI GGATC 2 cut(s) 278, 870
BspQI GCTCTTC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 430
BsrBI CCGCTC 2 cut(s) 296, 673
BsrDI GCAATG 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 4 cut(s) 636, 737, 743, 881
BssECI CCNNGG 2 cut(s) 334, 802
BssMI GATC 3 cut(s) 283, 512, 862
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 2 cut(s) 215, 994
Bst6I CTCTTC 2 cut(s) 364, 830
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 5 cut(s) 162, 227, 562, 913, 945
BstDEI CTNAG 3 cut(s) 230, 288, 494
BstDSI CCRYGG 2 cut(s) 334, 802
BstF5I GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 286, 515, 865
BstMAI GTCTC 2 cut(s) 196, 430
BstMBI GATC 3 cut(s) 283, 512, 862
BstMCI CGRYCG 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 35, 726
BstSFI CTRYAG 1 cut(s) 417
BstV1I GCAGC 1 cut(s) 620
BstX2I RGATCY 1 cut(s) 862
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 862
Bsu36I CCTNAGG 1 cut(s) 494
BsuRI GGCC 1 cut(s) 947
BtgI CCRYGG 2 cut(s) 334, 802
BtsCI GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
Cac8I GCNNGC 5 cut(s) 162, 227, 562, 913, 945
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 64, 117, 772, 797
Csp6I GTAC 4 cut(s) 528, 587, 629, 736
CviAII CATG 5 cut(s) 60, 335, 465, 516, 783
CviQI GTAC 4 cut(s) 528, 587, 629, 736
DdeI CTNAG 3 cut(s) 230, 288, 494
DpnI GATC 3 cut(s) 285, 514, 864
DpnII GATC 3 cut(s) 283, 512, 862
Eam1104I CTCTTC 2 cut(s) 364, 830
EarI CTCTTC 2 cut(s) 364, 830
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 448, 903
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 4 cut(s) 64, 117, 772, 797
Eco81I CCTNAGG 1 cut(s) 494
Eco88I CYCGRG 1 cut(s) 902
EcoO109I RGGNCCY 2 cut(s) 64, 117
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 448, 903
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 63, 338, 468, 519, 786
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 5 cut(s) 130, 548, 743, 783, 785
FatI CATG 5 cut(s) 59, 334, 464, 515, 782
FauI CCCGC 2 cut(s) 276, 569
Fnu4HI GCNGC 2 cut(s) 106, 609
FokI GGATG 7 cut(s) 52, 231, 495, 704, 710, 762, 1013
FriOI GRGCYC 2 cut(s) 448, 903
Fsp4HI GCNGC 2 cut(s) 106, 609
FspBI CTAG 4 cut(s) 222, 398, 510, 557
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 106, 609
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 1 cut(s) 947
HapII CCGG 3 cut(s) 151, 248, 727
HhaI GCGC 1 cut(s) 105
Hin1II CATG 5 cut(s) 63, 338, 468, 519, 786
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 6 cut(s) 32, 237, 536, 614, 621, 680
HpaII CCGG 3 cut(s) 151, 248, 727
HphI GGTGA 3 cut(s) 310, 514, 773
Hpy166II GTNNAC 3 cut(s) 22, 505, 589
Hpy188I TCNGA 2 cut(s) 685, 1027
Hpy188III TCNNGA 9 cut(s) 248, 287, 449, 510, 618, 832, 872, 904, 938
Hpy8I GTNNAC 3 cut(s) 22, 505, 589
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 215, 994
HpyCH4IV ACGT 2 cut(s) 24, 543
HpyCH4V TGCA 2 cut(s) 350, 411
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 3 cut(s) 230, 288, 494
HpySE526I ACGT 2 cut(s) 24, 543
Hsp92II CATG 5 cut(s) 63, 338, 468, 519, 786
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 283, 512, 862
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 2 cut(s) 451, 670
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 1 cut(s) 244
MaeI CTAG 4 cut(s) 222, 398, 510, 557
MaeII ACGT 2 cut(s) 24, 543
MaeIII GTNAC 2 cut(s) 712, 785
MalI GATC 3 cut(s) 285, 514, 864
MbiI CCGCTC 2 cut(s) 296, 673
MboI GATC 3 cut(s) 283, 512, 862
MboII GAAGA 6 cut(s) 89, 305, 322, 351, 776, 847
MfeI CAATTG 2 cut(s) 881, 951
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 3 cut(s) 448, 903, 1023
MluCI AATT 8 cut(s) 76, 140, 166, 433, 881, 951, 1013, 1030
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 6 cut(s) 77, 301, 367, 489, 824, 890
MroI TCCGGA 1 cut(s) 247
MseI TTAA 3 cut(s) 81, 522, 602
MslI CAYNNNNRTG 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 271, 369
MspI CCGG 3 cut(s) 151, 248, 727
MspR9I CCNGG 2 cut(s) 37, 728
MunI CAATTG 2 cut(s) 881, 951
MvaI CCWGG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 605
NciI CCSGG 1 cut(s) 728
NcoI CCATGG 1 cut(s) 334
NdeII GATC 3 cut(s) 283, 512, 862
NlaIII CATG 5 cut(s) 63, 338, 468, 519, 786
NlaIV GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
NspI RCATGY 1 cut(s) 786
PaeR7I CTCGAG 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 830
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PfeI GAWTC 5 cut(s) 32, 237, 614, 621, 680
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 2 cut(s) 107, 610
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 2 cut(s) 64, 117
Psp1406I AACGTT 2 cut(s) 24, 543
Psp5II RGGWCCY 2 cut(s) 64, 117
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
PspPI GGNCC 4 cut(s) 64, 117, 772, 797
PspPPI RGGWCCY 2 cut(s) 64, 117
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 4 cut(s) 529, 588, 630, 737
RsaNI GTAC 4 cut(s) 528, 587, 629, 736
RseI CAYNNNNRTG 1 cut(s) 995
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 3 cut(s) 81, 522, 602
SatI GCNGC 2 cut(s) 106, 609
Sau3AI GATC 3 cut(s) 283, 512, 862
Sau96I GGNCC 4 cut(s) 64, 117, 772, 797
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 2 cut(s) 37, 728
SduI GDGCHC 3 cut(s) 448, 903, 1023
SfaNI GCATC 1 cut(s) 244
SfcI CTRYAG 1 cut(s) 417
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 4 cut(s) 64, 117, 772, 797
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 995
SmlI CTYRAG 2 cut(s) 902, 938
SmoI CTYRAG 2 cut(s) 902, 938
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 8 cut(s) 76, 140, 166, 433, 881, 951, 1013, 1030
SsiI CCGC 7 cut(s) 106, 127, 269, 296, 369, 576, 673
SspMI CTAG 4 cut(s) 222, 398, 510, 557
StyD4I CCNGG 2 cut(s) 35, 726
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 215, 994
TaiI ACGT 2 cut(s) 27, 546
TaqI TCGA 4 cut(s) 210, 235, 816, 903
TasI AATT 8 cut(s) 76, 140, 166, 433, 881, 951, 1013, 1030
TatI WGTACW 3 cut(s) 527, 586, 628
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 5 cut(s) 32, 237, 614, 621, 680
Tru1I TTAA 3 cut(s) 81, 522, 602
Tru9I TTAA 3 cut(s) 81, 522, 602
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 30, 536
VpaK11BI GGWCC 4 cut(s) 64, 117, 772, 797
XapI RAATTY 2 cut(s) 140, 1013
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 1 cut(s) 57
XhoI CTCGAG 1 cut(s) 902
XspI CTAG 4 cut(s) 222, 398, 510, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.