pycom04g18850

Gibberellin receptor

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Reverse (-)
20715692 .. 20717333
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18850.1

Sequence Viewer

Length: 1035 bp
ATGTCTGGGGGCAATGAAGTCAACGTTAGTGAATCCAGGATGGTGGTTCCGTTGAATACATGGGTCCTCATCTCCAATTTTAAGCTGTCATACAATCTTCTGCGCCGCCCTGACGGGACCTTCAACCGCCACTTGGCGGAATTCCTTGACCGGAAAGTGCCAGCCAATACTAACCCTGTTGATGGGGTTGTCTCGTTTGATGTCATCATTGACCGCGAAACTAGCCTGCTCAGTCGAATCTATCATCCGGACAATGCTAATCTATCCCCGCTGAACATTGTTGATCCTGAGAGAGCGGTGAGCCAAGAGATTCTTCCTGTCATAATTTTCTTCCATGGTGGAAGCTTTGCACACTCCTCTTCAAACAGCGGTATATATGATGTTCTGTGTCGCCGACTAGTTGGTATCTGCAAGGCTGTAGTGGTCTCTGTGAATTATCGTAGGGCTCCTGAAAATCGCTATCCATGTGCCTATGATGATGGATGGACAGCCCTGAGGTGGGTGAACTCTAGATCATGGCTTAAAAGTACAAGGGACTCAAACGTTCATATCTATCTAGCTGGCGATAGCTCTGGCGGGAACATTGTACACAATGTTGCTTTAAGAGCTGCAGAATCTGGAATCAATGTACTGGGAAATATACTGCTCAACCCTATGTTTGGTGGGCAGGAGCGGACTGAATCCGAGTTGCGATTGGATGGGAAATACTTTGTAACCATCCAAGACCGGGACTGGTACTGGAGAGCTTTTCTCCCTGATGGTGAAGATAGGGACCATCCAGCATGTAACCCGTTTGGTCCCCGGGGTCAAAGCCTCGAAGCTGTCAAGTTCCCGAAGAGCCTTGTTGTGGTGGCTGGTTTGGATCTTGTTCAGGACTGGCAATTGGCTTACGCTAGAGGGCTCGAGAGTGCTGGCAAAAACATCAAACTTCTGTATCTTGAGCAGGCCACAATTGGTTTCTACCTGTTGCCGAATAATGAGCATTTCTACACCGTGATGGATGAGATAAGTAAATTCGTGCTCTCCGACAATTGA

Protein Analysis

345

Amino Acids

38.64

Weight (kDa)

5.93

Isoelectric Point (pI)

49.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 91 - 149 1.3e-06 Carboxylesterase family
BD-FAE PF20434 101 - 205 1.1e-09 BD-FAE
Abhydrolase_3 PF07859 108 - 321 8.2e-58 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009868)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 296, 673
AccII CGCG 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 9 cut(s) 106, 127, 137, 214, 269, 296, 369, 576, 673
AclI AACGTT 2 cut(s) 24, 543
AclWI GGATC 2 cut(s) 278, 870
AcsI RAATTY 2 cut(s) 140, 1013
AfaI GTAC 4 cut(s) 529, 588, 630, 737
AfiI CCNNNNNNNGG 8 cut(s) 133, 136, 182, 498, 499, 659, 727, 847
AgsI TTSAA 3 cut(s) 55, 124, 363
AhlI ACTAGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 35
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 7 cut(s) 85, 345, 560, 570, 608, 746, 821
AluI AGCT 7 cut(s) 85, 345, 560, 570, 608, 746, 821
Alw21I GWGCWC 1 cut(s) 1023
Alw26I GTCTC 2 cut(s) 196, 430
AlwI GGATC 2 cut(s) 278, 870
AlwNI CAGNNNCTG 1 cut(s) 617
Ama87I CYCGRG 2 cut(s) 801, 902
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 945
ApeKI GCWGC 1 cut(s) 608
ApoI RAATTY 2 cut(s) 140, 1013
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 4 cut(s) 64, 117, 772, 797
AsuC2I CCSGG 3 cut(s) 728, 802, 803
AsuHPI GGTGA 3 cut(s) 310, 514, 773
AvaI CYCGRG 2 cut(s) 801, 902
AvaII GGWCC 4 cut(s) 64, 117, 772, 797
AxyI CCTNAGG 1 cut(s) 494
BaeI ACNNNNGTAYC 2 cut(s) 917, 950
BanII GRGCYC 2 cut(s) 448, 903
Bbv12I GWGCWC 1 cut(s) 1023
BbvI GCAGC 1 cut(s) 595
BccI CCATC 9 cut(s) 34, 176, 473, 477, 692, 725, 752, 783, 991
BciT130I CCWGG 1 cut(s) 37
BcnI CCSGG 3 cut(s) 728, 802, 803
BcoDI GTCTC 2 cut(s) 196, 430
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 5 cut(s) 222, 398, 510, 557, 894
BfmI CTRYAG 2 cut(s) 417, 609
BisI GCNGC 2 cut(s) 106, 609
BlsI GCNGC 2 cut(s) 107, 610
Bme1390I CCNGG 4 cut(s) 37, 728, 802, 803
Bme18I GGWCC 4 cut(s) 64, 117, 772, 797
BmeT110I CYCGRG 2 cut(s) 801, 902
BmgT120I GGNCC 4 cut(s) 64, 117, 772, 797
BmiI GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
BmrFI CCNGG 4 cut(s) 37, 728, 802, 803
BmrI ACTGGG 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 641
BplI GAGNNNNNCTC 2 cut(s) 735, 767
BpmI CTGGAG 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 959
BpuMI CCSGG 3 cut(s) 728, 802, 803
BsaI GGTCTC 1 cut(s) 430
BsaJI CCNNGG 4 cut(s) 334, 800, 801, 802
BsaWI WCCGGW 2 cut(s) 150, 247
Bsc4I CCNNNNNNNGG 8 cut(s) 133, 136, 182, 498, 499, 659, 727, 847
Bse1I ACTGG 4 cut(s) 636, 737, 743, 881
Bse21I CCTNAGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 19
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 4 cut(s) 334, 800, 801, 802
BseGI GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
BseLI CCNNNNNNNGG 8 cut(s) 133, 136, 182, 498, 499, 659, 727, 847
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 244, 279, 485
BseNI ACTGG 4 cut(s) 636, 737, 743, 881
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 595
Bsh1236I CGCG 1 cut(s) 216
BshFI GGCC 1 cut(s) 947
BsiHKAI GWGCWC 1 cut(s) 1023
BsiHKCI CYCGRG 2 cut(s) 801, 902
BsiSI CCGG 4 cut(s) 151, 248, 727, 802
BslFI GGGAC 5 cut(s) 130, 548, 743, 783, 785
BslI CCNNNNNNNGG 8 cut(s) 133, 136, 182, 498, 499, 659, 727, 847
BsmAI GTCTC 2 cut(s) 196, 430
BsmFI GGGAC 5 cut(s) 130, 548, 743, 783, 785
BsnI GGCC 1 cut(s) 947
Bso31I GGTCTC 1 cut(s) 430
BsoBI CYCGRG 2 cut(s) 801, 902
Bsp1286I GDGCHC 3 cut(s) 448, 903, 1023
Bsp13I TCCGGA 1 cut(s) 247
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 283, 512, 862
Bsp19I CCATGG 1 cut(s) 334
BspACI CCGC 9 cut(s) 106, 127, 137, 214, 269, 296, 369, 576, 673
BspANI GGCC 1 cut(s) 947
BspCNI CTCAG 3 cut(s) 243, 280, 486
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 1 cut(s) 216
BspLI GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
BspMAI CTGCAG 1 cut(s) 613
BspPI GGATC 2 cut(s) 278, 870
BspQI GCTCTTC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 430
BsrBI CCGCTC 2 cut(s) 296, 673
BsrDI GCAATG 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 4 cut(s) 636, 737, 743, 881
BssECI CCNNGG 4 cut(s) 334, 800, 801, 802
BssMI GATC 3 cut(s) 283, 512, 862
BssT1I CCWWGG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 37
Bst4CI ACNGT 1 cut(s) 994
Bst6I CTCTTC 2 cut(s) 364, 830
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 5 cut(s) 162, 227, 562, 913, 945
BstDEI CTNAG 3 cut(s) 230, 288, 494
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 286, 515, 865
BstMAI GTCTC 2 cut(s) 196, 430
BstMBI GATC 3 cut(s) 283, 512, 862
BstMWI GCNNNNNNNGC 2 cut(s) 222, 605
BstNI CCWGG 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 4 cut(s) 35, 726, 800, 801
BstSFI CTRYAG 2 cut(s) 417, 609
BstUI CGCG 1 cut(s) 216
BstV1I GCAGC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 862
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 862
Bsu36I CCTNAGG 1 cut(s) 494
BsuRI GGCC 1 cut(s) 947
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 7 cut(s) 45, 244, 488, 703, 717, 775, 1006
Cac8I GCNNGC 5 cut(s) 162, 227, 562, 913, 945
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 64, 117, 772, 797
Cfr9I CCCGGG 1 cut(s) 801
Csp6I GTAC 4 cut(s) 528, 587, 629, 736
CviAII CATG 5 cut(s) 60, 335, 465, 516, 783
CviQI GTAC 4 cut(s) 528, 587, 629, 736
DdeI CTNAG 3 cut(s) 230, 288, 494
DpnI GATC 3 cut(s) 285, 514, 864
DpnII GATC 3 cut(s) 283, 512, 862
Eam1104I CTCTTC 2 cut(s) 364, 830
EarI CTCTTC 2 cut(s) 364, 830
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 448, 903
Eco31I GGTCTC 1 cut(s) 430
Eco47I GGWCC 4 cut(s) 64, 117, 772, 797
Eco81I CCTNAGG 1 cut(s) 494
Eco88I CYCGRG 2 cut(s) 801, 902
EcoO109I RGGNCCY 2 cut(s) 64, 117
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 448, 903
ErhI CCWWGG 1 cut(s) 334
FaeI CATG 5 cut(s) 63, 338, 468, 519, 786
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FaqI GGGAC 5 cut(s) 130, 548, 743, 783, 785
FatI CATG 5 cut(s) 59, 334, 464, 515, 782
FauI CCCGC 2 cut(s) 276, 569
Fnu4HI GCNGC 2 cut(s) 106, 609
FokI GGATG 7 cut(s) 52, 231, 495, 704, 710, 762, 1013
FriOI GRGCYC 2 cut(s) 448, 903
Fsp4HI GCNGC 2 cut(s) 106, 609
FspBI CTAG 5 cut(s) 222, 398, 510, 557, 894
GlaI GCGC 1 cut(s) 104
GluI GCNGC 2 cut(s) 106, 609
GsuI CTGGAG 1 cut(s) 760
HaeIII GGCC 1 cut(s) 947
HapII CCGG 4 cut(s) 151, 248, 727, 802
HhaI GCGC 1 cut(s) 105
Hin1II CATG 5 cut(s) 63, 338, 468, 519, 786
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 7 cut(s) 32, 237, 310, 536, 614, 621, 680
HpaII CCGG 4 cut(s) 151, 248, 727, 802
HphI GGTGA 3 cut(s) 310, 514, 773
Hpy166II GTNNAC 3 cut(s) 22, 505, 589
Hpy188I TCNGA 2 cut(s) 685, 1027
Hpy188III TCNNGA 9 cut(s) 248, 287, 449, 510, 618, 832, 872, 904, 938
Hpy8I GTNNAC 3 cut(s) 22, 505, 589
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 994
HpyCH4IV ACGT 2 cut(s) 24, 543
HpyCH4V TGCA 3 cut(s) 350, 411, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 605
HpyF3I CTNAG 3 cut(s) 230, 288, 494
HpySE526I ACGT 2 cut(s) 24, 543
Hsp92II CATG 5 cut(s) 63, 338, 468, 519, 786
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 3 cut(s) 283, 512, 862
LguI GCTCTTC 1 cut(s) 830
LmnI GCTCC 2 cut(s) 451, 670
Lsp1109I GCAGC 1 cut(s) 595
MaeI CTAG 5 cut(s) 222, 398, 510, 557, 894
MaeII ACGT 2 cut(s) 24, 543
MaeIII GTNAC 2 cut(s) 712, 785
MalI GATC 3 cut(s) 285, 514, 864
MbiI CCGCTC 2 cut(s) 296, 673
MboI GATC 3 cut(s) 283, 512, 862
MboII GAAGA 6 cut(s) 89, 305, 322, 351, 776, 847
MfeI CAATTG 3 cut(s) 881, 951, 1030
MflI RGATCY 1 cut(s) 862
MhlI GDGCHC 3 cut(s) 448, 903, 1023
MluCI AATT 8 cut(s) 76, 140, 324, 433, 881, 951, 1013, 1030
MlyI GAGTC 1 cut(s) 530
MnlI CCTC 5 cut(s) 77, 367, 489, 824, 890
MroI TCCGGA 1 cut(s) 247
MseI TTAA 3 cut(s) 81, 522, 602
MslI CAYNNNNRTG 1 cut(s) 995
MspA1I CMGCKG 2 cut(s) 271, 369
MspI CCGG 4 cut(s) 151, 248, 727, 802
MspR9I CCNGG 4 cut(s) 37, 728, 802, 803
MunI CAATTG 3 cut(s) 881, 951, 1030
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 222, 605
NciI CCSGG 3 cut(s) 728, 802, 803
NcoI CCATGG 1 cut(s) 334
NdeII GATC 3 cut(s) 283, 512, 862
NlaIII CATG 5 cut(s) 63, 338, 468, 519, 786
NlaIV GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
NspI RCATGY 1 cut(s) 786
PaeR7I CTCGAG 1 cut(s) 902
PciSI GCTCTTC 1 cut(s) 830
PcsI WCGNNNNNNNCGW 1 cut(s) 1023
PfeI GAWTC 6 cut(s) 32, 237, 310, 614, 621, 680
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 2 cut(s) 107, 610
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PpuMI RGGWCCY 2 cut(s) 64, 117
Psp1406I AACGTT 2 cut(s) 24, 543
Psp5II RGGWCCY 2 cut(s) 64, 117
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 6 cut(s) 48, 65, 118, 447, 773, 799
PspPI GGNCC 4 cut(s) 64, 117, 772, 797
PspPPI RGGWCCY 2 cut(s) 64, 117
PstI CTGCAG 1 cut(s) 613
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 4 cut(s) 529, 588, 630, 737
RsaNI GTAC 4 cut(s) 528, 587, 629, 736
RseI CAYNNNNRTG 1 cut(s) 995
SapI GCTCTTC 1 cut(s) 830
SaqAI TTAA 3 cut(s) 81, 522, 602
SatI GCNGC 2 cut(s) 106, 609
Sau3AI GATC 3 cut(s) 283, 512, 862
Sau96I GGNCC 4 cut(s) 64, 117, 772, 797
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 37, 728, 802, 803
SduI GDGCHC 3 cut(s) 448, 903, 1023
SfcI CTRYAG 2 cut(s) 417, 609
Sfr274I CTCGAG 1 cut(s) 902
SinI GGWCC 4 cut(s) 64, 117, 772, 797
SlaI CTCGAG 1 cut(s) 902
SmaI CCCGGG 1 cut(s) 803
SmiMI CAYNNNNRTG 1 cut(s) 995
SmlI CTYRAG 2 cut(s) 902, 938
SmoI CTYRAG 2 cut(s) 902, 938
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 8 cut(s) 76, 140, 324, 433, 881, 951, 1013, 1030
SsiI CCGC 9 cut(s) 106, 127, 137, 214, 269, 296, 369, 576, 673
SspMI CTAG 5 cut(s) 222, 398, 510, 557, 894
StyD4I CCNGG 4 cut(s) 35, 726, 800, 801
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 1 cut(s) 994
TaiI ACGT 2 cut(s) 27, 546
TaqI TCGA 3 cut(s) 235, 816, 903
TasI AATT 8 cut(s) 76, 140, 324, 433, 881, 951, 1013, 1030
TatI WGTACW 3 cut(s) 527, 586, 628
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 6 cut(s) 32, 237, 310, 614, 621, 680
Tru1I TTAA 3 cut(s) 81, 522, 602
Tru9I TTAA 3 cut(s) 81, 522, 602
TseI GCWGC 1 cut(s) 608
TspDTI ATGAA 2 cut(s) 30, 536
TspGWI ACGGA 1 cut(s) 39
TspMI CCCGGG 1 cut(s) 801
VpaK11BI GGWCC 4 cut(s) 64, 117, 772, 797
XapI RAATTY 2 cut(s) 140, 1013
XbaI TCTAGA 1 cut(s) 509
XceI RCATGY 1 cut(s) 786
XhoI CTCGAG 1 cut(s) 902
XmaI CCCGGG 1 cut(s) 801
XspI CTAG 5 cut(s) 222, 398, 510, 557, 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.