Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Reverse (-)

3917489 .. 3918362

Gene Structure 874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1046000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATAGATAACCCTGTTAATGGGGTTGTCTCGTTTGATGTTATCATCGCCCACGAAACTAGCCTGCTCAGTCGAATCTATCATCTGTTCAATGTTAATCTATCCCCACTGAACATTGTTGATCCTGAGAGAGCGGTGAGCCAAGAGGTTATTCCTGTCATAATTTTCTTCCATGGTGGAAGCTTTGCACACTCTTCTTCAAACAACGGCATATATGATATTCTGTGTCGTCGACTAGTTGGTATCTGCAAGGCTGTAGTGGTCTCTGTTAATTATCGTAGGGCTTCTAAAAATCGCTATCCATGTGCCTATGATGATGGATGGACATCCTTGAGGTGGGTGAACTCTAGATCATGGCTTAAAAGTACAAGGGACTCAAACATTCATATCTATCTAGCTGACGATAGCTTTGGCAGGAACATTACTGAATCCAAGTTGCGGTTGGATGGGAAATACTTTGTAACCATCCAAGACTGGGACTGGTACTGGAGAGCTTTTCTCCCCGATGGTGAAGATAGGGACCATCCAACATGTAACCCATTTGGTCCCCGGGGTCAAAGCCTCGAAGCTGTCAAGTTCCCAAAGAGCCTAGTTGTGGTGGCAGGTTTGGATCTTGTTCAGGACTGGCAATTGGCTTACGCTAGAGGGCTCGAAAGTGCTGGCAAAAACATCAAACTTCTGTATCTTAAGCAAGCCACAATTGGTTTCTACCTGTTGCCGAATAATGAGCATTTCTACCCCGTGATGGATGACATAAGTAAATTCATGCTCTTCGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

261

Amino Acids

29.74

Weight (kDa)

6.65

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	37 - 93	2.1e-06	Carboxylesterase family
BD-FAE	PF20434	47 - 117	3.4e-06	BD-FAE
Abhydrolase_3	PF07859	54 - 142	1.3e-20	alpha/beta hydrolase fold
Abhydrolase_3	PF07859	148 - 237	4.2e-16	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	593
AccBSI	CCGCTC	1 cut(s)	134
AccI	GTMKAC	1 cut(s)	232
AciI	CCGC	2 cut(s)	134, 439
AclWI	GGATC	2 cut(s)	116, 618
AcsI	RAATTY	1 cut(s)	761
AfaI	GTAC	2 cut(s)	367, 485
AfiI	CCNNNNNNNGG	6 cut(s)	20, 336, 438, 475, 595, 745
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	530
AgsI	TTSAA	2 cut(s)	91, 201
AhlI	ACTAGT	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	5 cut(s)	183, 398, 408, 494, 569
AluI	AGCT	5 cut(s)	183, 398, 408, 494, 569
Alw26I	GTCTC	2 cut(s)	34, 268
AlwI	GGATC	2 cut(s)	116, 618
Ama87I	CYCGRG	1 cut(s)	549
ApoI	RAATTY	1 cut(s)	761
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspS9I	GGNCC	2 cut(s)	520, 545
AsuC2I	CCSGG	2 cut(s)	550, 551
AsuHPI	GGTGA	3 cut(s)	148, 352, 521
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	2 cut(s)	520, 545
BaeI	ACNNNNGTAYC	2 cut(s)	665, 698
BanII	GRGCYC	1 cut(s)	651
BccI	CCATC	7 cut(s)	311, 315, 440, 473, 500, 531, 739
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	2 cut(s)	550, 551
BcoDI	GTCTC	2 cut(s)	34, 268
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	6 cut(s)	60, 236, 348, 395, 590, 642
BfmI	CTRYAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	593
Bme1390I	CCNGG	2 cut(s)	550, 551
Bme18I	GGWCC	2 cut(s)	520, 545
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	2 cut(s)	520, 545
BmiI	GGNNCC	2 cut(s)	521, 547
BmrFI	CCNGG	2 cut(s)	550, 551
BmrI	ACTGGG	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	483, 515
BpmI	CTGGAG	1 cut(s)	508
BpuEI	CTTGAG	1 cut(s)	352
BpuMI	CCSGG	2 cut(s)	550, 551
BsaBI	GATNNNNATC	1 cut(s)	325
BsaI	GGTCTC	1 cut(s)	268
BsaJI	CCNNGG	4 cut(s)	172, 548, 549, 550
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 336, 438, 475, 595, 745
Bse1I	ACTGG	4 cut(s)	479, 485, 491, 629
Bse8I	GATNNNNATC	1 cut(s)	325
BseDI	CCNNGG	4 cut(s)	172, 548, 549, 550
BseGI	GGATG	6 cut(s)	326, 326, 451, 465, 523, 754
BseJI	GATNNNNATC	1 cut(s)	325
BseLI	CCNNNNNNNGG	6 cut(s)	20, 336, 438, 475, 595, 745
BseMII	CTCAG	2 cut(s)	82, 117
BseNI	ACTGG	4 cut(s)	479, 485, 491, 629
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	4 cut(s)	386, 491, 531, 533
BslI	CCNNNNNNNGG	6 cut(s)	20, 336, 438, 475, 595, 745
BsmAI	GTCTC	2 cut(s)	34, 268
BsmFI	GGGAC	4 cut(s)	386, 491, 531, 533
Bso31I	GGTCTC	1 cut(s)	268
BsoBI	CYCGRG	1 cut(s)	549
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp143I	GATC	3 cut(s)	121, 350, 610
Bsp19I	CCATGG	1 cut(s)	172
BspACI	CCGC	2 cut(s)	134, 439
BspCNI	CTCAG	2 cut(s)	81, 118
BspLI	GGNNCC	2 cut(s)	521, 547
BspMI	ACCTGC	1 cut(s)	593
BspPI	GGATC	2 cut(s)	116, 618
BspQI	GCTCTTC	1 cut(s)	776
BspTI	CTTAAG	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	268
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	4 cut(s)	479, 485, 491, 629
BssECI	CCNNGG	4 cut(s)	172, 548, 549, 550
BssMI	GATC	3 cut(s)	121, 350, 610
BssT1I	CCWWGG	1 cut(s)	172
Bst6I	CTCTTC	2 cut(s)	199, 776
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	3 cut(s)	65, 661, 693
BstDEI	CTNAG	2 cut(s)	68, 126
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	6 cut(s)	326, 326, 451, 465, 523, 754
BstKTI	GATC	3 cut(s)	124, 353, 613
BstMAI	GTCTC	2 cut(s)	34, 268
BstMBI	GATC	3 cut(s)	121, 350, 610
BstNSI	RCATGY	1 cut(s)	534
BstSCI	CCNGG	2 cut(s)	548, 549
BstSFI	CTRYAG	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	6 cut(s)	326, 326, 451, 465, 523, 754
BtsIMutI	CAGTG	1 cut(s)	107
BveI	ACCTGC	1 cut(s)	593
Cac8I	GCNNGC	3 cut(s)	65, 661, 693
Cfr13I	GGNCC	2 cut(s)	520, 545
Cfr9I	CCCGGG	1 cut(s)	549
Csp6I	GTAC	2 cut(s)	366, 484
CviAII	CATG	5 cut(s)	173, 303, 354, 531, 766
CviQI	GTAC	2 cut(s)	366, 484
DdeI	CTNAG	2 cut(s)	68, 126
DpnI	GATC	3 cut(s)	123, 352, 612
DpnII	GATC	3 cut(s)	121, 350, 610
Eam1104I	CTCTTC	2 cut(s)	199, 776
EarI	CTCTTC	2 cut(s)	199, 776
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	651
Eco31I	GGTCTC	1 cut(s)	268
Eco47I	GGWCC	2 cut(s)	520, 545
Eco88I	CYCGRG	1 cut(s)	549
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	651
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	5 cut(s)	176, 306, 357, 534, 769
FaqI	GGGAC	4 cut(s)	386, 491, 531, 533
FatI	CATG	5 cut(s)	172, 302, 353, 530, 765
FblI	GTMKAC	1 cut(s)	232
FokI	GGATG	6 cut(s)	313, 333, 452, 458, 510, 761
FriOI	GRGCYC	1 cut(s)	651
FspBI	CTAG	6 cut(s)	60, 236, 348, 395, 590, 642
GsuI	CTGGAG	1 cut(s)	508
HapII	CCGG	1 cut(s)	550
Hin1II	CATG	5 cut(s)	176, 306, 357, 534, 769
HincII	GTYRAC	1 cut(s)	233
HindII	GTYRAC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	3 cut(s)	75, 374, 428
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	3 cut(s)	148, 352, 521
Hpy166II	GTNNAC	2 cut(s)	233, 343
Hpy188III	TCNNGA	3 cut(s)	125, 348, 620
Hpy8I	GTNNAC	2 cut(s)	233, 343
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	188, 249
HpyF3I	CTNAG	2 cut(s)	68, 126
Hsp92II	CATG	5 cut(s)	176, 306, 357, 534, 769
Kzo9I	GATC	3 cut(s)	121, 350, 610
LguI	GCTCTTC	1 cut(s)	776
MaeI	CTAG	6 cut(s)	60, 236, 348, 395, 590, 642
MaeIII	GTNAC	2 cut(s)	460, 533
MalI	GATC	3 cut(s)	123, 352, 612
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	3 cut(s)	121, 350, 610
MboII	GAAGA	5 cut(s)	160, 186, 189, 524, 763
MfeI	CAATTG	3 cut(s)	629, 699, 778
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	651
MluCI	AATT	6 cut(s)	162, 271, 629, 699, 761, 778
MlyI	GAGTC	1 cut(s)	368
MmeI	TCCRAC	2 cut(s)	423, 551
MnlI	CCTC	4 cut(s)	139, 327, 572, 638
MseI	TTAA	5 cut(s)	18, 96, 270, 360, 687
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	550, 551
MunI	CAATTG	3 cut(s)	629, 699, 778
NciI	CCSGG	2 cut(s)	550, 551
NcoI	CCATGG	1 cut(s)	172
NdeII	GATC	3 cut(s)	121, 350, 610
NlaIII	CATG	5 cut(s)	176, 306, 357, 534, 769
NlaIV	GGNNCC	2 cut(s)	521, 547
NspI	RCATGY	1 cut(s)	534
PciI	ACATGT	1 cut(s)	530
PciSI	GCTCTTC	1 cut(s)	776
PfeI	GAWTC	2 cut(s)	75, 428
PleI	GAGTC	1 cut(s)	368
PpsI	GAGTC	1 cut(s)	368
PscI	ACATGT	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	521, 547
PspPI	GGNCC	2 cut(s)	520, 545
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	2 cut(s)	367, 485
RsaNI	GTAC	2 cut(s)	366, 484
SalI	GTCGAC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	5 cut(s)	18, 96, 270, 360, 687
Sau3AI	GATC	3 cut(s)	121, 350, 610
Sau96I	GGNCC	2 cut(s)	520, 545
SchI	GAGTC	1 cut(s)	368
ScrFI	CCNGG	2 cut(s)	550, 551
SduI	GDGCHC	1 cut(s)	651
SetI	ASST	9 cut(s)	150, 185, 338, 400, 410, 496, 571, 607, 714
SfcI	CTRYAG	1 cut(s)	255
SinI	GGWCC	2 cut(s)	520, 545
SmaI	CCCGGG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	331, 686
SmoI	CTYRAG	2 cut(s)	331, 686
SpeI	ACTAGT	1 cut(s)	235
Sse9I	AATT	6 cut(s)	162, 271, 629, 699, 761, 778
SsiI	CCGC	2 cut(s)	134, 439
SspMI	CTAG	6 cut(s)	60, 236, 348, 395, 590, 642
StyD4I	CCNGG	2 cut(s)	548, 549
StyI	CCWWGG	1 cut(s)	172
TaqI	TCGA	5 cut(s)	73, 232, 564, 651, 774
TasI	AATT	6 cut(s)	162, 271, 629, 699, 761, 778
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	2 cut(s)	75, 428
Tru1I	TTAA	5 cut(s)	18, 96, 270, 360, 687
Tru9I	TTAA	5 cut(s)	18, 96, 270, 360, 687
TscAI	CASTG	1 cut(s)	114
TspDTI	ATGAA	2 cut(s)	374, 754
TspMI	CCCGGG	1 cut(s)	549
TspRI	CASTG	1 cut(s)	114
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	2 cut(s)	520, 545
XapI	RAATTY	1 cut(s)	761
XbaI	TCTAGA	1 cut(s)	347
XceI	RCATGY	1 cut(s)	534
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XmaI	CCCGGG	1 cut(s)	549
XmiI	GTMKAC	1 cut(s)	232
XspI	CTAG	6 cut(s)	60, 236, 348, 395, 590, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.