Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Forward (+)

1430363 .. 1432844

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCTGCGAGCGATGAAGTTAATCTTATTGAGAGCAGAACAGTGGTTCCTCTCAATACATGGGTTTTAATATCCAACTTCAAAGTAGCCTACAATATCCTTCGTCGCCCTGATGGAACCTTTAACCGACACTTAGCTGAGTATCTAGACCGTAAAGTCACTGCAAACGCCAATCCGGTTGATGGGGTTTTCTCGTTCGATGTCTTGATTGATCGCAGGATCAATCTTCTAAGCAGAGTCTATAGACCAGCTTATGCAGATCAAGAGCAACCTCCTAGTATTTTAGATCTCGAGAAGCCTGTTGATGGCGACATTGTCCCTGTTATATTGTTCTTCCATGGAGGTAGCTTTGCTCATTCTTCTGCAAACAGTGCCATCTACGATACTCTTTGTCGCAGGCTTGTTGGTTTGTGCAAGTGTGTTGTTGTCTCTGTGAATTATCGGCGTGCACCAGAGAATCCATACCCTTGTGCTTATGATGATGGTTGGATTGCTCTTAATTGGGTTAACTCGAGATCTTGGCTTAAATCCAAGAAAGACTCAAAGGTCCATATTTTCTTGGCTGGTGATAGCTCTGGAGGTAACATCGCGCATAATGTGGCTTTAAGAGCGGGTGAATCGGGAATCGATGTTTTGGGGAACATTCTGCTGAATCCTATGTTTGGTGGGAATGAGAGAACGGAGTCTGAGAAAAGTTTGGATGGGAAATACTTTGTGACGGTTAGAGACCGCGATTGGTACTGGAAAGCGTTTTTACCCGAGGGAGAAGATAGAGAGCATCCAGCGTGTAATCCGTTTAGCCCGAGAGGGAAAAGCTTAGAAGGAGTGAGTTTCCCCAAGAGTCTTGTGGTTGTCGCGGGTTTGGATTTGATTAGAGATTGGCAGTTGGCATACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTTAAGCTTATGCATTTAGAGAAAGCAACTGTTGGGTTTTACCTCTTGCCTAATAACAATCATTTCCATAATGTTATGGATGAGATTTCGGCGTTTGTAAACGCGGAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

345

Amino Acids

38.62

Weight (kDa)

6.16

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	103 - 210	1.3e-09	BD-FAE
Abhydrolase_3	PF07859	109 - 322	1.5e-61	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	155, 545
AccBSI	CCGCTC	1 cut(s)	611
AccII	CGCG	5 cut(s)	590, 732, 857, 896, 1028
AciI	CCGC	6 cut(s)	611, 730, 857, 896, 914, 1028
AclWI	GGATC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	740
AfiI	CCNNNNNNNGG	3 cut(s)	182, 305, 662
AgsI	TTSAA	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	31, 63
AluBI	AGCT	6 cut(s)	137, 251, 348, 573, 816, 931
AluI	AGCT	6 cut(s)	137, 251, 348, 573, 816, 931
Alw21I	GWGCWC	1 cut(s)	451
Alw26I	GTCTC	2 cut(s)	433, 720
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	1 cut(s)	227
Ama87I	CYCGRG	4 cut(s)	290, 511, 758, 802
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	1 cut(s)	547
AsuHPI	GGTGA	2 cut(s)	578, 626
AvaI	CYCGRG	4 cut(s)	290, 511, 758, 802
AvaII	GGWCC	1 cut(s)	547
BaeGI	GKGCMC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	906
Bbv12I	GWGCWC	1 cut(s)	451
BccI	CCATC	6 cut(s)	107, 176, 299, 383, 476, 695
BcoDI	GTCTC	2 cut(s)	433, 720
BfaI	CTAG	2 cut(s)	146, 276
BfmI	CTRYAG	1 cut(s)	241
BglII	AGATCT	2 cut(s)	286, 515
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	4 cut(s)	290, 511, 758, 802
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	2 cut(s)	48, 118
BmsI	GCATC	1 cut(s)	787
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	890
Bsa29I	ATCGAT	1 cut(s)	627
BsaI	GGTCTC	1 cut(s)	720
BsaJI	CCNNGG	2 cut(s)	337, 759
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 305, 662
Bse1I	ACTGG	1 cut(s)	746
BseCI	ATCGAT	1 cut(s)	627
BseDI	CCNNGG	2 cut(s)	337, 759
BseGI	GGATG	3 cut(s)	706, 778, 1009
BseLI	CCNNNNNNNGG	3 cut(s)	182, 305, 662
BseMII	CTCAG	2 cut(s)	129, 678
BseNI	ACTGG	1 cut(s)	746
BseSI	GKGCMC	1 cut(s)	451
Bsh1236I	CGCG	5 cut(s)	590, 732, 857, 896, 1028
BshVI	ATCGAT	1 cut(s)	627
BsiHKAI	GWGCWC	1 cut(s)	451
BsiHKCI	CYCGRG	4 cut(s)	290, 511, 758, 802
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	182, 305, 662
BsmAI	GTCTC	2 cut(s)	433, 720
BsmFI	GGGAC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	720
BsoBI	CYCGRG	4 cut(s)	290, 511, 758, 802
Bsp1286I	GDGCHC	2 cut(s)	451, 906
Bsp143I	GATC	5 cut(s)	211, 219, 259, 286, 515
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	6 cut(s)	611, 730, 857, 896, 914, 1028
BspCNI	CTCAG	2 cut(s)	130, 679
BspDI	ATCGAT	1 cut(s)	627
BspFNI	CGCG	5 cut(s)	590, 732, 857, 896, 1028
BspLI	GGNNCC	2 cut(s)	48, 118
BspPI	GGATC	1 cut(s)	227
BspTNI	GGTCTC	1 cut(s)	720
BsrBI	CCGCTC	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	746
BssECI	CCNNGG	2 cut(s)	337, 759
BssMI	GATC	5 cut(s)	211, 219, 259, 286, 515
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	5 cut(s)	43, 152, 371, 721, 955
BstAPI	GCANNNNNTGC	1 cut(s)	371
BstC8I	GCNNGC	3 cut(s)	10, 398, 447
BstDEI	CTNAG	5 cut(s)	133, 138, 230, 687, 817
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	3 cut(s)	706, 778, 1009
BstFNI	CGCG	5 cut(s)	590, 732, 857, 896, 1028
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	5 cut(s)	214, 222, 262, 289, 518
BstMAI	GTCTC	2 cut(s)	433, 720
BstMBI	GATC	5 cut(s)	211, 219, 259, 286, 515
BstMWI	GCNNNNNNNGC	2 cut(s)	371, 608
BstSFI	CTRYAG	1 cut(s)	241
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	5 cut(s)	590, 732, 857, 896, 1028
BstX2I	RGATCY	2 cut(s)	286, 515
BstYI	RGATCY	2 cut(s)	286, 515
Bsu15I	ATCGAT	1 cut(s)	627
BsuTUI	ATCGAT	1 cut(s)	627
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	2 cut(s)	27, 571
BtsCI	GGATG	3 cut(s)	706, 778, 1009
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	48, 159, 376
Cac8I	GCNNGC	3 cut(s)	10, 398, 447
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	547
ClaI	ATCGAT	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	739
CviAII	CATG	2 cut(s)	60, 338
CviQI	GTAC	1 cut(s)	739
DdeI	CTNAG	5 cut(s)	133, 138, 230, 687, 817
DpnI	GATC	5 cut(s)	213, 221, 261, 288, 517
DpnII	GATC	5 cut(s)	211, 219, 259, 286, 515
DrdI	GACNNNNNNGTC	2 cut(s)	155, 545
DseDI	GACNNNNNNGTC	2 cut(s)	155, 545
Eco130I	CCWWGG	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	906
Eco31I	GGTCTC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	547
Eco88I	CYCGRG	4 cut(s)	290, 511, 758, 802
EcoT14I	CCWWGG	1 cut(s)	337
EcoT22I	ATGCAT	1 cut(s)	939
EcoT38I	GRGCYC	1 cut(s)	906
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	2 cut(s)	63, 341
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	2 cut(s)	59, 337
FauI	CCCGC	3 cut(s)	604, 850, 907
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	3 cut(s)	713, 765, 1016
FriOI	GRGCYC	1 cut(s)	906
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	146, 276
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	597
HapII	CCGG	1 cut(s)	176
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	2 cut(s)	63, 341
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	2 cut(s)	814, 929
HinfI	GANTC	8 cut(s)	237, 457, 539, 617, 624, 652, 683, 841
HpaI	GTTAAC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	2 cut(s)	578, 626
Hpy166II	GTNNAC	3 cut(s)	449, 508, 1024
Hpy188I	TCNGA	1 cut(s)	688
Hpy8I	GTNNAC	3 cut(s)	449, 508, 1024
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	110, 815, 893
HpyCH4III	ACNGT	5 cut(s)	43, 152, 371, 721, 955
HpyCH4V	TGCA	6 cut(s)	164, 257, 365, 414, 449, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	371, 608
HpyF3I	CTNAG	5 cut(s)	133, 138, 230, 687, 817
Hsp92II	CATG	2 cut(s)	63, 341
HspAI	GCGC	1 cut(s)	590
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	211, 219, 259, 286, 515
LweI	GCATC	1 cut(s)	787
MaeI	CTAG	2 cut(s)	146, 276
MaeIII	GTNAC	3 cut(s)	157, 581, 715
MalI	GATC	5 cut(s)	213, 221, 261, 288, 517
MbiI	CCGCTC	1 cut(s)	611
MboI	GATC	5 cut(s)	211, 219, 259, 286, 515
MboII	GAAGA	4 cut(s)	218, 325, 351, 779
MflI	RGATCY	2 cut(s)	286, 515
MhlI	GDGCHC	2 cut(s)	451, 906
MluCI	AATT	2 cut(s)	436, 499
MlyI	GAGTC	4 cut(s)	246, 533, 692, 850
MmeI	TCCRAC	2 cut(s)	99, 467
MnlI	CCTC	8 cut(s)	60, 282, 335, 572, 754, 800, 916, 977
Mph1103I	ATGCAT	1 cut(s)	939
MseI	TTAA	9 cut(s)	21, 68, 123, 498, 507, 525, 605, 927, 1036
MspI	CCGG	1 cut(s)	176
MvnI	CGCG	5 cut(s)	590, 732, 857, 896, 1028
MwoI	GCNNNNNNNGC	2 cut(s)	371, 608
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	5 cut(s)	211, 219, 259, 286, 515
NlaIII	CATG	2 cut(s)	63, 341
NlaIV	GGNNCC	2 cut(s)	48, 118
NmuCI	GTSAC	2 cut(s)	157, 715
NsiI	ATGCAT	1 cut(s)	939
PaeR7I	CTCGAG	2 cut(s)	290, 511
PfeI	GAWTC	4 cut(s)	457, 617, 624, 652
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	4 cut(s)	245, 533, 691, 849
PpsI	GAGTC	4 cut(s)	245, 533, 691, 849
PspN4I	GGNNCC	2 cut(s)	48, 118
PspPI	GGNCC	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	286, 515
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	1 cut(s)	740
RsaNI	GTAC	1 cut(s)	739
SaqAI	TTAA	9 cut(s)	21, 68, 123, 498, 507, 525, 605, 927, 1036
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	5 cut(s)	211, 219, 259, 286, 515
Sau96I	GGNCC	1 cut(s)	547
SchI	GAGTC	4 cut(s)	246, 533, 692, 850
SduI	GDGCHC	2 cut(s)	451, 906
SfaNI	GCATC	1 cut(s)	787
SfcI	CTRYAG	1 cut(s)	241
Sfr274I	CTCGAG	2 cut(s)	290, 511
SinI	GGWCC	1 cut(s)	547
SlaI	CTCGAG	2 cut(s)	290, 511
SmlI	CTYRAG	3 cut(s)	290, 511, 905
SmoI	CTYRAG	3 cut(s)	290, 511, 905
Sse9I	AATT	2 cut(s)	436, 499
SsiI	CCGC	6 cut(s)	611, 730, 857, 896, 914, 1028
SspMI	CTAG	2 cut(s)	146, 276
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	5 cut(s)	43, 152, 371, 721, 955
TaqI	TCGA	4 cut(s)	198, 291, 512, 627
TasI	AATT	2 cut(s)	436, 499
TfiI	GAWTC	4 cut(s)	457, 617, 624, 652
Tru1I	TTAA	9 cut(s)	21, 68, 123, 498, 507, 525, 605, 927, 1036
Tru9I	TTAA	9 cut(s)	21, 68, 123, 498, 507, 525, 605, 927, 1036
TscAI	CASTG	3 cut(s)	48, 166, 376
TseFI	GTSAC	2 cut(s)	157, 715
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	157, 715
TspDTI	ATGAA	1 cut(s)	30
TspGWI	ACGGA	2 cut(s)	695, 783
TspRI	CASTG	3 cut(s)	48, 166, 376
Tth111I	GACNNNGTC	1 cut(s)	314
VneI	GTGCAC	1 cut(s)	447
VpaK11BI	GGWCC	1 cut(s)	547
XbaI	TCTAGA	1 cut(s)	145
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XhoI	CTCGAG	2 cut(s)	290, 511
XspI	CTAG	2 cut(s)	146, 276
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.