Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Forward (+)

9628990 .. 9631291

Gene Structure 2302 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGCTGGAAGTGAAGAAGTTAATCTTATTGAGAGCAAGACAGTGGTTCCTCTCAATACATGGGTTCTAATATCCAACTTTAAGCTAGCTTACAATCTCCTGCGTCGCCCTGACGGAACTTTTAACCGTCATCTCGCAGAGTTTCTAGACCGGAAAGTCCCTGCAAATGCCAACCCTGTTAATGGGGTCTTCTCTTTTGATGTGATCATCGATCGCCAAACTAATTTGCTTAGCAGAGTTTACAGACCAGCTGATGCTGGCACTTCACCAAGTATTACTGATCTACAGAATCCTGTTGATGGTGAAATAGTGCCTGTTATTGTCTTCTTTCATGGTGGAAGCTTTGCACATTCTTCTGCAAACAGTGCTATTTATGATACTCTTTGTCGTAGGCTTGTTGGTTTGTGTGGTGCTGTTGTTGTCTCTGTGAATTATCGTCGTGCACCAGAGAATCGATACCCTTGTGCTTATGATGATGGATGGGCTGTTTTGAAATGGGTCAACTCGAGTTCTTGGCTTAGAAGCAAGAAAGACTCAAAGGTTCGTATTTTCTTGGCGGGTGATAGCTCTGGGGGTAACATTGTGCATAATGTCGCGGTAAGAGCGGTTGAGTCAAGGATCGATGTTTTGGGGAACATTTTGCTTAACCCTATGTTTGGAGGGACCGAAAGAACGGAATCTGAGAAACGTTTGGATGGGAAGTACTTTGTTACGGTTAGAGACCGAGATTGGTATTGGAGAGCGTTTCTTCCTGAGGGTGAAGACAGAGAGCATCCAGCGTGTAGCCCGTTTGGCCCGAGAAGCAAGAGTCTAGAAGGGTTGAGTTTCCCCAAGAGTCTTGTCGTTGTAGCGGGTTTAGATTTGATTCAAGATTGGCAATTGAAGTACGCGGAAGGGCTCAAGAAAGCGGGTCAAGAGGTGAAGCTTCTTTACTTGGAGCAAGCCACTATTGGCTTCTACTTATTGCCTAACAACAATCACTTCCATACCGTTATGGATGAGATAGCTGCATTTGTAAACGCAGAATGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

344

Amino Acids

38.43

Weight (kDa)

6.67

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	86 - 146	8.8e-06	Carboxylesterase family
BD-FAE	PF20434	101 - 208	9.4e-10	BD-FAE
Abhydrolase_3	PF07859	107 - 320	1e-61	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	155
AccBSI	CCGCTC	1 cut(s)	605
AccII	CGCG	2 cut(s)	596, 890
AciI	CCGC	6 cut(s)	557, 596, 605, 851, 890, 908
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	1 cut(s)	626
AfaI	GTAC	2 cut(s)	704, 887
AfiI	CCNNNNNNNGG	3 cut(s)	182, 299, 656
AgsI	TTSAA	3 cut(s)	493, 869, 883
AluBI	AGCT	7 cut(s)	85, 89, 251, 342, 567, 925, 1007
AluI	AGCT	7 cut(s)	85, 89, 251, 342, 567, 925, 1007
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	427, 714
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	626
Ama87I	CYCGRG	2 cut(s)	505, 796
AoxI	GGCC	1 cut(s)	793
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	1007
AspS9I	GGNCC	2 cut(s)	663, 794
AsuHPI	GGTGA	5 cut(s)	258, 314, 572, 770, 931
AsuNHI	GCTAGC	1 cut(s)	85
AvaI	CYCGRG	2 cut(s)	505, 796
AvaII	GGWCC	1 cut(s)	663
AxyI	CCTNAGG	1 cut(s)	753
BaeGI	GKGCMC	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	448, 481
BanII	GRGCYC	1 cut(s)	900
BarI	GAAGNNNNNNTAC	2 cut(s)	914, 946
BbsI	GAAGAC	3 cut(s)	181, 316, 768
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	1 cut(s)	994
BccI	CCATC	4 cut(s)	293, 470, 474, 689
BclI	TGATCA	1 cut(s)	204
BcoDI	GTCTC	2 cut(s)	427, 714
BfaI	CTAG	3 cut(s)	86, 146, 812
BfmI	CTRYAG	1 cut(s)	284
BglI	GCCNNNNNGGC	1 cut(s)	792
BisI	GCNGC	1 cut(s)	1008
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	1 cut(s)	1009
BmcAI	AGTACT	1 cut(s)	704
Bme18I	GGWCC	1 cut(s)	663
BmeT110I	CYCGRG	2 cut(s)	505, 796
BmgT120I	GGNCC	2 cut(s)	663, 794
BmiI	GGNNCC	2 cut(s)	48, 664
BmsI	GCATC	2 cut(s)	244, 781
BmtI	GCTAGC	1 cut(s)	89
BpiI	GAAGAC	3 cut(s)	181, 316, 768
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	884
Bsa29I	ATCGAT	3 cut(s)	210, 454, 621
BsaI	GGTCTC	1 cut(s)	714
BsaWI	WCCGGW	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 299, 656
Bse21I	CCTNAGG	1 cut(s)	753
BseCI	ATCGAT	3 cut(s)	210, 454, 621
BseGI	GGATG	4 cut(s)	485, 700, 772, 1003
BseLI	CCNNNNNNNGG	3 cut(s)	182, 299, 656
BseMII	CTCAG	2 cut(s)	672, 744
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	1 cut(s)	994
Bsh1236I	CGCG	2 cut(s)	596, 890
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	795
BshVI	ATCGAT	3 cut(s)	210, 454, 621
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	2 cut(s)	505, 796
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	2 cut(s)	143, 676
BslI	CCNNNNNNNGG	3 cut(s)	182, 299, 656
BsmAI	GTCTC	2 cut(s)	427, 714
BsmFI	GGGAC	2 cut(s)	143, 676
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	1 cut(s)	795
Bso31I	GGTCTC	1 cut(s)	714
BsoBI	CYCGRG	2 cut(s)	505, 796
Bsp1286I	GDGCHC	2 cut(s)	445, 900
Bsp143I	GATC	4 cut(s)	204, 211, 280, 618
Bsp1720I	GCTNAGC	1 cut(s)	230
BspACI	CCGC	6 cut(s)	557, 596, 605, 851, 890, 908
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	2 cut(s)	673, 745
BspDI	ATCGAT	3 cut(s)	210, 454, 621
BspFNI	CGCG	2 cut(s)	596, 890
BspLI	GGNNCC	2 cut(s)	48, 664
BspOI	GCTAGC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	714
BsrBI	CCGCTC	1 cut(s)	605
BssMI	GATC	4 cut(s)	204, 211, 280, 618
Bst4CI	ACNGT	5 cut(s)	43, 128, 365, 715, 991
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstC8I	GCNNGC	3 cut(s)	87, 259, 942
BstDEI	CTNAG	4 cut(s)	230, 518, 681, 753
BstF5I	GGATG	4 cut(s)	485, 700, 772, 1003
BstFNI	CGCG	2 cut(s)	596, 890
BstKTI	GATC	4 cut(s)	207, 214, 283, 621
BstMAI	GTCTC	2 cut(s)	427, 714
BstMBI	GATC	4 cut(s)	204, 211, 280, 618
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	4 cut(s)	365, 602, 792, 801
BstSFI	CTRYAG	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	2 cut(s)	596, 890
BstV1I	GCAGC	1 cut(s)	994
BstV2I	GAAGAC	3 cut(s)	181, 316, 768
Bsu15I	ATCGAT	3 cut(s)	210, 454, 621
Bsu36I	CCTNAGG	1 cut(s)	753
BsuRI	GGCC	1 cut(s)	795
BsuTUI	ATCGAT	3 cut(s)	210, 454, 621
BtsCI	GGATG	4 cut(s)	485, 700, 772, 1003
BtsIMutI	CAGTG	2 cut(s)	48, 370
Cac8I	GCNNGC	3 cut(s)	87, 259, 942
Cfr13I	GGNCC	2 cut(s)	663, 794
ClaI	ATCGAT	3 cut(s)	210, 454, 621
CseI	GACGC	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	703, 886
CviAII	CATG	2 cut(s)	60, 332
CviQI	GTAC	2 cut(s)	703, 886
DdeI	CTNAG	4 cut(s)	230, 518, 681, 753
DpnI	GATC	4 cut(s)	206, 213, 282, 620
DpnII	GATC	4 cut(s)	204, 211, 280, 618
DrdI	GACNNNNNNGTC	1 cut(s)	155
DseDI	GACNNNNNNGTC	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	900
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	753
Eco88I	CYCGRG	2 cut(s)	505, 796
EcoT38I	GRGCYC	1 cut(s)	900
FaeI	CATG	2 cut(s)	63, 335
FaiI	YATR	8 cut(s)	61, 333, 375, 471, 588, 653, 987, 995
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	2 cut(s)	143, 676
FatI	CATG	2 cut(s)	59, 331
FauI	CCCGC	3 cut(s)	550, 844, 901
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	1 cut(s)	1008
FokI	GGATG	4 cut(s)	492, 707, 759, 1010
FriOI	GRGCYC	1 cut(s)	900
Fsp4HI	GCNGC	1 cut(s)	1008
FspBI	CTAG	3 cut(s)	86, 146, 812
GluI	GCNGC	1 cut(s)	1008
HaeIII	GGCC	1 cut(s)	795
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	92
Hin1II	CATG	2 cut(s)	63, 335
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	2 cut(s)	340, 923
HinfI	GANTC	8 cut(s)	289, 451, 533, 611, 677, 808, 835, 865
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	5 cut(s)	258, 314, 572, 770, 931
Hpy166II	GTNNAC	4 cut(s)	241, 443, 502, 1018
Hpy188I	TCNGA	1 cut(s)	682
Hpy188III	TCNNGA	6 cut(s)	146, 752, 812, 869, 901, 914
Hpy8I	GTNNAC	4 cut(s)	241, 443, 502, 1018
Hpy99I	CGWCG	2 cut(s)	108, 441
HpyAV	CCTTC	2 cut(s)	809, 887
HpyCH4III	ACNGT	5 cut(s)	43, 128, 365, 715, 991
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	164, 347, 359, 443, 586, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	365, 602, 792, 801
HpyF3I	CTNAG	4 cut(s)	230, 518, 681, 753
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	2 cut(s)	63, 335
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	204, 211, 280, 618
LmnI	GCTCC	1 cut(s)	937
Lsp1109I	GCAGC	1 cut(s)	994
LweI	GCATC	2 cut(s)	244, 781
MaeI	CTAG	3 cut(s)	86, 146, 812
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	2 cut(s)	575, 709
MalI	GATC	4 cut(s)	206, 213, 282, 620
MbiI	CCGCTC	1 cut(s)	605
MboI	GATC	4 cut(s)	204, 211, 280, 618
MboII	GAAGA	6 cut(s)	26, 181, 316, 345, 740, 773
MfeI	CAATTG	1 cut(s)	878
MhlI	GDGCHC	2 cut(s)	445, 900
MluCI	AATT	3 cut(s)	223, 430, 878
MlyI	GAGTC	4 cut(s)	527, 620, 817, 844
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	60, 653, 748, 910
MseI	TTAA	5 cut(s)	21, 81, 123, 180, 645
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	878
Mva1269I	GAATGC	1 cut(s)	1031
MvnI	CGCG	2 cut(s)	596, 890
MwoI	GCNNNNNNNGC	4 cut(s)	365, 602, 792, 801
NdeII	GATC	4 cut(s)	204, 211, 280, 618
NheI	GCTAGC	1 cut(s)	85
NlaIII	CATG	2 cut(s)	63, 335
NlaIV	GGNNCC	2 cut(s)	48, 664
PaeR7I	CTCGAG	1 cut(s)	505
PctI	GAATGC	1 cut(s)	1031
PfeI	GAWTC	4 cut(s)	289, 451, 677, 865
PkrI	GCNGC	1 cut(s)	1009
Ple19I	CGATCG	1 cut(s)	214
PleI	GAGTC	4 cut(s)	527, 619, 816, 843
PpsI	GAGTC	4 cut(s)	527, 619, 816, 843
Psp1406I	AACGTT	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	48, 664
PspPI	GGNCC	2 cut(s)	663, 794
PspXI	VCTCGAGB	1 cut(s)	505
PvuI	CGATCG	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	2 cut(s)	704, 887
RsaNI	GTAC	2 cut(s)	703, 886
SaqAI	TTAA	5 cut(s)	21, 81, 123, 180, 645
SatI	GCNGC	1 cut(s)	1008
Sau3AI	GATC	4 cut(s)	204, 211, 280, 618
Sau96I	GGNCC	2 cut(s)	663, 794
ScaI	AGTACT	1 cut(s)	704
SchI	GAGTC	4 cut(s)	527, 620, 817, 844
SduI	GDGCHC	2 cut(s)	445, 900
SfaNI	GCATC	2 cut(s)	244, 781
SfcI	CTRYAG	1 cut(s)	284
Sfr274I	CTCGAG	1 cut(s)	505
SinI	GGWCC	1 cut(s)	663
SlaI	CTCGAG	1 cut(s)	505
SmlI	CTYRAG	2 cut(s)	505, 899
SmoI	CTYRAG	2 cut(s)	505, 899
Sse9I	AATT	3 cut(s)	223, 430, 878
SsiI	CCGC	6 cut(s)	557, 596, 605, 851, 890, 908
SspMI	CTAG	3 cut(s)	86, 146, 812
TaaI	ACNGT	5 cut(s)	43, 128, 365, 715, 991
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	4 cut(s)	210, 454, 506, 621
TaqII	GACCGA	2 cut(s)	680, 738
TasI	AATT	3 cut(s)	223, 430, 878
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	4 cut(s)	289, 451, 677, 865
Tru1I	TTAA	5 cut(s)	21, 81, 123, 180, 645
Tru9I	TTAA	5 cut(s)	21, 81, 123, 180, 645
TscAI	CASTG	2 cut(s)	48, 370
TseI	GCWGC	1 cut(s)	1007
TspDTI	ATGAA	1 cut(s)	320
TspGWI	ACGGA	2 cut(s)	129, 689
TspRI	CASTG	2 cut(s)	48, 370
VneI	GTGCAC	1 cut(s)	441
VpaK11BI	GGWCC	1 cut(s)	663
XbaI	TCTAGA	2 cut(s)	145, 811
XhoI	CTCGAG	1 cut(s)	505
XspI	CTAG	3 cut(s)	86, 146, 812
ZrmI	AGTACT	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.