Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009868

Physical Location & Seq

Genomic Coordinates Forward (+)

3650183 .. 3653037

Gene Structure 2855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG051900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGAGGATAATAATGAAGTTAATGAAGTTGACCTTACTGACTCCAAGATGGTAGTTCCATTGAACACTTGGGTCCTGATCTCTAACTTCAAGCTGTCCTACAACCTCCTCCGTCGCCCTGACGGGACTTTTAACCGCCACTTGGCAGAGTTCCTTGACCGGAAAGTGGCACCCAATGCAAATCCAGTTGATGGGGTTCTCTCATTTGATGTCATCATTGACAAAGGAACTAGCTTACTGACTCGAATCTATCAACCTGCCAGTGCTGATGCACCACAGCCGAACATTCTTGATTTCCACAAGCCTGTGGGGGTTGAGGTTCTTCCTGTCATAATTTTCTTCCATGGTGGAAGCTTTGCTCACTCCTCTGCAAACAGTGGCATATATGACATTCTGTGCCGCAGACTAGTTGGCAATTGCAAGGCTGTAGTGGTCTCGGTGAACTATCGTCGAGCACCTGAAAACCGATTCCCATGTGCCTATGATGATGGATGGACAGCCCTGAAGTGGGTGAACTCGCGGTCCTGGCTTAAAAGTACAAAGGACTCAAAAGTTCACATATATCTGGCTGGTGACAGCTCCGGTGGGAACATTGTACACAATGTTGCTTTGAGAGCAGCAGAATCTGGAATTGAGGTGTTGGGAAACATACTGCTCAACCCAATGTTTGGTGGGCTAGAGAGAACTGAATCTGAGGAGCGCCTGGATGGGAAATACTTTGTCACTATCCAAGACCGGGACTGGTATTGGAGAGCTTTTCTCCCTGAAGGAGAAGATAGGGACCATCCTGCATGTAATCCATTTGGCCCAAGGGGTATAAGCCTTAAAGATGTCAAGTTCCCAAAGAGCCTTGTGGTGGTGGCTGGTTTGGATCTTGTTCAGGACTGGCAACTAGCTTATGCTAAAGGACTTGAGAAGGCTGGCCAGGACGTCAAGCTTCTATTTCTCGACAAGGCCACGATTGGTTTCTACTTGTTGCCAAACAATGACCACTTCTACACCGTAATGAATGAGATAAGTAGCTTTGTGAGGTCTGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005975 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009058 GO:0009311 GO:0009312 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009755 GO:0009791 GO:0009892 GO:0009908 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010154 GO:0010325 GO:0010331 GO:0010468 GO:0010476 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0016051 GO:0016787 GO:0019222 GO:0019840 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0031406 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0036094 GO:0042221 GO:0042562 GO:0043167 GO:0043168 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043900 GO:0043902 GO:0044238 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048444 GO:0048518 GO:0048519 GO:0048522 GO:0048530 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0080154 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1901576 GO:1901700 GO:1901701 GO:1905392 GO:1905516 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Abhydrolase_3

Protein Analysis

347

Amino Acids

38.87

Weight (kDa)

5.79

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BD-FAE	PF20434	99 - 210	1.3e-10	BD-FAE
Abhydrolase_3	PF07859	111 - 324	1.4e-59	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009868)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05120 AT5G27320
fragaria_vesca	FvH4_6g04960 FvH4_6g04960 FvH4_6g04960 FvH4_6g04960
malus_domestica	MD04G1212400.v1.1 MD07G1046000.v1.1 MD12G1227200.v1.1
prunus_persica	Prupe.6G332800_v2.0.a1
pyrus_communis	pycom04g18850
rosa_chinensis	RchiOBHm_Chr3g0453451
rosa_laevigata	RLG00000025513
rosa_multiflora	Rmu_sc0000510.1_g000008
rosa_roxburghii	Rroxscaffold_6G00430420
rosa_rugosa	Rorug02G0649200
rosa_samantha	Rh3AG051900 Rh3BG053400 Rh3CG052700 Rh3DG053500
rosa_wichuraiana	Rw3G004000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	933
Acc36I	ACCTGC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	169
AccB7I	CCANNNNNTGG	2 cut(s)	191, 668
AccII	CGCG	1 cut(s)	520
AciI	CCGC	3 cut(s)	136, 400, 520
AclWI	GGATC	1 cut(s)	879
AcoI	YGGCCR	1 cut(s)	922
AcuI	CTGAAG	2 cut(s)	524, 786
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	2 cut(s)	538, 597
AfiI	CCNNNNNNNGG	8 cut(s)	142, 166, 191, 507, 508, 668, 736, 856
AgsI	TTSAA	2 cut(s)	64, 91
AhlI	ACTAGT	1 cut(s)	406
AjnI	CCWGG	3 cut(s)	524, 702, 924
AloI	GAACNNNNNNTCC	2 cut(s)	506, 538
AluBI	AGCT	8 cut(s)	94, 234, 354, 579, 755, 896, 937, 1023
AluI	AGCT	8 cut(s)	94, 234, 354, 579, 755, 896, 937, 1023
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	1 cut(s)	879
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	805, 922, 954
ApeKI	GCWGC	1 cut(s)	617
AspLEI	GCGC	1 cut(s)	702
AspS9I	GGNCC	4 cut(s)	73, 522, 781, 806
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	3 cut(s)	451, 523, 584
AvaII	GGWCC	3 cut(s)	73, 522, 781
BalI	TGGCCA	1 cut(s)	924
BanI	GGYRCC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	6 cut(s)	43, 185, 482, 486, 701, 792
BciT130I	CCWGG	3 cut(s)	526, 704, 926
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	439
BcuI	ACTAGT	1 cut(s)	406
BfaI	CTAG	4 cut(s)	231, 407, 677, 893
BfmI	CTRYAG	1 cut(s)	426
BfoI	RGCGCY	1 cut(s)	703
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	2 cut(s)	400, 618
BlsI	GCNGC	2 cut(s)	401, 619
Bme1390I	CCNGG	4 cut(s)	526, 704, 737, 926
Bme18I	GGWCC	3 cut(s)	73, 522, 781
BmgT120I	GGNCC	4 cut(s)	73, 522, 781, 806
BmiI	GGNNCC	3 cut(s)	74, 171, 782
BmrFI	CCNGG	4 cut(s)	526, 704, 737, 926
BmsI	GCATC	1 cut(s)	259
BplI	GAGNNNNNCTC	2 cut(s)	744, 776
BpuEI	CTTGAG	1 cut(s)	932
BpuMI	CCSGG	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	343, 809
BsaWI	WCCGGW	2 cut(s)	159, 581
Bsc4I	CCNNNNNNNGG	8 cut(s)	142, 166, 191, 507, 508, 668, 736, 856
Bse1I	ACTGG	4 cut(s)	185, 261, 746, 890
BseBI	CCWGG	3 cut(s)	526, 704, 926
BseDI	CCNNGG	2 cut(s)	343, 809
BseGI	GGATG	3 cut(s)	497, 712, 784
BseLI	CCNNNNNNNGG	8 cut(s)	142, 166, 191, 507, 508, 668, 736, 856
BseMII	CTCAG	1 cut(s)	684
BseNI	ACTGG	4 cut(s)	185, 261, 746, 890
BseRI	GAGGAG	3 cut(s)	98, 355, 710
BseXI	GCAGC	1 cut(s)	629
Bsh1236I	CGCG	1 cut(s)	520
BshFI	GGCC	3 cut(s)	807, 924, 956
BshNI	GGYRCC	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	457
BsiSI	CCGG	3 cut(s)	160, 582, 736
BslFI	GGGAC	3 cut(s)	139, 752, 794
BslI	CCNNNNNNNGG	8 cut(s)	142, 166, 191, 507, 508, 668, 736, 856
BsmAI	GTCTC	1 cut(s)	439
BsmFI	GGGAC	3 cut(s)	139, 752, 794
BsnI	GGCC	3 cut(s)	807, 924, 956
Bso31I	GGTCTC	1 cut(s)	439
Bsp1286I	GDGCHC	1 cut(s)	457
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	2 cut(s)	78, 871
Bsp19I	CCATGG	1 cut(s)	343
BspACI	CCGC	3 cut(s)	136, 400, 520
BspANI	GGCC	3 cut(s)	807, 924, 956
BspCNI	CTCAG	1 cut(s)	685
BspFNI	CGCG	1 cut(s)	520
BspLI	GGNNCC	3 cut(s)	74, 171, 782
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	879
BspT107I	GGYRCC	1 cut(s)	169
BspTNI	GGTCTC	1 cut(s)	439
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	4 cut(s)	185, 261, 746, 890
BssECI	CCNNGG	2 cut(s)	343, 809
BssMI	GATC	2 cut(s)	78, 871
BssNI	GRCGYC	1 cut(s)	930
BssT1I	CCWWGG	2 cut(s)	343, 809
Bst2UI	CCWGG	3 cut(s)	526, 704, 926
Bst4CI	ACNGT	2 cut(s)	377, 1003
BstACI	GRCGYC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	176
BstAUI	TGTACA	1 cut(s)	595
BstC8I	GCNNGC	1 cut(s)	922
BstDEI	CTNAG	1 cut(s)	693
BstDSI	CCRYGG	1 cut(s)	343
BstF5I	GGATG	3 cut(s)	497, 712, 784
BstFNI	CGCG	1 cut(s)	520
BstH2I	RGCGCY	1 cut(s)	703
BstHHI	GCGC	1 cut(s)	702
BstKTI	GATC	2 cut(s)	81, 874
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	2 cut(s)	78, 871
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 526, 614
BstNI	CCWGG	3 cut(s)	526, 704, 926
BstNSI	RCATGY	1 cut(s)	795
BstSCI	CCNGG	4 cut(s)	524, 702, 735, 924
BstSFI	CTRYAG	1 cut(s)	426
BstUI	CGCG	1 cut(s)	520
BstV1I	GCAGC	1 cut(s)	629
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BsuRI	GGCC	3 cut(s)	807, 924, 956
BtgI	CCRYGG	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	497, 712, 784
BtsIMutI	CAGTG	2 cut(s)	268, 382
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	922
CaiI	CAGNNNCTG	1 cut(s)	626
CfoI	GCGC	1 cut(s)	702
Cfr13I	GGNCC	4 cut(s)	73, 522, 781, 806
Csp6I	GTAC	2 cut(s)	537, 596
CviAII	CATG	3 cut(s)	344, 474, 792
CviQI	GTAC	2 cut(s)	537, 596
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	2 cut(s)	80, 873
DpnII	GATC	2 cut(s)	78, 871
EaeI	YGGCCR	1 cut(s)	922
Eco130I	CCWWGG	2 cut(s)	343, 809
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	3 cut(s)	73, 522, 781
Eco57I	CTGAAG	2 cut(s)	524, 786
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	524, 702, 924
EcoT14I	CCWWGG	2 cut(s)	343, 809
ErhI	CCWWGG	2 cut(s)	343, 809
FaeI	CATG	3 cut(s)	347, 477, 795
FalI	AAGNNNNNCTT	2 cut(s)	18, 50
FaqI	GGGAC	3 cut(s)	139, 752, 794
FatI	CATG	3 cut(s)	343, 473, 791
Fnu4HI	GCNGC	2 cut(s)	400, 618
FokI	GGATG	3 cut(s)	504, 719, 771
Fsp4HI	GCNGC	2 cut(s)	400, 618
FspBI	CTAG	4 cut(s)	231, 407, 677, 893
GlaI	GCGC	1 cut(s)	701
GluI	GCNGC	2 cut(s)	400, 618
HaeII	RGCGCY	1 cut(s)	703
HaeIII	GGCC	3 cut(s)	807, 924, 956
HapII	CCGG	3 cut(s)	160, 582, 736
HhaI	GCGC	1 cut(s)	702
Hin1I	GRCGYC	1 cut(s)	930
Hin1II	CATG	3 cut(s)	347, 477, 795
Hin6I	GCGC	1 cut(s)	700
HinP1I	GCGC	1 cut(s)	700
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	2 cut(s)	352, 935
HinfI	GANTC	7 cut(s)	41, 241, 246, 468, 545, 623, 689
HpaII	CCGG	3 cut(s)	160, 582, 736
HphI	GGTGA	3 cut(s)	451, 523, 584
Hpy166II	GTNNAC	5 cut(s)	31, 442, 514, 556, 598
Hpy188I	TCNGA	2 cut(s)	694, 1036
Hpy188III	TCNNGA	5 cut(s)	76, 290, 627, 881, 947
Hpy8I	GTNNAC	5 cut(s)	31, 442, 514, 556, 598
Hpy99I	CGWCG	2 cut(s)	117, 453
HpyAV	CCTTC	2 cut(s)	761, 910
HpyCH4III	ACNGT	2 cut(s)	377, 1003
HpyCH4IV	ACGT	1 cut(s)	930
HpyCH4V	TGCA	5 cut(s)	179, 272, 371, 420, 791
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 526, 614
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	1 cut(s)	930
Hsp92I	GRCGYC	1 cut(s)	930
Hsp92II	CATG	3 cut(s)	347, 477, 795
HspAI	GCGC	1 cut(s)	700
Kzo9I	GATC	2 cut(s)	78, 871
LmnI	GCTCC	2 cut(s)	584, 697
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	4 cut(s)	231, 407, 677, 893
MaeII	ACGT	1 cut(s)	930
MaeIII	GTNAC	2 cut(s)	572, 721
MalI	GATC	2 cut(s)	80, 873
MboI	GATC	2 cut(s)	78, 871
MboII	GAAGA	3 cut(s)	314, 331, 785
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	457
MlsI	TGGCCA	1 cut(s)	924
MluCI	AATT	3 cut(s)	333, 415, 630
MluNI	TGGCCA	1 cut(s)	924
MlyI	GAGTC	3 cut(s)	35, 235, 539
MnlI	CCTC	7 cut(s)	116, 119, 310, 376, 628, 688, 1023
Mox20I	TGGCCA	1 cut(s)	924
MscI	TGGCCA	1 cut(s)	924
MseI	TTAA	5 cut(s)	21, 132, 531, 825, 1042
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	924
MspI	CCGG	3 cut(s)	160, 582, 736
MspR9I	CCNGG	4 cut(s)	526, 704, 737, 926
MunI	CAATTG	1 cut(s)	415
MvaI	CCWGG	3 cut(s)	526, 704, 926
MvnI	CGCG	1 cut(s)	520
MwoI	GCNNNNNNNGC	3 cut(s)	176, 526, 614
NciI	CCSGG	1 cut(s)	737
NcoI	CCATGG	1 cut(s)	343
NdeII	GATC	2 cut(s)	78, 871
NlaIII	CATG	3 cut(s)	347, 477, 795
NlaIV	GGNNCC	3 cut(s)	74, 171, 782
NmuCI	GTSAC	2 cut(s)	572, 721
NspI	RCATGY	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	246, 468, 623, 689
PflMI	CCANNNNNTGG	2 cut(s)	191, 668
PkrI	GCNGC	2 cut(s)	401, 619
PleI	GAGTC	3 cut(s)	35, 235, 539
PpsI	GAGTC	3 cut(s)	35, 235, 539
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	524, 702, 924
PspGI	CCWGG	3 cut(s)	524, 702, 924
PspN4I	GGNNCC	3 cut(s)	74, 171, 782
PspPI	GGNCC	4 cut(s)	73, 522, 781, 806
PspPPI	RGGWCCY	1 cut(s)	73
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	871
RsaI	GTAC	2 cut(s)	538, 597
RsaNI	GTAC	2 cut(s)	537, 596
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	5 cut(s)	21, 132, 531, 825, 1042
SatI	GCNGC	2 cut(s)	400, 618
Sau3AI	GATC	2 cut(s)	78, 871
Sau96I	GGNCC	4 cut(s)	73, 522, 781, 806
SchI	GAGTC	3 cut(s)	35, 235, 539
ScrFI	CCNGG	4 cut(s)	526, 704, 737, 926
SduI	GDGCHC	1 cut(s)	457
SfaNI	GCATC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	3 cut(s)	73, 522, 781
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
SpeI	ACTAGT	1 cut(s)	406
Sse9I	AATT	3 cut(s)	333, 415, 630
SsiI	CCGC	3 cut(s)	136, 400, 520
SspMI	CTAG	4 cut(s)	231, 407, 677, 893
StyD4I	CCNGG	4 cut(s)	524, 702, 735, 924
StyI	CCWWGG	2 cut(s)	343, 809
TaaI	ACNGT	2 cut(s)	377, 1003
TaiI	ACGT	1 cut(s)	933
TaqI	TCGA	3 cut(s)	244, 451, 948
TasI	AATT	3 cut(s)	333, 415, 630
TatI	WGTACW	2 cut(s)	536, 595
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	4 cut(s)	246, 468, 623, 689
Tru1I	TTAA	5 cut(s)	21, 132, 531, 825, 1042
Tru9I	TTAA	5 cut(s)	21, 132, 531, 825, 1042
TscAI	CASTG	2 cut(s)	268, 382
TseFI	GTSAC	2 cut(s)	572, 721
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	2 cut(s)	572, 721
TspDTI	ATGAA	3 cut(s)	30, 39, 1022
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	2 cut(s)	268, 382
Van91I	CCANNNNNTGG	2 cut(s)	191, 668
VpaK11BI	GGWCC	3 cut(s)	73, 522, 781
XceI	RCATGY	1 cut(s)	795
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XspI	CTAG	4 cut(s)	231, 407, 677, 893
ZraI	GACGTC	1 cut(s)	931

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.