MD12G1227200.v1.1

Gibberellin receptor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
30287886 .. 30290189
2304 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1227200.v1.1.491

Sequence Viewer

Length: 1095 bp
ATGTGTTGGGTTTTCTTCAAGCGTAGATTTTGGAGTGGAAATTCTTCAGAACCGGTTTCCATGGCTGGGGGCAATGAAGTCAACGTTAATGAATCCAGGACAGTGGTTCCACTGAATACATGGGTCCTCATCTCCAATTTCAAGCTGTCATACAATCTTCTACGCCGCCCTGACGGGACTTTCAACCGCCACTTGGCGGAGTTCCTTGATCGGAAAGTGCCAGCCAATGCTAAACCCGTTGATGGGGTTGTCTCGTTTGACGTCATCATCGACCGCGAAACTAGCCTGCTAAGTCGAATCTATCATCCAGACAATGCTGATCTATCCCCGCTGAACATTGTTGATCTTAAGAGACCTGTGAACAAGGAGGTTCTTCCTGTCATAGTTTTCTTCCATGGTGGGAGCTTTGTACACTCCTCTTCAAACAGCGGTATATATGATATTTTGTGCCGCCGACTAGTTGGTGTCTGCAAGGCTGTAGTGGTTTCTGTGAACTATCGCCGGGCACCTGAAAATCGTTATCCATGTGCCTATGATGATGGGTGGACAGCCCTGAAGTGGGTGAAATCTAGACCATGGCTTAAAAGTACGAAGGACTCAAAAGTTCATATCTATCTCGCTGGCGATAGCTCTGGTGGGAACATTGTACACAATGTTGCTTTAAGAGCTGTAGAATTTGGAATCAATGTACTGGGAAATATACTGCTCAACCCTATGTTTGGTGGGCAGGAGCGGACTGAATCTGAGATGCGATTGGATGGGAAATACTTTGTCACCATCCAAGACCGGGACTGGTACTGGAGAGCTTTACTCCCTGAGGGAGAAGATAGGGACCATCCAGCATGTAACCCATTTGGTCCCCGGGGTCAAAGCCTCGAAGCTGTCAAGTTCCCGAAGAGCCTTATTGTGGTGGCTGGTTTGGATCTTATTCAGGACTGGCAATTGGCTTATGCTAGAGGGCTCGAGAGGGCTGGCATAAACGTGAAACTCATGTATCTTGAGCATGCCACAATTGGTTTCTACCTGTTGCCGAATAATGAGCACTTCTACACCGTGATGGATGAGATAAGTAAATTCGTGTGCTCCGACTATTAA

Protein Analysis

365

Amino Acids

41.31

Weight (kDa)

8.13

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 100 - 217 9.5e-07 Carboxylesterase family
BD-FAE PF20434 119 - 221 1.6e-09 BD-FAE
Abhydrolase_3 PF07859 128 - 341 4e-57 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0009868)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 264
AccB1I GGYRCC 1 cut(s) 505
AccBSI CCGCTC 1 cut(s) 733
AccII CGCG 1 cut(s) 276
AciI CCGC 8 cut(s) 166, 187, 197, 274, 329, 429, 451, 733
AclI AACGTT 1 cut(s) 84
AclWI GGATC 1 cut(s) 930
AcsI RAATTY 3 cut(s) 40, 674, 1073
AcuI CTGAAG 2 cut(s) 30, 575
AcyI GRCGYC 1 cut(s) 261
AfaI GTAC 5 cut(s) 411, 589, 648, 690, 797
AflII CTTAAG 1 cut(s) 347
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 4 cut(s) 19, 142, 184, 423
AhlI ACTAGT 1 cut(s) 457
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 6 cut(s) 145, 405, 630, 668, 806, 881
AluI AGCT 6 cut(s) 145, 405, 630, 668, 806, 881
Alw21I GWGCWC 2 cut(s) 1044, 1085
Alw26I GTCTC 2 cut(s) 256, 346
AlwI GGATC 1 cut(s) 930
Ama87I CYCGRG 2 cut(s) 861, 962
ApoI RAATTY 3 cut(s) 40, 674, 1073
AsiGI ACCGGT 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 43
AspS9I GGNCC 3 cut(s) 124, 832, 857
AsuC2I CCSGG 4 cut(s) 503, 788, 862, 863
AsuHPI GGTGA 2 cut(s) 574, 766
AvaI CYCGRG 2 cut(s) 861, 962
AvaII GGWCC 3 cut(s) 124, 832, 857
AxyI CCTNAGG 1 cut(s) 816
BaeGI GKGCMC 1 cut(s) 508
BaeI ACNNNNGTAYC 2 cut(s) 977, 1010
BanI GGYRCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 963
Bbv12I GWGCWC 2 cut(s) 1044, 1085
BccI CCATC 6 cut(s) 236, 533, 752, 785, 843, 1051
BciT130I CCWGG 1 cut(s) 97
BcnI CCSGG 4 cut(s) 503, 788, 862, 863
BcoDI GTCTC 2 cut(s) 256, 346
BcuI ACTAGT 1 cut(s) 457
BfaI CTAG 4 cut(s) 282, 458, 570, 954
BfmI CTRYAG 2 cut(s) 477, 669
BfrI CTTAAG 1 cut(s) 347
BisI GCNGC 2 cut(s) 166, 451
BlsI GCNGC 2 cut(s) 167, 452
Bme1390I CCNGG 5 cut(s) 97, 503, 788, 862, 863
Bme18I GGWCC 3 cut(s) 124, 832, 857
BmeT110I CYCGRG 2 cut(s) 861, 962
BmgT120I GGNCC 3 cut(s) 124, 832, 857
BmiI GGNNCC 5 cut(s) 108, 125, 507, 833, 859
BmrFI CCNGG 5 cut(s) 97, 503, 788, 862, 863
BmrI ACTGGG 1 cut(s) 701
BmsI GCATC 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 795, 827
BpmI CTGGAG 1 cut(s) 820
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 4 cut(s) 503, 788, 862, 863
BsaHI GRCGYC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 346
BsaJI CCNNGG 6 cut(s) 60, 394, 575, 860, 861, 862
BsaWI WCCGGW 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 4 cut(s) 696, 797, 803, 941
Bse21I CCTNAGG 1 cut(s) 816
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 6 cut(s) 60, 394, 575, 860, 861, 862
BseGI GGATG 5 cut(s) 304, 763, 777, 835, 1066
BseMI GCAATG 1 cut(s) 79
BseMII CTCAG 2 cut(s) 735, 807
BseNI ACTGG 4 cut(s) 696, 797, 803, 941
BseRI GAGGAG 1 cut(s) 406
BseSI GKGCMC 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 276
Bsh1285I CGRYCG 1 cut(s) 274
BshNI GGYRCC 1 cut(s) 505
BshTI ACCGGT 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 2 cut(s) 1044, 1085
BsiHKCI CYCGRG 2 cut(s) 861, 962
BsiSI CCGG 4 cut(s) 53, 502, 787, 862
BslFI GGGAC 4 cut(s) 190, 803, 843, 845
BsmAI GTCTC 2 cut(s) 256, 346
BsmFI GGGAC 4 cut(s) 190, 803, 843, 845
Bso31I GGTCTC 1 cut(s) 346
BsoBI CYCGRG 2 cut(s) 861, 962
Bsp1286I GDGCHC 4 cut(s) 508, 963, 1044, 1085
Bsp1407I TGTACA 2 cut(s) 409, 646
Bsp143I GATC 4 cut(s) 208, 319, 343, 922
Bsp19I CCATGG 3 cut(s) 60, 394, 575
BspACI CCGC 8 cut(s) 166, 187, 197, 274, 329, 429, 451, 733
BspCNI CTCAG 2 cut(s) 736, 808
BspFNI CGCG 1 cut(s) 276
BspLI GGNNCC 5 cut(s) 108, 125, 507, 833, 859
BspPI GGATC 1 cut(s) 930
BspQI GCTCTTC 1 cut(s) 890
BspT107I GGYRCC 1 cut(s) 505
BspTI CTTAAG 1 cut(s) 347
BspTNI GGTCTC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 79
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 2 cut(s) 409, 646
BsrI ACTGG 4 cut(s) 696, 797, 803, 941
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 6 cut(s) 60, 394, 575, 860, 861, 862
BssMI GATC 4 cut(s) 208, 319, 343, 922
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 3 cut(s) 60, 394, 575
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 103, 1054
Bst6I CTCTTC 2 cut(s) 424, 890
BstACI GRCGYC 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 347
BstAUI TGTACA 2 cut(s) 409, 646
BstC8I GCNNGC 5 cut(s) 222, 287, 622, 973, 1005
BstDEI CTNAG 3 cut(s) 290, 744, 816
BstDSI CCRYGG 3 cut(s) 60, 394, 575
BstF5I GGATG 5 cut(s) 304, 763, 777, 835, 1066
BstFNI CGCG 1 cut(s) 276
BstKTI GATC 4 cut(s) 211, 322, 346, 925
BstMAI GTCTC 2 cut(s) 256, 346
BstMBI GATC 4 cut(s) 208, 319, 343, 922
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 2 cut(s) 282, 665
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 2 cut(s) 846, 1007
BstSCI CCNGG 5 cut(s) 95, 501, 786, 860, 861
BstSFI CTRYAG 2 cut(s) 477, 669
BstSLI GKGCMC 1 cut(s) 508
BstUI CGCG 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 922
BstXI CCANNNNNNTGG 1 cut(s) 103
BstYI RGATCY 1 cut(s) 922
Bsu36I CCTNAGG 1 cut(s) 816
BtgI CCRYGG 3 cut(s) 60, 394, 575
BtsCI GGATG 5 cut(s) 304, 763, 777, 835, 1066
BtsIMutI CAGTG 2 cut(s) 108, 110
Cac8I GCNNGC 5 cut(s) 222, 287, 622, 973, 1005
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 124, 832, 857
Cfr9I CCCGGG 1 cut(s) 861
Csp6I GTAC 5 cut(s) 410, 588, 647, 689, 796
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 8 cut(s) 61, 120, 395, 525, 576, 843, 991, 1004
CviQI GTAC 5 cut(s) 410, 588, 647, 689, 796
DdeI CTNAG 3 cut(s) 290, 744, 816
DpnI GATC 4 cut(s) 210, 321, 345, 924
DpnII GATC 4 cut(s) 208, 319, 343, 922
Eam1104I CTCTTC 2 cut(s) 424, 890
EarI CTCTTC 2 cut(s) 424, 890
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 60, 394, 575
Eco24I GRGCYC 1 cut(s) 963
Eco31I GGTCTC 1 cut(s) 346
Eco47I GGWCC 3 cut(s) 124, 832, 857
Eco57I CTGAAG 2 cut(s) 30, 575
Eco81I CCTNAGG 1 cut(s) 816
Eco88I CYCGRG 2 cut(s) 861, 962
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 3 cut(s) 60, 394, 575
EcoT38I GRGCYC 1 cut(s) 963
ErhI CCWWGG 3 cut(s) 60, 394, 575
FaeI CATG 8 cut(s) 64, 123, 398, 528, 579, 846, 994, 1007
FaqI GGGAC 4 cut(s) 190, 803, 843, 845
FatI CATG 8 cut(s) 60, 119, 394, 524, 575, 842, 990, 1003
FauI CCCGC 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 166, 451
FokI GGATG 5 cut(s) 291, 764, 770, 822, 1073
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 2 cut(s) 166, 451
FspBI CTAG 4 cut(s) 282, 458, 570, 954
GluI GCNGC 2 cut(s) 166, 451
GsaI CCCAGC 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 820
HapII CCGG 4 cut(s) 53, 502, 787, 862
Hin1I GRCGYC 1 cut(s) 261
Hin1II CATG 8 cut(s) 64, 123, 398, 528, 579, 846, 994, 1007
HincII GTYRAC 1 cut(s) 82
HindII GTYRAC 1 cut(s) 82
HinfI GANTC 5 cut(s) 92, 297, 596, 681, 740
HpaII CCGG 4 cut(s) 53, 502, 787, 862
HphI GGTGA 2 cut(s) 574, 766
Hpy166II GTNNAC 6 cut(s) 82, 361, 412, 493, 546, 649
Hpy188I TCNGA 4 cut(s) 49, 213, 745, 1087
Hpy188III TCNNGA 6 cut(s) 308, 570, 892, 932, 964, 998
Hpy8I GTNNAC 6 cut(s) 82, 361, 412, 493, 546, 649
HpyAV CCTTC 1 cut(s) 586
HpyCH4III ACNGT 2 cut(s) 103, 1054
HpyCH4IV ACGT 3 cut(s) 84, 261, 981
HpyCH4V TGCA 1 cut(s) 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 665
HpyF3I CTNAG 3 cut(s) 290, 744, 816
HpySE526I ACGT 3 cut(s) 84, 261, 981
Hsp92I GRCGYC 1 cut(s) 261
Hsp92II CATG 8 cut(s) 64, 123, 398, 528, 579, 846, 994, 1007
Kzo9I GATC 4 cut(s) 208, 319, 343, 922
LguI GCTCTTC 1 cut(s) 890
LmnI GCTCC 3 cut(s) 402, 730, 1088
LweI GCATC 1 cut(s) 738
MaeI CTAG 4 cut(s) 282, 458, 570, 954
MaeII ACGT 3 cut(s) 84, 261, 981
MaeIII GTNAC 2 cut(s) 772, 845
MalI GATC 4 cut(s) 210, 321, 345, 924
MbiI CCGCTC 1 cut(s) 733
MboI GATC 4 cut(s) 208, 319, 343, 922
MboII GAAGA 8 cut(s) 7, 36, 149, 365, 382, 411, 836, 907
MfeI CAATTG 2 cut(s) 941, 1011
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 4 cut(s) 508, 963, 1044, 1085
MluCI AATT 6 cut(s) 40, 136, 674, 941, 1011, 1073
MlyI GAGTC 1 cut(s) 590
MnlI CCTC 7 cut(s) 137, 361, 427, 811, 884, 950, 960
MroXI GAANNNNTTC 1 cut(s) 43
MseI TTAA 5 cut(s) 87, 348, 582, 662, 1093
MslI CAYNNNNRTG 2 cut(s) 980, 1055
MspA1I CMGCKG 2 cut(s) 331, 429
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 53, 502, 787, 862
MspR9I CCNGG 5 cut(s) 97, 503, 788, 862, 863
MunI CAATTG 2 cut(s) 941, 1011
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 282, 665
NciI CCSGG 4 cut(s) 503, 788, 862, 863
NcoI CCATGG 3 cut(s) 60, 394, 575
NdeII GATC 4 cut(s) 208, 319, 343, 922
NlaIII CATG 8 cut(s) 64, 123, 398, 528, 579, 846, 994, 1007
NlaIV GGNNCC 5 cut(s) 108, 125, 507, 833, 859
NmuCI GTSAC 1 cut(s) 772
NspI RCATGY 2 cut(s) 846, 1007
PaeI GCATGC 1 cut(s) 1007
PaeR7I CTCGAG 1 cut(s) 962
PciSI GCTCTTC 1 cut(s) 890
PcsI WCGNNNNNNNCGW 2 cut(s) 267, 1083
PdmI GAANNNNTTC 1 cut(s) 43
PfeI GAWTC 4 cut(s) 92, 297, 681, 740
PfoI TCCNGGA 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 167, 452
PleI GAGTC 1 cut(s) 590
PpsI GAGTC 1 cut(s) 590
PpuMI RGGWCCY 1 cut(s) 124
Psp1406I AACGTT 1 cut(s) 84
Psp5II RGGWCCY 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 5 cut(s) 108, 125, 507, 833, 859
PspPI GGNCC 3 cut(s) 124, 832, 857
PspPPI RGGWCCY 1 cut(s) 124
PsuI RGATCY 1 cut(s) 922
RsaI GTAC 5 cut(s) 411, 589, 648, 690, 797
RsaNI GTAC 5 cut(s) 410, 588, 647, 689, 796
RseI CAYNNNNRTG 2 cut(s) 980, 1055
SapI GCTCTTC 1 cut(s) 890
SaqAI TTAA 5 cut(s) 87, 348, 582, 662, 1093
SatI GCNGC 2 cut(s) 166, 451
Sau3AI GATC 4 cut(s) 208, 319, 343, 922
Sau96I GGNCC 3 cut(s) 124, 832, 857
SchI GAGTC 1 cut(s) 590
ScrFI CCNGG 5 cut(s) 97, 503, 788, 862, 863
SduI GDGCHC 4 cut(s) 508, 963, 1044, 1085
SfaNI GCATC 1 cut(s) 738
SfcI CTRYAG 2 cut(s) 477, 669
Sfr274I CTCGAG 1 cut(s) 962
SinI GGWCC 3 cut(s) 124, 832, 857
SlaI CTCGAG 1 cut(s) 962
SmaI CCCGGG 1 cut(s) 863
SmiMI CAYNNNNRTG 2 cut(s) 980, 1055
SmlI CTYRAG 3 cut(s) 347, 962, 998
SmoI CTYRAG 3 cut(s) 347, 962, 998
SpeI ACTAGT 1 cut(s) 457
SphI GCATGC 1 cut(s) 1007
Sse9I AATT 6 cut(s) 40, 136, 674, 941, 1011, 1073
SsiI CCGC 8 cut(s) 166, 187, 197, 274, 329, 429, 451, 733
SspMI CTAG 4 cut(s) 282, 458, 570, 954
StyD4I CCNGG 5 cut(s) 95, 501, 786, 860, 861
StyI CCWWGG 3 cut(s) 60, 394, 575
TaaI ACNGT 2 cut(s) 103, 1054
TaiI ACGT 3 cut(s) 87, 264, 984
TaqI TCGA 4 cut(s) 270, 295, 876, 963
TasI AATT 6 cut(s) 40, 136, 674, 941, 1011, 1073
TatI WGTACW 3 cut(s) 409, 646, 688
TauI GCSGC 2 cut(s) 168, 453
TfiI GAWTC 4 cut(s) 92, 297, 681, 740
Tru1I TTAA 5 cut(s) 87, 348, 582, 662, 1093
Tru9I TTAA 5 cut(s) 87, 348, 582, 662, 1093
TscAI CASTG 2 cut(s) 108, 117
TseFI GTSAC 1 cut(s) 772
Tsp45I GTSAC 1 cut(s) 772
TspDTI ATGAA 3 cut(s) 90, 105, 596
TspMI CCCGGG 1 cut(s) 861
TspRI CASTG 2 cut(s) 108, 117
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 124, 832, 857
XapI RAATTY 3 cut(s) 40, 674, 1073
XbaI TCTAGA 1 cut(s) 569
XceI RCATGY 2 cut(s) 846, 1007
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XhoI CTCGAG 1 cut(s) 962
XmaI CCCGGG 1 cut(s) 861
XmnI GAANNNNTTC 1 cut(s) 43
XspI CTAG 4 cut(s) 282, 458, 570, 954
ZraI GACGTC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.