Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008790

Physical Location & Seq

Genomic Coordinates Forward (+)

3844332 .. 3847757

Gene Structure 3426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g06560.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGGGAAGGCCTCTGTGTCACTTAGACTGACACTTCTCTTCTCCTTCTCTCTCACAGCTTCCTACTCCTCCTTCACAATCACACCCTCTTCTTCTCTCAAACAATCTCCACCATCTCCCAAAGCCACCCCTTCAGACCTTCTCTCTCTGCTGGGCCCCAAATCCCAGTCTTCATCCGTTGATCCCCTCCTGGCCCACCAACTCACTTCCTGCTTCAAGTTCCTCGTACCCTTTACTCCCAAAGTCCCGGAGAAGTTTCCCGGTAGAAAATTCTTGACGTTGAAGCAAAAGGGTCAACGAGGAGCGGAGGAGGATGAGCTTGTTTGGTGGCCCCCACAGCCGGTTTTGGACCTGGCCCGCCTTGCCGTTGACTCCGGCGGAGACCCGGCTGCTATTCACCGGGCTTTGGATCCGACAATGATCACTGTACCTGATGTTGAAGGATGCGAAGAAAACCGATGTCAGCTTACCAGAACTCCATACGGCAGACATTTCATTAGTGAGGAGTTGAATTCATATCTTGAATTTTTATTTGAACTTATTCGTTCCCGCGGTCCCACTGTTGGGTTGAATGTGTCGTTGAGTCGCTATGATTTGTTCCATGGCCACCTATTTCTTGCCTTAGAAACCGGAAGACTTGGTATATTGTTTCATGCGAAAGAATACCCTGCATATGATAAAGAAGTATTTCCATACAACATGGGTTACTGTCAAATAGGGTCTAATGTGACGTATGATGACTCAATGAACCTGCGAAATATCCTCTGGCTAGCTCCATTGCCAAGCAATTCAGCCAAAGGCTGGGAAGCACCAGGTGTCCTGGTGGTGCTGGATGCCCGTCCAGATGGAATCATTTACAGAGATCTAATACCAGAATATGTAAATTTTGCAAGGACCATATATGAAGACGATCTCGGGGAGGTTGCAGTTGATGTCAACTATTTGGCTGTGGGAAATCCAGGGTCGAAGTTTCAACTTTTCATTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.55

Weight (kDa)

5.58

Isoelectric Point (pI)

42.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27710 AT5G27710
fragaria_vesca	FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560
malus_domestica	MD04G1200800.v1.1
prunus_persica	Prupe.6G320900_v2.0.a1
pyrus_communis	pycom04g17690
rosa_chinensis	RchiOBHm_Chr3g0455711
rosa_laevigata	RLG00000025337
rosa_multiflora	Rmu_sc0002050.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423530 Rroxscaffold_6G00424030
rosa_rugosa	Rorug03G0009300 Rorug03G0009300
rosa_samantha	Rh3AG069000 Rh3BG071500 Rh3CG069800 Rh3DG072200
rosa_wichuraiana	Rw3G005570 Rw3G005920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	759
AccB7I	CCANNNNNTGG	1 cut(s)	801
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	1 cut(s)	552
AciI	CCGC	5 cut(s)	305, 358, 378, 550, 552
AclWI	GGATC	3 cut(s)	176, 404, 417
AcoI	YGGCCR	1 cut(s)	604
AcsI	RAATTY	4 cut(s)	269, 511, 524, 883
AcuI	CTGAAG	1 cut(s)	117
AdeI	CACNNNGTG	1 cut(s)	815
AfaI	GTAC	2 cut(s)	228, 429
AfiI	CCNNNNNNNGG	5 cut(s)	340, 406, 563, 564, 801
AgsI	TTSAA	8 cut(s)	217, 283, 440, 511, 524, 536, 571, 974
AjnI	CCWGG	5 cut(s)	189, 351, 811, 819, 958
AluBI	AGCT	4 cut(s)	59, 319, 466, 773
AluI	AGCT	4 cut(s)	59, 319, 466, 773
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	3 cut(s)	176, 404, 417
Ama87I	CYCGRG	1 cut(s)	914
AoxI	GGCC	6 cut(s)	9, 154, 192, 329, 354, 604
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	4 cut(s)	269, 511, 524, 883
Asp700I	GAANNNNTTC	2 cut(s)	540, 687
AspS9I	GGNCC	8 cut(s)	154, 155, 193, 330, 349, 355, 554, 894
AsuC2I	CCSGG	4 cut(s)	248, 261, 386, 401
AsuHPI	GGTGA	1 cut(s)	389
AsuNHI	GCTAGC	1 cut(s)	769
AvaI	CYCGRG	1 cut(s)	914
AvaII	GGWCC	3 cut(s)	349, 554, 894
BaeGI	GKGCMC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	606
BamHI	GGATCC	1 cut(s)	409
BanII	GRGCYC	1 cut(s)	158
BbsI	GAAGAC	3 cut(s)	162, 640, 912
BbvI	GCAGC	1 cut(s)	376
BccI	CCATC	2 cut(s)	121, 839
BceAI	ACGGC	2 cut(s)	350, 499
BciT130I	CCWGG	5 cut(s)	191, 353, 813, 821, 960
BclI	TGATCA	1 cut(s)	420
BcnI	CCSGG	4 cut(s)	248, 261, 386, 401
BcoDI	GTCTC	1 cut(s)	375
BfaI	CTAG	1 cut(s)	770
BfuAI	ACCTGC	1 cut(s)	759
BglII	AGATCT	1 cut(s)	862
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	9 cut(s)	191, 248, 261, 353, 386, 401, 813, 821, 960
Bme18I	GGWCC	3 cut(s)	349, 554, 894
BmeT110I	CYCGRG	1 cut(s)	914
BmgT120I	GGNCC	8 cut(s)	154, 155, 193, 330, 349, 355, 554, 894
BmiI	GGNNCC	5 cut(s)	156, 157, 332, 411, 556
BmrFI	CCNGG	9 cut(s)	191, 248, 261, 353, 386, 401, 813, 821, 960
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	2 cut(s)	434, 823
BmtI	GCTAGC	1 cut(s)	773
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	3 cut(s)	162, 640, 912
BpuMI	CCSGG	4 cut(s)	248, 261, 386, 401
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	550, 601, 959
BsaWI	WCCGGW	1 cut(s)	629
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	340, 406, 563, 564, 801
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	776
BseBI	CCWGG	5 cut(s)	191, 353, 813, 821, 960
BseDI	CCNNGG	3 cut(s)	550, 601, 959
BseGI	GGATG	4 cut(s)	173, 319, 449, 838
BseLI	CCNNNNNNNGG	5 cut(s)	340, 406, 563, 564, 801
BseMI	GCAATG	1 cut(s)	776
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	4 cut(s)	58, 315, 323, 518
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	2 cut(s)	151, 801
Bsh1236I	CGCG	1 cut(s)	552
BshFI	GGCC	6 cut(s)	11, 156, 194, 331, 356, 606
BsiHKCI	CYCGRG	1 cut(s)	914
BsiSI	CCGG	7 cut(s)	248, 261, 341, 375, 386, 400, 630
BslFI	GGGAC	2 cut(s)	230, 540
BslI	CCNNNNNNNGG	5 cut(s)	340, 406, 563, 564, 801
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	230, 540
BsnI	GGCC	6 cut(s)	11, 156, 194, 331, 356, 606
Bso31I	GGTCTC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	914
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp143I	GATC	5 cut(s)	181, 409, 420, 862, 910
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	5 cut(s)	305, 358, 378, 550, 552
BspANI	GGCC	6 cut(s)	11, 156, 194, 331, 356, 606
BspFNI	CGCG	1 cut(s)	552
BspLI	GGNNCC	5 cut(s)	156, 157, 332, 411, 556
BspMI	ACCTGC	1 cut(s)	759
BspOI	GCTAGC	1 cut(s)	773
BspPI	GGATC	3 cut(s)	176, 404, 417
BspTNI	GGTCTC	1 cut(s)	375
BsrBI	CCGCTC	1 cut(s)	305
BsrDI	GCAATG	1 cut(s)	776
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	1 cut(s)	166
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	3 cut(s)	550, 601, 959
BssMI	GATC	5 cut(s)	181, 409, 420, 862, 910
BssT1I	CCWWGG	1 cut(s)	601
Bst2UI	CCWGG	5 cut(s)	191, 353, 813, 821, 960
Bst4CI	ACNGT	3 cut(s)	427, 562, 710
Bst6I	CTCTTC	2 cut(s)	44, 94
BstC8I	GCNNGC	2 cut(s)	358, 771
BstDEI	CTNAG	2 cut(s)	23, 622
BstDSI	CCRYGG	2 cut(s)	550, 601
BstF5I	GGATG	4 cut(s)	173, 319, 449, 838
BstFNI	CGCG	1 cut(s)	552
BstKTI	GATC	5 cut(s)	184, 412, 423, 865, 913
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	5 cut(s)	181, 409, 420, 862, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 362
BstNI	CCWGG	5 cut(s)	191, 353, 813, 821, 960
BstSCI	CCNGG	9 cut(s)	189, 246, 259, 351, 384, 399, 811, 819, 958
BstSLI	GKGCMC	1 cut(s)	158
BstUI	CGCG	1 cut(s)	552
BstV1I	GCAGC	1 cut(s)	376
BstV2I	GAAGAC	3 cut(s)	162, 640, 912
BstX2I	RGATCY	2 cut(s)	409, 862
BstYI	RGATCY	2 cut(s)	409, 862
BsuRI	GGCC	6 cut(s)	11, 156, 194, 331, 356, 606
BtgI	CCRYGG	2 cut(s)	550, 601
BtsCI	GGATG	4 cut(s)	173, 319, 449, 838
BtsIMutI	CAGTG	2 cut(s)	423, 558
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	2 cut(s)	358, 771
Cfr10I	RCCGGY	1 cut(s)	340
Cfr13I	GGNCC	8 cut(s)	154, 155, 193, 330, 349, 355, 554, 894
Cfr42I	CCGCGG	1 cut(s)	553
CsiI	ACCWGGT	1 cut(s)	811
Csp6I	GTAC	2 cut(s)	227, 428
CviAII	CATG	3 cut(s)	602, 653, 700
CviQI	GTAC	2 cut(s)	227, 428
DdeI	CTNAG	2 cut(s)	23, 622
DpnI	GATC	5 cut(s)	183, 411, 422, 864, 912
DpnII	GATC	5 cut(s)	181, 409, 420, 862, 910
DraIII	CACNNNGTG	1 cut(s)	815
EaeI	YGGCCR	1 cut(s)	604
Eam1104I	CTCTTC	2 cut(s)	44, 94
EarI	CTCTTC	2 cut(s)	44, 94
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	601
Eco147I	AGGCCT	1 cut(s)	11
Eco24I	GRGCYC	1 cut(s)	158
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	349, 554, 894
Eco57I	CTGAAG	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	914
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	511
EcoRII	CCWGG	5 cut(s)	189, 351, 811, 819, 958
EcoT14I	CCWWGG	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	158
ErhI	CCWWGG	1 cut(s)	601
FaeI	CATG	3 cut(s)	605, 656, 703
FaqI	GGGAC	2 cut(s)	230, 540
FatI	CATG	3 cut(s)	601, 652, 699
FauI	CCCGC	2 cut(s)	365, 557
FauNDI	CATATG	1 cut(s)	673
FbaI	TGATCA	1 cut(s)	420
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	4 cut(s)	160, 326, 456, 845
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	770
GluI	GCNGC	1 cut(s)	390
GsaI	CCCAGC	2 cut(s)	155, 805
HaeIII	GGCC	6 cut(s)	11, 156, 194, 331, 356, 606
HapII	CCGG	7 cut(s)	248, 261, 341, 375, 386, 400, 630
Hin1II	CATG	3 cut(s)	605, 656, 703
HincII	GTYRAC	3 cut(s)	296, 370, 937
HindII	GTYRAC	3 cut(s)	296, 370, 937
HinfI	GANTC	4 cut(s)	371, 583, 740, 849
HpaII	CCGG	7 cut(s)	248, 261, 341, 375, 386, 400, 630
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	296, 370, 937
Hpy188I	TCNGA	2 cut(s)	136, 414
Hpy188III	TCNNGA	3 cut(s)	274, 521, 842
Hpy8I	GTNNAC	3 cut(s)	296, 370, 937
HpyAV	CCTTC	5 cut(s)	55, 82, 141, 149, 434
HpyCH4III	ACNGT	3 cut(s)	427, 562, 710
HpyCH4IV	ACGT	2 cut(s)	278, 731
HpyCH4V	TGCA	3 cut(s)	671, 890, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 362
HpyF3I	CTNAG	2 cut(s)	23, 622
HpySE526I	ACGT	2 cut(s)	278, 731
Hsp92II	CATG	3 cut(s)	605, 656, 703
Ksp22I	TGATCA	1 cut(s)	420
KspI	CCGCGG	1 cut(s)	553
Kzo9I	GATC	5 cut(s)	181, 409, 420, 862, 910
LmnI	GCTCC	2 cut(s)	302, 778
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	434, 823
MabI	ACCWGGT	1 cut(s)	811
MaeI	CTAG	1 cut(s)	770
MaeII	ACGT	2 cut(s)	278, 731
MaeIII	GTNAC	3 cut(s)	18, 704, 727
MalI	GATC	5 cut(s)	183, 411, 422, 864, 912
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	5 cut(s)	181, 409, 420, 862, 910
MboII	GAAGA	7 cut(s)	31, 81, 84, 162, 461, 645, 917
MflI	RGATCY	2 cut(s)	409, 862
MhlI	GDGCHC	1 cut(s)	158
MlsI	TGGCCA	1 cut(s)	606
MluCI	AATT	5 cut(s)	269, 511, 524, 787, 883
MluNI	TGGCCA	1 cut(s)	606
MlyI	GAGTC	3 cut(s)	365, 592, 734
MmeI	TCCRAC	1 cut(s)	437
Mox20I	TGGCCA	1 cut(s)	606
MroXI	GAANNNNTTC	2 cut(s)	540, 687
MscI	TGGCCA	1 cut(s)	606
Msp20I	TGGCCA	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	552
MspI	CCGG	7 cut(s)	248, 261, 341, 375, 386, 400, 630
MspR9I	CCNGG	9 cut(s)	191, 248, 261, 353, 386, 401, 813, 821, 960
MvaI	CCWGG	5 cut(s)	191, 353, 813, 821, 960
MvnI	CGCG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	337, 362
NciI	CCSGG	4 cut(s)	248, 261, 386, 401
NcoI	CCATGG	1 cut(s)	601
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	5 cut(s)	181, 409, 420, 862, 910
NheI	GCTAGC	1 cut(s)	769
NlaIII	CATG	3 cut(s)	605, 656, 703
NlaIV	GGNNCC	5 cut(s)	156, 157, 332, 411, 556
NmuCI	GTSAC	2 cut(s)	18, 727
PceI	AGGCCT	1 cut(s)	11
PdmI	GAANNNNTTC	2 cut(s)	540, 687
PfeI	GAWTC	1 cut(s)	849
PflMI	CCANNNNNTGG	1 cut(s)	801
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	3 cut(s)	365, 591, 734
PpsI	GAGTC	3 cut(s)	365, 591, 734
Psp6I	CCWGG	5 cut(s)	189, 351, 811, 819, 958
PspFI	CCCAGC	2 cut(s)	151, 801
PspGI	CCWGG	5 cut(s)	189, 351, 811, 819, 958
PspN4I	GGNNCC	5 cut(s)	156, 157, 332, 411, 556
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	8 cut(s)	154, 155, 193, 330, 349, 355, 554, 894
PsuI	RGATCY	2 cut(s)	409, 862
RsaI	GTAC	2 cut(s)	228, 429
RsaNI	GTAC	2 cut(s)	227, 428
SacII	CCGCGG	1 cut(s)	553
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	5 cut(s)	181, 409, 420, 862, 910
Sau96I	GGNCC	8 cut(s)	154, 155, 193, 330, 349, 355, 554, 894
SchI	GAGTC	3 cut(s)	365, 592, 734
ScrFI	CCNGG	9 cut(s)	191, 248, 261, 353, 386, 401, 813, 821, 960
SduI	GDGCHC	1 cut(s)	158
SexAI	ACCWGGT	1 cut(s)	811
SfaNI	GCATC	2 cut(s)	434, 823
Sfr303I	CCGCGG	1 cut(s)	553
SgrBI	CCGCGG	1 cut(s)	553
SinI	GGWCC	3 cut(s)	349, 554, 894
Sse9I	AATT	5 cut(s)	269, 511, 524, 787, 883
SseBI	AGGCCT	1 cut(s)	11
SsiI	CCGC	5 cut(s)	305, 358, 378, 550, 552
SspMI	CTAG	1 cut(s)	770
StuI	AGGCCT	1 cut(s)	11
StyD4I	CCNGG	9 cut(s)	189, 246, 259, 351, 384, 399, 811, 819, 958
StyI	CCWWGG	1 cut(s)	601
TaaI	ACNGT	3 cut(s)	427, 562, 710
TaiI	ACGT	2 cut(s)	281, 734
TaqI	TCGA	1 cut(s)	965
TasI	AATT	5 cut(s)	269, 511, 524, 787, 883
TfiI	GAWTC	1 cut(s)	849
TscAI	CASTG	2 cut(s)	430, 565
TseFI	GTSAC	2 cut(s)	18, 727
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	18, 727
TspDTI	ATGAA	7 cut(s)	162, 484, 504, 641, 761, 918, 970
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	2 cut(s)	430, 565
Van91I	CCANNNNNTGG	1 cut(s)	801
VpaK11BI	GGWCC	3 cut(s)	349, 554, 894
XapI	RAATTY	4 cut(s)	269, 511, 524, 883
XmnI	GAANNNNTTC	2 cut(s)	540, 687
XspI	CTAG	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.