Rroxscaffold_6G00423530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008790
Physical Location & Seq
Reverse (-)
44635535 .. 44638989
3455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423530.1

Sequence Viewer

Length: 1020 bp
ATGGGGAAGCCCTCTCTCTCACTTAGATTGACACTACTCTTCTCCTTCTCTCTCACAGCTTCCTACTCCTTCACACTCTCTTCTTCTTTCCCAACTTCTCTCAAACAATCTTCACCATCTCCCAAAGCCACCCCTTCAGACCTTCTCTCTTTGCTGGGCCCCAAGTCCCAGTCTTCATCCATTGAGCCCCTCCTAGCCCAAGAACTCACTTCCTGCTTCAAGTTCCTCGTACCCTTTAGGCCCAACGCCAAGAAACTGGTCCCGGAGAAGTTTTCCGGTAGAAAATTCTTGAGGTTCGAGCAAAAAGGTCAACGAGAAGATGAGGAGGATGGGCTTGTTTGGTGGCCCCCTCAGCCGGTTTTGGAGCTGGCCCGCCTTGCCGTTGACTCCGGCGGAGACCCGGCTGCTATTCAACGGGCTTTGGATCCGACTATGATCACTGTACCTGATGTTGAAGGATCCGAAGAGAACCGATGTCAGCTTACCAGAACTCCATATGGGAGACATTTCATAAGTGAGGAGTTGAATTCTTATATTGGATTTTTATTTGAACTTATTCTTGCCCGCGGTCCCACTGTTGGGTTGAATGTGTCGTTGAATCGCTATGATTTGTTCCATGGCCACCTATTTCTTGCCTTAGACACTGGAAGACTTGGTATATTGTTTCATGCAAAAGAATACCCTGCATATGATAAAGAATTATTTCCATACAACATGGGTTTCTGTCAAAGAGGGTCTAATGTGACGTATGATGACTCAATGAACCTGCGAAATATCCTCTGGCTAGCTCCATTGCCAAGCAATTCAGCCAAAGGTTGGGAAGCACCAGGTGTCCTGGTGGTGCTCGATGCCCGTCCAGATGGAATCATATATAGAGATCTCATACCCGAATATGTAAATTTTGCAAGGACTATATATGAAGAAGGTGAGAGTTCATTCGTTTCGGTTTTACTGGTGGCAGATTGCATGTCAAGAGTCTTGGTGCGTGTGGCTCTGCTACTTCCTAGCATTGAACCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.81

Weight (kDa)

5.55

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 774
AccB7I CCANNNNNTGG 1 cut(s) 816
AccII CGCG 1 cut(s) 567
AciI CCGC 4 cut(s) 373, 393, 565, 567
AclWI GGATC 4 cut(s) 419, 432, 453, 466
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 3 cut(s) 284, 526, 898
AcuI CTGAAG 1 cut(s) 120
AdeI CACNNNGTG 1 cut(s) 830
AfaI GTAC 2 cut(s) 231, 444
AfiI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
AgsI TTSAA 8 cut(s) 220, 413, 455, 526, 551, 586, 598, 1013
AjnI CCWGG 2 cut(s) 826, 834
AluBI AGCT 4 cut(s) 59, 367, 481, 788
AluI AGCT 4 cut(s) 59, 367, 481, 788
Alw21I GWGCWC 1 cut(s) 846
Alw26I GTCTC 2 cut(s) 390, 496
AlwI GGATC 4 cut(s) 419, 432, 453, 466
AoxI GGCC 5 cut(s) 157, 239, 344, 369, 619
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 3 cut(s) 284, 526, 898
Asp700I GAANNNNTTC 2 cut(s) 555, 702
AspS9I GGNCC 7 cut(s) 157, 158, 240, 259, 345, 370, 569
AsuC2I CCSGG 2 cut(s) 263, 401
AsuHPI GGTGA 2 cut(s) 105, 938
AsuNHI GCTAGC 1 cut(s) 784
AvaII GGWCC 2 cut(s) 259, 569
BaeGI GKGCMC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 621
BamHI GGATCC 2 cut(s) 424, 458
BanII GRGCYC 2 cut(s) 161, 189
BbsI GAAGAC 2 cut(s) 165, 655
Bbv12I GWGCWC 1 cut(s) 846
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 391
BccI CCATC 3 cut(s) 124, 323, 854
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 828, 836
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 2 cut(s) 263, 401
BcoDI GTCTC 2 cut(s) 390, 496
BfaI CTAG 3 cut(s) 194, 785, 1005
BfuAI ACCTGC 1 cut(s) 774
BglII AGATCT 1 cut(s) 877
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 4 cut(s) 263, 401, 828, 836
Bme18I GGWCC 2 cut(s) 259, 569
BmgT120I GGNCC 7 cut(s) 157, 158, 240, 259, 345, 370, 569
BmiI GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 460, 571
BmrFI CCNGG 4 cut(s) 263, 401, 828, 836
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 838
BmtI GCTAGC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 165, 655
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 2 cut(s) 263, 401
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 565, 616
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 4 cut(s) 169, 261, 649, 957
Bse3DI GCAATG 1 cut(s) 791
BseBI CCWGG 2 cut(s) 828, 836
BseDI CCNNGG 2 cut(s) 565, 616
BseGI GGATG 2 cut(s) 176, 334
BseLI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 4 cut(s) 169, 261, 649, 957
BseRI GAGGAG 2 cut(s) 338, 533
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 5 cut(s) 159, 241, 346, 371, 621
BsiHKAI GWGCWC 1 cut(s) 846
BsiSI CCGG 5 cut(s) 263, 276, 356, 390, 401
BslFI GGGAC 3 cut(s) 151, 245, 555
BslI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
BsmAI GTCTC 2 cut(s) 390, 496
BsmFI GGGAC 3 cut(s) 151, 245, 555
BsnI GGCC 5 cut(s) 159, 241, 346, 371, 621
Bso31I GGTCTC 1 cut(s) 390
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 3 cut(s) 161, 189, 846
Bsp143I GATC 4 cut(s) 424, 435, 458, 877
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 4 cut(s) 373, 393, 565, 567
BspANI GGCC 5 cut(s) 159, 241, 346, 371, 621
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 460, 571
BspMI ACCTGC 1 cut(s) 774
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 4 cut(s) 419, 432, 453, 466
BspTNI GGTCTC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 4 cut(s) 169, 261, 649, 957
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 565, 616
BssMI GATC 4 cut(s) 424, 435, 458, 877
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 828, 836
Bst4CI ACNGT 2 cut(s) 442, 577
Bst6I CTCTTC 3 cut(s) 44, 85, 459
BstC8I GCNNGC 4 cut(s) 369, 373, 565, 786
BstDEI CTNAG 3 cut(s) 23, 351, 637
BstDSI CCRYGG 2 cut(s) 565, 616
BstF5I GGATG 2 cut(s) 176, 334
BstFNI CGCG 1 cut(s) 567
BstKTI GATC 4 cut(s) 427, 438, 461, 880
BstMAI GTCTC 2 cut(s) 390, 496
BstMBI GATC 4 cut(s) 424, 435, 458, 877
BstMWI GCNNNNNNNGC 2 cut(s) 352, 377
BstNI CCWGG 2 cut(s) 828, 836
BstNSI RCATGY 1 cut(s) 970
BstSCI CCNGG 4 cut(s) 261, 399, 826, 834
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 165, 655
BstX2I RGATCY 3 cut(s) 424, 458, 877
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 3 cut(s) 424, 458, 877
BsuRI GGCC 5 cut(s) 159, 241, 346, 371, 621
BtgI CCRYGG 2 cut(s) 565, 616
BtsCI GGATG 2 cut(s) 176, 334
BtsIMutI CAGTG 3 cut(s) 438, 573, 642
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 4 cut(s) 369, 373, 565, 786
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 7 cut(s) 157, 158, 240, 259, 345, 370, 569
Cfr42I CCGCGG 1 cut(s) 568
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 2 cut(s) 230, 443
CviAII CATG 4 cut(s) 617, 668, 715, 967
CviQI GTAC 2 cut(s) 230, 443
DdeI CTNAG 3 cut(s) 23, 351, 637
DpnI GATC 4 cut(s) 426, 437, 460, 879
DpnII GATC 4 cut(s) 424, 435, 458, 877
DraIII CACNNNGTG 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 3 cut(s) 44, 85, 459
EarI CTCTTC 3 cut(s) 44, 85, 459
EciI GGCGGA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 2 cut(s) 161, 189
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 259, 569
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 826, 834
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 2 cut(s) 161, 189
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 4 cut(s) 620, 671, 718, 970
FaqI GGGAC 3 cut(s) 151, 245, 555
FatI CATG 4 cut(s) 616, 667, 714, 966
FauI CCCGC 2 cut(s) 380, 572
FauNDI CATATG 2 cut(s) 496, 688
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 163, 341
FriOI GRGCYC 2 cut(s) 161, 189
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 3 cut(s) 194, 785, 1005
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 5 cut(s) 159, 241, 346, 371, 621
HapII CCGG 5 cut(s) 263, 276, 356, 390, 401
Hin1II CATG 4 cut(s) 620, 671, 718, 970
HincII GTYRAC 2 cut(s) 311, 385
HindII GTYRAC 2 cut(s) 311, 385
HinfI GANTC 5 cut(s) 386, 598, 755, 864, 975
HpaII CCGG 5 cut(s) 263, 276, 356, 390, 401
HphI GGTGA 2 cut(s) 105, 938
Hpy166II GTNNAC 2 cut(s) 311, 385
Hpy188I TCNGA 3 cut(s) 139, 429, 463
Hpy188III TCNNGA 3 cut(s) 289, 857, 972
Hpy8I GTNNAC 2 cut(s) 311, 385
HpyAV CCTTC 6 cut(s) 55, 79, 144, 152, 449, 917
HpyCH4III ACNGT 2 cut(s) 442, 577
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 4 cut(s) 671, 686, 905, 966
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 377
HpyF3I CTNAG 3 cut(s) 23, 351, 637
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 4 cut(s) 620, 671, 718, 970
Ksp22I TGATCA 1 cut(s) 435
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 4 cut(s) 424, 435, 458, 877
LmnI GCTCC 2 cut(s) 364, 793
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 838
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 3 cut(s) 194, 785, 1005
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 1 cut(s) 742
MalI GATC 4 cut(s) 426, 437, 460, 879
MboI GATC 4 cut(s) 424, 435, 458, 877
MboII GAAGA 9 cut(s) 31, 72, 75, 102, 165, 329, 476, 660, 932
MflI RGATCY 3 cut(s) 424, 458, 877
MhlI GDGCHC 3 cut(s) 161, 189, 846
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 5 cut(s) 284, 526, 698, 802, 898
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 3 cut(s) 380, 749, 984
MmeI TCCRAC 1 cut(s) 452
Mox20I TGGCCA 1 cut(s) 621
MroXI GAANNNNTTC 2 cut(s) 555, 702
MscI TGGCCA 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 5 cut(s) 263, 276, 356, 390, 401
MspR9I CCNGG 4 cut(s) 263, 401, 828, 836
MvaI CCWGG 2 cut(s) 828, 836
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 352, 377
NciI CCSGG 2 cut(s) 263, 401
NcoI CCATGG 1 cut(s) 616
NdeI CATATG 2 cut(s) 496, 688
NdeII GATC 4 cut(s) 424, 435, 458, 877
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 4 cut(s) 620, 671, 718, 970
NlaIV GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 460, 571
NmuCI GTSAC 1 cut(s) 742
NspI RCATGY 1 cut(s) 970
PdmI GAANNNNTTC 2 cut(s) 555, 702
PfeI GAWTC 2 cut(s) 598, 864
PflMI CCANNNNNTGG 1 cut(s) 816
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 3 cut(s) 380, 749, 983
PpsI GAGTC 3 cut(s) 380, 749, 983
Psp6I CCWGG 2 cut(s) 826, 834
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 826, 834
PspN4I GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 460, 571
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 7 cut(s) 157, 158, 240, 259, 345, 370, 569
PsuI RGATCY 3 cut(s) 424, 458, 877
RsaI GTAC 2 cut(s) 231, 444
RsaNI GTAC 2 cut(s) 230, 443
SacII CCGCGG 1 cut(s) 568
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 4 cut(s) 424, 435, 458, 877
Sau96I GGNCC 7 cut(s) 157, 158, 240, 259, 345, 370, 569
SchI GAGTC 3 cut(s) 380, 749, 984
ScrFI CCNGG 4 cut(s) 263, 401, 828, 836
SduI GDGCHC 3 cut(s) 161, 189, 846
SexAI ACCWGGT 1 cut(s) 826
SfaNI GCATC 1 cut(s) 838
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 2 cut(s) 259, 569
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 5 cut(s) 284, 526, 698, 802, 898
SsiI CCGC 4 cut(s) 373, 393, 565, 567
SspMI CTAG 3 cut(s) 194, 785, 1005
StyD4I CCNGG 4 cut(s) 261, 399, 826, 834
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 442, 577
TaiI ACGT 1 cut(s) 749
TaqI TCGA 2 cut(s) 297, 846
TasI AATT 5 cut(s) 284, 526, 698, 802, 898
TfiI GAWTC 2 cut(s) 598, 864
TscAI CASTG 3 cut(s) 445, 580, 649
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 6 cut(s) 165, 499, 656, 776, 924, 933
TspRI CASTG 3 cut(s) 445, 580, 649
Van91I CCANNNNNTGG 1 cut(s) 816
VpaK11BI GGWCC 2 cut(s) 259, 569
XapI RAATTY 3 cut(s) 284, 526, 898
XceI RCATGY 1 cut(s) 970
XmnI GAANNNNTTC 2 cut(s) 555, 702
XspI CTAG 3 cut(s) 194, 785, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.