Rw3G005920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008790
Physical Location & Seq
Forward (+)
5289855 .. 5293293
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005920.1

Sequence Viewer

Length: 888 bp
ATGGGGAAGCCCTCTCTCTCACTTAGATTCACACTTCTCTTCTCCTTCTCTCTCACAGCGTCCTACTCCTTCACACCCACTTCTTCTTTCCCAACTTCTCTCAAACAATCTTCACCATCTCCCAAAGCCACCCCTTCAGACCTTCTCTCTCTGCTGGGCCCCAAATCCCAGTCTTCATCCGTTGAGCCCCTCCTGGCCCAAGAACTCACTTCCTGCTTCAAGTTCCTCGTACCCTTTAGGCCCAACGCCAAGAAACTGGTCCCGGAGAAGTTTTCCGGTAGAAAATTCTTGAGGTTCGAGCAAAAGGGTCAACGAGAAGATGAGGAGGATGGGCTTGTTTGGTGGCCCCCTCAGCCGGTTTTGGAGCTGGCCCGCCTTGCCGTTGACTCCGGCGGAGACCCGGCTGCTATTCAACGGGCTTTGGATCCGACTATGATCACTGTACCTGATGTTGAAGGATCTGAAGAGAACCGATGTCAGCTTACCAGAACTCCATATGGGAGACATTTCATAAGTGAGGAGTTGAATTCATATATTGGATTTTTATTTGAACTTATTCTTGCCCGCGGTCCCACTGTTGGGTTGAATGTGTCGTTGAATCGCTATGATTTGTTCCATGGCCACCTATTTCTTGCCTTAGACACTGGAAGACTTGGTATATTGTTTCATGCGAAAGAATACCCTGCATATGATAAAGAATTATTTCCATACAACATGGGTTTCTGTCAAAGAGGGTCTAATGTGACGTATGATGACTCAATGAACCTGCGAAATATCCTCTGGCTAGCGCCATTGCCAAGCAATTCAGCCAAAGGTTGGGAAGCACCAGGTACCTCTCCCTTACAATTAGAATCTATAGGAAGTTGGAATGTCTTTCTGAACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

295

Amino Acids

32.93

Weight (kDa)

6.13

Isoelectric Point (pI)

51.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 774
Acc65I GGTACC 1 cut(s) 830
AccB1I GGYRCC 1 cut(s) 830
AccB7I CCANNNNNTGG 1 cut(s) 816
AccII CGCG 1 cut(s) 567
AciI CCGC 4 cut(s) 373, 393, 565, 567
AclWI GGATC 3 cut(s) 419, 432, 466
AcoI YGGCCR 1 cut(s) 619
AcsI RAATTY 2 cut(s) 284, 526
AcuI CTGAAG 2 cut(s) 120, 483
AfaI GTAC 3 cut(s) 231, 444, 832
AfiI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
AgsI TTSAA 7 cut(s) 220, 413, 455, 526, 551, 586, 598
AjnI CCWGG 2 cut(s) 192, 826
AluBI AGCT 2 cut(s) 367, 481
AluI AGCT 2 cut(s) 367, 481
Alw26I GTCTC 2 cut(s) 390, 496
AlwI GGATC 3 cut(s) 419, 432, 466
AoxI GGCC 6 cut(s) 157, 195, 239, 344, 369, 619
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 284, 526
Asp700I GAANNNNTTC 2 cut(s) 555, 702
Asp718I GGTACC 1 cut(s) 830
AspLEI GCGC 1 cut(s) 790
AspS9I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 345, 370, 569
AsuC2I CCSGG 2 cut(s) 263, 401
AsuHPI GGTGA 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 784
AvaII GGWCC 2 cut(s) 259, 569
BaeGI GKGCMC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 621
BamHI GGATCC 1 cut(s) 424
BanI GGYRCC 1 cut(s) 830
BanII GRGCYC 2 cut(s) 161, 189
BbsI GAAGAC 2 cut(s) 165, 655
BbvCI CCTCAGC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 124, 323
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 194, 828
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 2 cut(s) 263, 401
BcoDI GTCTC 2 cut(s) 390, 496
BfaI CTAG 1 cut(s) 785
BfmI CTRYAG 1 cut(s) 855
BfoI RGCGCY 1 cut(s) 791
BfuAI ACCTGC 1 cut(s) 774
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 4 cut(s) 194, 263, 401, 828
Bme18I GGWCC 2 cut(s) 259, 569
BmgT120I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 345, 370, 569
BmiI GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 571, 832
BmrFI CCNGG 4 cut(s) 194, 263, 401, 828
BmrI ACTGGG 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 165, 655
Bpu10I CCTNAGC 1 cut(s) 351
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 2 cut(s) 263, 401
BsaI GGTCTC 1 cut(s) 390
BsaJI CCNNGG 2 cut(s) 565, 616
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 475, 505
Bsc4I CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
Bse118I RCCGGY 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 169, 261, 649
Bse3DI GCAATG 1 cut(s) 791
BseBI CCWGG 2 cut(s) 194, 828
BseDI CCNNGG 2 cut(s) 565, 616
BseGI GGATG 2 cut(s) 176, 334
BseLI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 1 cut(s) 365
BseNI ACTGG 3 cut(s) 169, 261, 649
BseRI GAGGAG 2 cut(s) 338, 533
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 6 cut(s) 159, 197, 241, 346, 371, 621
BshNI GGYRCC 1 cut(s) 830
BsiSI CCGG 5 cut(s) 263, 276, 356, 390, 401
BslFI GGGAC 2 cut(s) 245, 555
BslI CCNNNNNNNGG 4 cut(s) 355, 578, 579, 816
BsmAI GTCTC 2 cut(s) 390, 496
BsmFI GGGAC 2 cut(s) 245, 555
BsnI GGCC 6 cut(s) 159, 197, 241, 346, 371, 621
Bso31I GGTCTC 1 cut(s) 390
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 2 cut(s) 161, 189
Bsp143I GATC 3 cut(s) 424, 435, 458
Bsp19I CCATGG 1 cut(s) 616
BspACI CCGC 4 cut(s) 373, 393, 565, 567
BspANI GGCC 6 cut(s) 159, 197, 241, 346, 371, 621
BspCNI CTCAG 1 cut(s) 364
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 571, 832
BspMI ACCTGC 1 cut(s) 774
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 3 cut(s) 419, 432, 466
BspT107I GGYRCC 1 cut(s) 830
BspTNI GGTCTC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 791
BsrFI RCCGGY 1 cut(s) 355
BsrI ACTGG 3 cut(s) 169, 261, 649
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 565, 616
BssMI GATC 3 cut(s) 424, 435, 458
BssT1I CCWWGG 1 cut(s) 616
Bst2UI CCWGG 2 cut(s) 194, 828
Bst4CI ACNGT 2 cut(s) 442, 577
Bst6I CTCTTC 2 cut(s) 44, 459
BstC8I GCNNGC 4 cut(s) 369, 373, 565, 786
BstDEI CTNAG 3 cut(s) 23, 351, 637
BstDSI CCRYGG 2 cut(s) 565, 616
BstF5I GGATG 2 cut(s) 176, 334
BstFNI CGCG 1 cut(s) 567
BstH2I RGCGCY 1 cut(s) 791
BstHHI GCGC 1 cut(s) 790
BstKTI GATC 3 cut(s) 427, 438, 461
BstMAI GTCTC 2 cut(s) 390, 496
BstMBI GATC 3 cut(s) 424, 435, 458
BstMWI GCNNNNNNNGC 2 cut(s) 352, 377
BstNI CCWGG 2 cut(s) 194, 828
BstSCI CCNGG 4 cut(s) 192, 261, 399, 826
BstSFI CTRYAG 1 cut(s) 855
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 2 cut(s) 165, 655
BstX2I RGATCY 2 cut(s) 424, 458
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 2 cut(s) 424, 458
BsuRI GGCC 6 cut(s) 159, 197, 241, 346, 371, 621
BtgI CCRYGG 2 cut(s) 565, 616
BtsCI GGATG 2 cut(s) 176, 334
BtsIMutI CAGTG 3 cut(s) 438, 573, 642
BveI ACCTGC 1 cut(s) 774
Cac8I GCNNGC 4 cut(s) 369, 373, 565, 786
CfoI GCGC 1 cut(s) 790
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 345, 370, 569
Cfr42I CCGCGG 1 cut(s) 568
CseI GACGC 1 cut(s) 48
CsiI ACCWGGT 1 cut(s) 826
Csp6I GTAC 3 cut(s) 230, 443, 831
CviAII CATG 3 cut(s) 617, 668, 715
CviQI GTAC 3 cut(s) 230, 443, 831
DdeI CTNAG 3 cut(s) 23, 351, 637
DpnI GATC 3 cut(s) 426, 437, 460
DpnII GATC 3 cut(s) 424, 435, 458
EaeI YGGCCR 1 cut(s) 619
Eam1104I CTCTTC 2 cut(s) 44, 459
EarI CTCTTC 2 cut(s) 44, 459
EciI GGCGGA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 616
Eco24I GRGCYC 2 cut(s) 161, 189
Eco31I GGTCTC 1 cut(s) 390
Eco47I GGWCC 2 cut(s) 259, 569
Eco57I CTGAAG 2 cut(s) 120, 483
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 2 cut(s) 192, 826
EcoT14I CCWWGG 1 cut(s) 616
EcoT38I GRGCYC 2 cut(s) 161, 189
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 3 cut(s) 620, 671, 718
FaqI GGGAC 2 cut(s) 245, 555
FatI CATG 3 cut(s) 616, 667, 714
FauI CCCGC 2 cut(s) 380, 572
FauNDI CATATG 2 cut(s) 496, 688
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 163, 341
FriOI GRGCYC 2 cut(s) 161, 189
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 785
GlaI GCGC 1 cut(s) 789
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 158
HaeII RGCGCY 1 cut(s) 791
HaeIII GGCC 6 cut(s) 159, 197, 241, 346, 371, 621
HapII CCGG 5 cut(s) 263, 276, 356, 390, 401
HgaI GACGC 1 cut(s) 48
HhaI GCGC 1 cut(s) 790
Hin1II CATG 3 cut(s) 620, 671, 718
Hin6I GCGC 1 cut(s) 788
HinP1I GCGC 1 cut(s) 788
HincII GTYRAC 2 cut(s) 311, 385
HindII GTYRAC 2 cut(s) 311, 385
HinfI GANTC 5 cut(s) 27, 386, 598, 755, 851
HpaII CCGG 5 cut(s) 263, 276, 356, 390, 401
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 2 cut(s) 311, 385
Hpy188I TCNGA 4 cut(s) 139, 429, 463, 879
Hpy188III TCNNGA 1 cut(s) 289
Hpy8I GTNNAC 2 cut(s) 311, 385
HpyAV CCTTC 5 cut(s) 55, 79, 144, 152, 449
HpyCH4III ACNGT 2 cut(s) 442, 577
HpyCH4IV ACGT 1 cut(s) 746
HpyCH4V TGCA 1 cut(s) 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 352, 377
HpyF3I CTNAG 3 cut(s) 23, 351, 637
HpySE526I ACGT 1 cut(s) 746
Hsp92II CATG 3 cut(s) 620, 671, 718
HspAI GCGC 1 cut(s) 788
KpnI GGTACC 1 cut(s) 834
Ksp22I TGATCA 1 cut(s) 435
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 3 cut(s) 424, 435, 458
LmnI GCTCC 1 cut(s) 364
Lsp1109I GCAGC 1 cut(s) 391
MabI ACCWGGT 1 cut(s) 826
MaeI CTAG 1 cut(s) 785
MaeII ACGT 1 cut(s) 746
MaeIII GTNAC 1 cut(s) 742
MalI GATC 3 cut(s) 426, 437, 460
MboI GATC 3 cut(s) 424, 435, 458
MboII GAAGA 7 cut(s) 31, 75, 102, 165, 329, 476, 660
MflI RGATCY 2 cut(s) 424, 458
MhlI GDGCHC 2 cut(s) 161, 189
MlsI TGGCCA 1 cut(s) 621
MluCI AATT 5 cut(s) 284, 526, 698, 802, 845
MluNI TGGCCA 1 cut(s) 621
MlyI GAGTC 2 cut(s) 380, 749
MmeI TCCRAC 2 cut(s) 452, 845
Mox20I TGGCCA 1 cut(s) 621
MroXI GAANNNNTTC 2 cut(s) 555, 702
MscI TGGCCA 1 cut(s) 621
Msp20I TGGCCA 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 5 cut(s) 263, 276, 356, 390, 401
MspR9I CCNGG 4 cut(s) 194, 263, 401, 828
MvaI CCWGG 2 cut(s) 194, 828
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 352, 377
NciI CCSGG 2 cut(s) 263, 401
NcoI CCATGG 1 cut(s) 616
NdeI CATATG 2 cut(s) 496, 688
NdeII GATC 3 cut(s) 424, 435, 458
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 3 cut(s) 620, 671, 718
NlaIV GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 571, 832
NmuCI GTSAC 1 cut(s) 742
PdmI GAANNNNTTC 2 cut(s) 555, 702
PfeI GAWTC 3 cut(s) 27, 598, 851
PflMI CCANNNNNTGG 1 cut(s) 816
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 2 cut(s) 380, 749
PpsI GAGTC 2 cut(s) 380, 749
Psp6I CCWGG 2 cut(s) 192, 826
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 2 cut(s) 192, 826
PspN4I GGNNCC 7 cut(s) 159, 160, 261, 347, 426, 571, 832
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 8 cut(s) 157, 158, 196, 240, 259, 345, 370, 569
PsuI RGATCY 2 cut(s) 424, 458
RsaI GTAC 3 cut(s) 231, 444, 832
RsaNI GTAC 3 cut(s) 230, 443, 831
SacII CCGCGG 1 cut(s) 568
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 3 cut(s) 424, 435, 458
Sau96I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 345, 370, 569
SchI GAGTC 2 cut(s) 380, 749
ScrFI CCNGG 4 cut(s) 194, 263, 401, 828
SduI GDGCHC 2 cut(s) 161, 189
SexAI ACCWGGT 1 cut(s) 826
SfcI CTRYAG 1 cut(s) 855
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 2 cut(s) 259, 569
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 5 cut(s) 284, 526, 698, 802, 845
SsiI CCGC 4 cut(s) 373, 393, 565, 567
SspMI CTAG 1 cut(s) 785
StyD4I CCNGG 4 cut(s) 192, 261, 399, 826
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 2 cut(s) 442, 577
TaiI ACGT 1 cut(s) 749
TaqI TCGA 1 cut(s) 297
TasI AATT 5 cut(s) 284, 526, 698, 802, 845
TfiI GAWTC 3 cut(s) 27, 598, 851
TscAI CASTG 3 cut(s) 445, 580, 649
TseFI GTSAC 1 cut(s) 742
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 742
TspDTI ATGAA 5 cut(s) 165, 499, 519, 656, 776
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 445, 580, 649
Van91I CCANNNNNTGG 1 cut(s) 816
VpaK11BI GGWCC 2 cut(s) 259, 569
XapI RAATTY 2 cut(s) 284, 526
XmnI GAANNNNTTC 2 cut(s) 555, 702
XspI CTAG 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.