Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0008790

Physical Location & Seq

Genomic Coordinates Reverse (-)

19985128 .. 19986895

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17690.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGGGAAGCCCTCTCTGTCACTCCGACTGACAATCTTCCTCTCCCTCTCTCTCACTGCTTCCTACTCCATCTCAGCCTCTTCATCTTCCCCAATCTTTCCACGACGATCTTCTCCAAACCCTTCTCTCAAAGCCACTCCTTCGGACCTGCTCTCTCTGCTGGGCCCCAAATCCCACTCTTCGTCCGTTGACCCCATTGTTGCCCAAGAACTCACTTCCTGCTTCAGATTCCTCGTGCCCTTTTCGCCAATTGCCAAGGGAAATTGCCCGCCAAGTTATTCGAATCGGAAAGTCTTGAGCTTGAAGCATAAGGGTGGTGATTTGTGTCAGCGGGAGGAGGATGAGCTCGTTTGGTGGCCTCCTCGGCCGGTTTTGGAGCTGGCTCGCCTGGCTGTTGACTCCGGCGGAGACCCGGCTGCGATTCAACGCGCTTTGGATCCGACTATGATCACTGTGCCTGATGTTGAAGGATCGAGAGAGGACCGATGCGAGCTTACTAGAACTCCGTATGGGAGACGATTCATAAGTGAGGAGTTGAATTCATATCTTGAATTTTTGTTTGAACTTATTCTTGCTCGGGGTCCCGATATTGGATTGAACGTGTCGTTGAGTCGCTATGATTTATTCCATGGACACCTTTTTCTTGCCATAGACAGTGGAAGACTTGGTATATTGTTCCATGCCAAAGAATACCCTGCATATGATAAGGAAGTATTTCCATACAACATGGGATACTGTCAAGTAGGGTCGAATGTGACATATGATGATTCAATGAACTTGCGAAACATCCTCTGGCTTGCTCCATTGCCAAGCGATTCAACCAAAGCTTGGGCAGCACCAGGTGTCCTTGTAGCACTGGATGCCCGTCCAGATGGAATCATATATAAGGATCGATCATACCTGAATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

304

Amino Acids

33.56

Weight (kDa)

6.23

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27710 AT5G27710
fragaria_vesca	FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560
malus_domestica	MD04G1200800.v1.1
prunus_persica	Prupe.6G320900_v2.0.a1
pyrus_communis	pycom04g17690
rosa_chinensis	RchiOBHm_Chr3g0455711
rosa_laevigata	RLG00000025337
rosa_multiflora	Rmu_sc0002050.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423530 Rroxscaffold_6G00424030
rosa_rugosa	Rorug03G0009300 Rorug03G0009300
rosa_samantha	Rh3AG069000 Rh3BG071500 Rh3CG069800 Rh3DG072200
rosa_wichuraiana	Rw3G005570 Rw3G005920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	156
AccB7I	CCANNNNNTGG	1 cut(s)	828
AccII	CGCG	1 cut(s)	429
AciI	CCGC	3 cut(s)	269, 331, 405
AclWI	GGATC	4 cut(s)	431, 444, 478, 897
AcoI	YGGCCR	1 cut(s)	365
AcsI	RAATTY	2 cut(s)	538, 551
AcuI	CTGAAG	1 cut(s)	208
AdeI	CACNNNGTG	1 cut(s)	842
AfiI	CCNNNNNNNGG	2 cut(s)	590, 828
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	9 cut(s)	304, 425, 467, 538, 551, 563, 598, 771, 819
AjnI	CCWGG	2 cut(s)	387, 838
AluBI	AGCT	5 cut(s)	300, 346, 379, 493, 827
AluI	AGCT	5 cut(s)	300, 346, 379, 493, 827
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	2 cut(s)	402, 508
AlwI	GGATC	4 cut(s)	431, 444, 478, 897
Ama87I	CYCGRG	1 cut(s)	576
AoxI	GGCC	3 cut(s)	163, 356, 365
ApaI	GGGCCC	1 cut(s)	167
ApeKI	GCWGC	2 cut(s)	416, 833
ApoI	RAATTY	2 cut(s)	538, 551
Asp700I	GAANNNNTTC	2 cut(s)	567, 714
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	5 cut(s)	145, 163, 164, 481, 581
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	3 cut(s)	145, 481, 581
BaeGI	GKGCMC	2 cut(s)	167, 240
BamHI	GGATCC	1 cut(s)	436
BanII	GRGCYC	2 cut(s)	167, 348
BauI	CACGAG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	403, 845
BccI	CCATC	2 cut(s)	77, 866
BciT130I	CCWGG	2 cut(s)	389, 840
BciVI	GTATCC	1 cut(s)	725
BclI	TGATCA	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	402, 508
BfaI	CTAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	725
BglI	GCCNNNNNGGC	1 cut(s)	364
BisI	GCNGC	2 cut(s)	417, 834
BlsI	GCNGC	2 cut(s)	418, 835
Bme1390I	CCNGG	3 cut(s)	389, 413, 840
Bme18I	GGWCC	3 cut(s)	145, 481, 581
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	5 cut(s)	145, 163, 164, 481, 581
BmiI	GGNNCC	5 cut(s)	165, 166, 438, 582, 583
BmrFI	CCNGG	3 cut(s)	389, 413, 840
BmsI	GCATC	2 cut(s)	476, 850
BpiI	GAAGAC	1 cut(s)	667
Bpu14I	TTCGAA	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	413
Bsa29I	ATCGAT	1 cut(s)	892
BsaI	GGTCTC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	255, 362, 628
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 828
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	861
Bse3DI	GCAATG	1 cut(s)	803
BseBI	CCWGG	2 cut(s)	389, 840
BseCI	ATCGAT	1 cut(s)	892
BseDI	CCNNGG	3 cut(s)	255, 362, 628
BseGI	GGATG	3 cut(s)	346, 786, 865
BseLI	CCNNNNNNNGG	2 cut(s)	590, 828
BseMI	GCAATG	1 cut(s)	803
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	861
BseRI	GAGGAG	3 cut(s)	350, 351, 545
BseSI	GKGCMC	2 cut(s)	167, 240
BseX3I	CGGCCG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	403, 845
BseYI	CCCAGC	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	3 cut(s)	165, 358, 367
BshVI	ATCGAT	1 cut(s)	892
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	348
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	3 cut(s)	368, 402, 413
BslFI	GGGAC	1 cut(s)	567
BslI	CCNNNNNNNGG	2 cut(s)	590, 828
BsmAI	GTCTC	2 cut(s)	402, 508
BsmBI	CGTCTC	1 cut(s)	508
BsmFI	GGGAC	1 cut(s)	567
BsnI	GGCC	3 cut(s)	165, 358, 367
Bso31I	GGTCTC	1 cut(s)	402
BsoBI	CYCGRG	1 cut(s)	576
Bsp119I	TTCGAA	1 cut(s)	281
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	3 cut(s)	167, 240, 348
Bsp143I	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
Bsp19I	CCATGG	1 cut(s)	628
BspACI	CCGC	3 cut(s)	269, 331, 405
BspANI	GGCC	3 cut(s)	165, 358, 367
BspCNI	CTCAG	1 cut(s)	86
BspDI	ATCGAT	1 cut(s)	892
BspFNI	CGCG	1 cut(s)	429
BspLI	GGNNCC	5 cut(s)	165, 166, 438, 582, 583
BspMI	ACCTGC	1 cut(s)	156
BspPI	GGATC	4 cut(s)	431, 444, 478, 897
BspT104I	TTCGAA	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	402
BsrDI	GCAATG	1 cut(s)	803
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	1 cut(s)	861
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	3 cut(s)	255, 362, 628
BssMI	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
BssSI	CACGAG	1 cut(s)	233
BssT1I	CCWWGG	2 cut(s)	255, 628
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	2 cut(s)	389, 840
Bst4CI	ACNGT	3 cut(s)	454, 656, 737
Bst6I	CTCTTC	2 cut(s)	85, 184
BstAPI	GCANNNNNTGC	1 cut(s)	860
BstBI	TTCGAA	1 cut(s)	281
BstC8I	GCNNGC	5 cut(s)	269, 381, 385, 491, 798
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	628
BstF5I	GGATG	3 cut(s)	346, 786, 865
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	6 cut(s)	110, 439, 450, 473, 892, 896
BstMAI	GTCTC	2 cut(s)	402, 508
BstMBI	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 244, 364, 389, 833, 860
BstNI	CCWGG	2 cut(s)	389, 840
BstSCI	CCNGG	3 cut(s)	387, 411, 838
BstSLI	GKGCMC	2 cut(s)	167, 240
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	403, 845
BstV2I	GAAGAC	1 cut(s)	667
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BstZI	CGGCCG	1 cut(s)	365
Bsu15I	ATCGAT	1 cut(s)	892
BsuI	GTATCC	1 cut(s)	725
BsuRI	GGCC	3 cut(s)	165, 358, 367
BsuTUI	ATCGAT	1 cut(s)	892
BtgI	CCRYGG	1 cut(s)	628
BtsCI	GGATG	3 cut(s)	346, 786, 865
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	4 cut(s)	54, 450, 661, 854
BveI	ACCTGC	1 cut(s)	156
Cac8I	GCNNGC	5 cut(s)	269, 381, 385, 491, 798
CfoI	GCGC	1 cut(s)	431
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	5 cut(s)	145, 163, 164, 481, 581
ClaI	ATCGAT	1 cut(s)	892
CsiI	ACCWGGT	1 cut(s)	838
CviAII	CATG	3 cut(s)	629, 680, 727
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	6 cut(s)	109, 438, 449, 472, 891, 895
DpnII	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
DraIII	CACNNNGTG	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	365
EagI	CGGCCG	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	85, 184
EarI	CTCTTC	2 cut(s)	85, 184
EciI	GGCGGA	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	346
EclXI	CGGCCG	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	255, 628
Eco24I	GRGCYC	2 cut(s)	167, 348
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	3 cut(s)	145, 481, 581
Eco52I	CGGCCG	1 cut(s)	365
Eco53kI	GAGCTC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	576
EcoICRI	GAGCTC	1 cut(s)	346
EcoO109I	RGGNCCY	2 cut(s)	164, 581
EcoRI	GAATTC	1 cut(s)	538
EcoRII	CCWGG	2 cut(s)	387, 838
EcoT14I	CCWWGG	2 cut(s)	255, 628
EcoT38I	GRGCYC	2 cut(s)	167, 348
ErhI	CCWWGG	2 cut(s)	255, 628
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	3 cut(s)	632, 683, 730
FaqI	GGGAC	1 cut(s)	567
FatI	CATG	3 cut(s)	628, 679, 726
FauI	CCCGC	2 cut(s)	276, 324
FauNDI	CATATG	2 cut(s)	700, 760
FbaI	TGATCA	1 cut(s)	447
Fnu4HI	GCNGC	2 cut(s)	417, 834
FokI	GGATG	3 cut(s)	353, 773, 872
FriOI	GRGCYC	2 cut(s)	167, 348
Fsp4HI	GCNGC	2 cut(s)	417, 834
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	2 cut(s)	417, 834
GsaI	CCCAGC	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	165, 358, 367
HapII	CCGG	3 cut(s)	368, 402, 413
HhaI	GCGC	1 cut(s)	431
Hin1II	CATG	3 cut(s)	632, 683, 730
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	2 cut(s)	190, 397
HindII	GTYRAC	2 cut(s)	190, 397
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	9 cut(s)	228, 283, 398, 421, 519, 610, 767, 815, 876
HpaII	CCGG	3 cut(s)	368, 402, 413
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	190, 397
Hpy188I	TCNGA	5 cut(s)	26, 145, 227, 288, 441
Hpy188III	TCNNGA	5 cut(s)	295, 474, 548, 584, 869
Hpy8I	GTNNAC	2 cut(s)	190, 397
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	132, 150, 461
HpyCH4III	ACNGT	3 cut(s)	454, 656, 737
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	1 cut(s)	698
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 244, 364, 389, 833, 860
HpyF3I	CTNAG	1 cut(s)	73
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	3 cut(s)	632, 683, 730
HspAI	GCGC	1 cut(s)	429
KflI	GGGWCCC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	447
Kzo9I	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
LmnI	GCTCC	2 cut(s)	376, 805
Lsp1109I	GCAGC	2 cut(s)	403, 845
LweI	GCATC	2 cut(s)	476, 850
MabI	ACCWGGT	1 cut(s)	838
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	18, 754
MalI	GATC	6 cut(s)	109, 438, 449, 472, 891, 895
MboI	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
MboII	GAAGA	6 cut(s)	28, 72, 78, 102, 171, 672
MfeI	CAATTG	1 cut(s)	249
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	3 cut(s)	167, 240, 348
MluCI	AATT	4 cut(s)	249, 262, 538, 551
MlyI	GAGTC	2 cut(s)	392, 619
MmeI	TCCRAC	2 cut(s)	49, 464
MroXI	GAANNNNTTC	2 cut(s)	567, 714
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	331
MspI	CCGG	3 cut(s)	368, 402, 413
MspR9I	CCNGG	3 cut(s)	389, 413, 840
MunI	CAATTG	1 cut(s)	249
MvaI	CCWGG	2 cut(s)	389, 840
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	6 cut(s)	157, 244, 364, 389, 833, 860
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	628
NdeI	CATATG	2 cut(s)	700, 760
NdeII	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
NlaIII	CATG	3 cut(s)	632, 683, 730
NlaIV	GGNNCC	5 cut(s)	165, 166, 438, 582, 583
NmeAIII	GCCGAG	1 cut(s)	343
NmuCI	GTSAC	2 cut(s)	18, 754
NspV	TTCGAA	1 cut(s)	281
PdmI	GAANNNNTTC	2 cut(s)	567, 714
PfeI	GAWTC	7 cut(s)	228, 283, 421, 519, 767, 815, 876
PflMI	CCANNNNNTGG	1 cut(s)	828
PkrI	GCNGC	2 cut(s)	418, 835
PleI	GAGTC	2 cut(s)	392, 618
PpsI	GAGTC	2 cut(s)	392, 618
PpuMI	RGGWCCY	1 cut(s)	581
Psp124BI	GAGCTC	1 cut(s)	348
Psp5II	RGGWCCY	1 cut(s)	581
Psp6I	CCWGG	2 cut(s)	387, 838
PspFI	CCCAGC	1 cut(s)	160
PspGI	CCWGG	2 cut(s)	387, 838
PspN4I	GGNNCC	5 cut(s)	165, 166, 438, 582, 583
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	5 cut(s)	145, 163, 164, 481, 581
PspPPI	RGGWCCY	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	348
SatI	GCNGC	2 cut(s)	417, 834
Sau3AI	GATC	6 cut(s)	107, 436, 447, 470, 889, 893
Sau96I	GGNCC	5 cut(s)	145, 163, 164, 481, 581
SchI	GAGTC	2 cut(s)	392, 619
ScrFI	CCNGG	3 cut(s)	389, 413, 840
SduI	GDGCHC	3 cut(s)	167, 240, 348
SexAI	ACCWGGT	1 cut(s)	838
SfaNI	GCATC	2 cut(s)	476, 850
SfiI	GGCCNNNNNGGCC	1 cut(s)	364
SfuI	TTCGAA	1 cut(s)	281
SinI	GGWCC	3 cut(s)	145, 481, 581
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	249, 262, 538, 551
SsiI	CCGC	3 cut(s)	269, 331, 405
SspMI	CTAG	1 cut(s)	498
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	3 cut(s)	387, 411, 838
StyI	CCWWGG	2 cut(s)	255, 628
TaaI	ACNGT	3 cut(s)	454, 656, 737
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	281, 473, 749, 892
TaqII	GACCGA	1 cut(s)	498
TasI	AATT	4 cut(s)	249, 262, 538, 551
TfiI	GAWTC	7 cut(s)	228, 283, 421, 519, 767, 815, 876
TscAI	CASTG	4 cut(s)	61, 457, 661, 861
TseFI	GTSAC	2 cut(s)	18, 754
TseI	GCWGC	2 cut(s)	416, 833
Tsp45I	GTSAC	2 cut(s)	18, 754
TspDTI	ATGAA	4 cut(s)	72, 511, 531, 788
TspGWI	ACGGA	2 cut(s)	175, 495
TspRI	CASTG	4 cut(s)	61, 457, 661, 861
Van91I	CCANNNNNTGG	1 cut(s)	828
VpaK11BI	GGWCC	3 cut(s)	145, 481, 581
XapI	RAATTY	2 cut(s)	538, 551
XmnI	GAANNNNTTC	2 cut(s)	567, 714
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.