Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008790

Physical Location & Seq

Genomic Coordinates Forward (+)

4799469 .. 4805525

Gene Structure 6057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG069000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGGAAGCCCTCTGTCTCACTTAGATTGACACTTCTCTTCTCCTTCTCTCTCACAGCTTCCTACTCCTTCACACCCTCTTCTTCTTTCCCAACTTCTCTCAAACAGTGTTCACCATCTCCCAAAGCCACCCCTTCAGACCTTCTCTCTCTGCTGGGCCCCAAATCCCAGTCTTCATCCATTGATCCCCTCCTGGCCCAAGAACTCACTTCCTGCTTCAAGTTCCTCGTACCCTTTAGGCCCAACGCCAAGAAACTGGTCCCGGAGAAGTTTTCCGGTAGAAAATTCTTGAGGTTCGAGCAAAAGGGTCAACGAGAAGAGGAGGAGGATGGGCTTGTTTGGTGGCCCCCTCAGCCGGTTTTGGAGCTGGCCCGCCTTGCCGTTGACTCCGGCGGAGACCCGGCTGCTATTCAACGGGCTTTGGATCCGACTATGATCACTGTACCTGATGTTGAAGGATCCGAAGAGAACCGATGTCAGCTTACCAGAACTGCATATGGGAGACATTTCATAAGTCAGGAGTTGAATTCATATATTGGATTTTTATTTGAACTTATTCTTGCCCGCGGTCCCACTGTTGGGTTGAATGTGTCGTTGAATCGTTATGATTTGTTCCATGGCCACCTATTCCTTGCCTTAGACACTGGAAGACTTGGTATATTGTTTCATGCGAAAGAATACCCTGCATATGATAAAGAATTATTTCCATACAACATGGGTTTCTGTCAAAGAGGTAAAGTTCCAGATAACATTTTTTATATTAGTAGGATCTATTTTAATCTATTGTACTTTTTGTTCAAGGTTTACAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

30.54

Weight (kDa)

8.79

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27710 AT5G27710
fragaria_vesca	FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560
malus_domestica	MD04G1200800.v1.1
prunus_persica	Prupe.6G320900_v2.0.a1
pyrus_communis	pycom04g17690
rosa_chinensis	RchiOBHm_Chr3g0455711
rosa_laevigata	RLG00000025337
rosa_multiflora	Rmu_sc0002050.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423530 Rroxscaffold_6G00424030
rosa_rugosa	Rorug03G0009300 Rorug03G0009300
rosa_samantha	Rh3AG069000 Rh3BG071500 Rh3CG069800 Rh3DG072200
rosa_wichuraiana	Rw3G005570 Rw3G005920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	567
AciI	CCGC	4 cut(s)	373, 393, 565, 567
AclWI	GGATC	6 cut(s)	179, 419, 432, 453, 466, 776
AcoI	YGGCCR	1 cut(s)	619
AcsI	RAATTY	2 cut(s)	284, 526
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	3 cut(s)	231, 444, 788
AfiI	CCNNNNNNNGG	3 cut(s)	355, 578, 579
AgsI	TTSAA	8 cut(s)	220, 413, 455, 526, 551, 586, 598, 799
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	59, 367, 481
AluI	AGCT	3 cut(s)	59, 367, 481
Alw26I	GTCTC	3 cut(s)	22, 390, 496
AlwI	GGATC	6 cut(s)	179, 419, 432, 453, 466, 776
AoxI	GGCC	6 cut(s)	157, 195, 239, 344, 369, 619
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	2 cut(s)	284, 526
Asp700I	GAANNNNTTC	2 cut(s)	555, 702
AspS9I	GGNCC	8 cut(s)	157, 158, 196, 240, 259, 345, 370, 569
AsuC2I	CCSGG	2 cut(s)	263, 401
AsuHPI	GGTGA	1 cut(s)	105
AvaII	GGWCC	2 cut(s)	259, 569
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	621
BamHI	GGATCC	2 cut(s)	424, 458
BanII	GRGCYC	1 cut(s)	161
BbsI	GAAGAC	2 cut(s)	165, 655
BbvCI	CCTCAGC	1 cut(s)	351
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	2 cut(s)	124, 323
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	1 cut(s)	435
BcnI	CCSGG	2 cut(s)	263, 401
BcoDI	GTCTC	3 cut(s)	22, 390, 496
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	3 cut(s)	194, 263, 401
Bme18I	GGWCC	2 cut(s)	259, 569
BmgT120I	GGNCC	8 cut(s)	157, 158, 196, 240, 259, 345, 370, 569
BmiI	GGNNCC	7 cut(s)	159, 160, 261, 347, 426, 460, 571
BmrFI	CCNGG	3 cut(s)	194, 263, 401
BmrI	ACTGGG	1 cut(s)	163
BmuI	ACTGGG	1 cut(s)	163
BpiI	GAAGAC	2 cut(s)	165, 655
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	310
BpuMI	CCSGG	2 cut(s)	263, 401
BsaI	GGTCTC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	565, 616
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 578, 579
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	3 cut(s)	169, 261, 649
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	565, 616
BseGI	GGATG	2 cut(s)	176, 334
BseLI	CCNNNNNNNGG	3 cut(s)	355, 578, 579
BseMII	CTCAG	1 cut(s)	365
BseNI	ACTGG	3 cut(s)	169, 261, 649
BseRI	GAGGAG	2 cut(s)	335, 338
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	6 cut(s)	159, 197, 241, 346, 371, 621
BsiSI	CCGG	5 cut(s)	263, 276, 356, 390, 401
BslFI	GGGAC	2 cut(s)	245, 555
BslI	CCNNNNNNNGG	3 cut(s)	355, 578, 579
BsmAI	GTCTC	3 cut(s)	22, 390, 496
BsmFI	GGGAC	2 cut(s)	245, 555
BsnI	GGCC	6 cut(s)	159, 197, 241, 346, 371, 621
Bso31I	GGTCTC	1 cut(s)	390
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	184, 424, 435, 458, 768
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	4 cut(s)	373, 393, 565, 567
BspANI	GGCC	6 cut(s)	159, 197, 241, 346, 371, 621
BspCNI	CTCAG	1 cut(s)	364
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	7 cut(s)	159, 160, 261, 347, 426, 460, 571
BspPI	GGATC	6 cut(s)	179, 419, 432, 453, 466, 776
BspTNI	GGTCTC	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	355
BsrI	ACTGG	3 cut(s)	169, 261, 649
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	2 cut(s)	565, 616
BssMI	GATC	5 cut(s)	184, 424, 435, 458, 768
BssT1I	CCWWGG	1 cut(s)	616
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	108, 442, 577
Bst6I	CTCTTC	4 cut(s)	44, 85, 312, 459
BstC8I	GCNNGC	3 cut(s)	369, 373, 565
BstDEI	CTNAG	3 cut(s)	23, 351, 637
BstDSI	CCRYGG	2 cut(s)	565, 616
BstF5I	GGATG	2 cut(s)	176, 334
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	5 cut(s)	187, 427, 438, 461, 771
BstMAI	GTCTC	3 cut(s)	22, 390, 496
BstMBI	GATC	5 cut(s)	184, 424, 435, 458, 768
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 377
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	3 cut(s)	192, 261, 399
BstSLI	GKGCMC	1 cut(s)	161
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	165, 655
BstX2I	RGATCY	3 cut(s)	424, 458, 768
BstXI	CCANNNNNNTGG	1 cut(s)	256
BstYI	RGATCY	3 cut(s)	424, 458, 768
BsuRI	GGCC	6 cut(s)	159, 197, 241, 346, 371, 621
BtgI	CCRYGG	2 cut(s)	565, 616
BtsCI	GGATG	2 cut(s)	176, 334
BtsIMutI	CAGTG	4 cut(s)	113, 438, 573, 642
Cac8I	GCNNGC	3 cut(s)	369, 373, 565
Cfr10I	RCCGGY	1 cut(s)	355
Cfr13I	GGNCC	8 cut(s)	157, 158, 196, 240, 259, 345, 370, 569
Cfr42I	CCGCGG	1 cut(s)	568
Csp6I	GTAC	3 cut(s)	230, 443, 787
CviAII	CATG	3 cut(s)	617, 668, 715
CviQI	GTAC	3 cut(s)	230, 443, 787
DdeI	CTNAG	3 cut(s)	23, 351, 637
DpnI	GATC	5 cut(s)	186, 426, 437, 460, 770
DpnII	GATC	5 cut(s)	184, 424, 435, 458, 768
EaeI	YGGCCR	1 cut(s)	619
Eam1104I	CTCTTC	4 cut(s)	44, 85, 312, 459
EarI	CTCTTC	4 cut(s)	44, 85, 312, 459
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	390
Eco47I	GGWCC	2 cut(s)	259, 569
Eco57I	CTGAAG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	616
FaeI	CATG	3 cut(s)	620, 671, 718
FaqI	GGGAC	2 cut(s)	245, 555
FatI	CATG	3 cut(s)	616, 667, 714
FauI	CCCGC	2 cut(s)	380, 572
FauNDI	CATATG	2 cut(s)	496, 688
FbaI	TGATCA	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	2 cut(s)	163, 341
FriOI	GRGCYC	1 cut(s)	161
Fsp4HI	GCNGC	1 cut(s)	405
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	158
HaeIII	GGCC	6 cut(s)	159, 197, 241, 346, 371, 621
HapII	CCGG	5 cut(s)	263, 276, 356, 390, 401
Hin1II	CATG	3 cut(s)	620, 671, 718
HincII	GTYRAC	2 cut(s)	311, 385
HindII	GTYRAC	2 cut(s)	311, 385
HinfI	GANTC	2 cut(s)	386, 598
HpaII	CCGG	5 cut(s)	263, 276, 356, 390, 401
HphI	GGTGA	1 cut(s)	105
Hpy166II	GTNNAC	4 cut(s)	113, 311, 385, 805
Hpy188I	TCNGA	3 cut(s)	139, 429, 463
Hpy188III	TCNNGA	3 cut(s)	289, 518, 743
Hpy8I	GTNNAC	4 cut(s)	113, 311, 385, 805
HpyAV	CCTTC	5 cut(s)	55, 79, 144, 152, 449
HpyCH4III	ACNGT	3 cut(s)	108, 442, 577
HpyCH4V	TGCA	2 cut(s)	494, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 377
HpyF3I	CTNAG	3 cut(s)	23, 351, 637
Hsp92II	CATG	3 cut(s)	620, 671, 718
Ksp22I	TGATCA	1 cut(s)	435
KspI	CCGCGG	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	184, 424, 435, 458, 768
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	1 cut(s)	391
MalI	GATC	5 cut(s)	186, 426, 437, 460, 770
MboI	GATC	5 cut(s)	184, 424, 435, 458, 768
MboII	GAAGA	7 cut(s)	31, 72, 75, 165, 329, 476, 660
MflI	RGATCY	3 cut(s)	424, 458, 768
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	621
MluCI	AATT	3 cut(s)	284, 526, 698
MluNI	TGGCCA	1 cut(s)	621
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	452
Mox20I	TGGCCA	1 cut(s)	621
MroXI	GAANNNNTTC	2 cut(s)	555, 702
MscI	TGGCCA	1 cut(s)	621
MseI	TTAA	1 cut(s)	777
Msp20I	TGGCCA	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	567
MspI	CCGG	5 cut(s)	263, 276, 356, 390, 401
MspR9I	CCNGG	3 cut(s)	194, 263, 401
MvaI	CCWGG	1 cut(s)	194
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	352, 377
NciI	CCSGG	2 cut(s)	263, 401
NcoI	CCATGG	1 cut(s)	616
NdeI	CATATG	2 cut(s)	496, 688
NdeII	GATC	5 cut(s)	184, 424, 435, 458, 768
NlaIII	CATG	3 cut(s)	620, 671, 718
NlaIV	GGNNCC	7 cut(s)	159, 160, 261, 347, 426, 460, 571
PdmI	GAANNNNTTC	2 cut(s)	555, 702
PfeI	GAWTC	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	7 cut(s)	159, 160, 261, 347, 426, 460, 571
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	8 cut(s)	157, 158, 196, 240, 259, 345, 370, 569
PsrI	GAACNNNNNNTAC	2 cut(s)	779, 811
PsuI	RGATCY	3 cut(s)	424, 458, 768
RsaI	GTAC	3 cut(s)	231, 444, 788
RsaNI	GTAC	3 cut(s)	230, 443, 787
SacII	CCGCGG	1 cut(s)	568
SaqAI	TTAA	1 cut(s)	777
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	5 cut(s)	184, 424, 435, 458, 768
Sau96I	GGNCC	8 cut(s)	157, 158, 196, 240, 259, 345, 370, 569
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	3 cut(s)	194, 263, 401
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	9 cut(s)	61, 144, 296, 369, 448, 483, 627, 736, 804
Sfr303I	CCGCGG	1 cut(s)	568
SgrBI	CCGCGG	1 cut(s)	568
SinI	GGWCC	2 cut(s)	259, 569
SmlI	CTYRAG	1 cut(s)	289
SmoI	CTYRAG	1 cut(s)	289
Sse9I	AATT	3 cut(s)	284, 526, 698
SsiI	CCGC	4 cut(s)	373, 393, 565, 567
StyD4I	CCNGG	3 cut(s)	192, 261, 399
StyI	CCWWGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	108, 442, 577
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	284, 526, 698
TatI	WGTACW	1 cut(s)	786
TfiI	GAWTC	1 cut(s)	598
Tru1I	TTAA	1 cut(s)	777
Tru9I	TTAA	1 cut(s)	777
TscAI	CASTG	4 cut(s)	113, 445, 580, 649
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	4 cut(s)	165, 499, 519, 656
TspRI	CASTG	4 cut(s)	113, 445, 580, 649
VpaK11BI	GGWCC	2 cut(s)	259, 569
XapI	RAATTY	2 cut(s)	284, 526
XmnI	GAANNNNTTC	2 cut(s)	555, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.