Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008790

Physical Location & Seq

Genomic Coordinates Reverse (-)

28383684 .. 28386469

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGGGAAGCCCTCTTTCTCACTCGGATTGACAATCTTCGTCTCCCTCTCTCTCACAGCCTCCTCCTACTCCATCTCATCCTCTTCTTCATGTTCCCCAATCTTTCTCAAACCATCTTCACTATCAACATCTCCCAAAGCCACCCCTTCAGACCTGCTCTCTTTGCTGGGCTCCAAATCCCAGTCTTCAACCATTAACCCCCTTGTAGCCCAAGAGCTCACTTCTTGCTTCAAATTCCTCGTACCCTTTACGCCAAATGTCAACAAATTGTGCCCACAAAAGTACCCCAATAGAAAAGTCTTAAACTTGAAGCAAAAGGGTGATTTATGTCAACGGGAGGAGGAGGATGAGCTTGTTTGGTGGCCTCCTCAGCCGGTTTTGGAGCTTGCTCGCCTTGCTGTTGACTCTGGTGGAGACCCAGCTGCTATTCAACGTGCTTTGGATCCCACGATGATCACTGTACCTGATGTTGAAGGATCAAAAGCGAACCGATGTGAGCTTACTAGAACTCCATATGGGAGACGCTTCATAAGTGAGGAGTTGAATTCATATCTTGAATTTTTATTTGAACTTATTCTAGCTCGGGGTCCCGCTTTTGGGTTGAATGTGTCGTTGAGTCGCTATGATTTATTCCATGGCCACCTTTTTCTTGCCATAGACACTGGAAGACTTGGTATATTATTCCATGCCAAAGAATACCCTGCATATGATAAAGAAGTATTTCCATACAATATGGGCTACTGTCAAGTAGGGTCTAATGTGAGATATGATGATTCAATGAACTTGCGAAATATCCTCTGGCTGGCTCCATTGCCAAGCAATTCAACTAAAGCTTGGGTAGCACCAGGTGTCCTTGTAGCGCTGGATGCCCATCCAGAAGGCATCATATATAGAGATCTCATACCTGAATATGTAAATTTTGCTAGGACAATATATGAAGGTTTGAACTTCCATTATCATTTTCACTCCCACATGGGTGATATGCCATTTTCCGTTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

37.11

Weight (kDa)

6.25

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008790)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27710 AT5G27710
fragaria_vesca	FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560 FvH4_6g06560
malus_domestica	MD04G1200800.v1.1
prunus_persica	Prupe.6G320900_v2.0.a1
pyrus_communis	pycom04g17690
rosa_chinensis	RchiOBHm_Chr3g0455711
rosa_laevigata	RLG00000025337
rosa_multiflora	Rmu_sc0002050.1_g000002
rosa_roxburghii	Rroxscaffold_6G00423530 Rroxscaffold_6G00424030
rosa_rugosa	Rorug03G0009300 Rorug03G0009300
rosa_samantha	Rh3AG069000 Rh3BG071500 Rh3CG069800 Rh3DG072200
rosa_wichuraiana	Rw3G005570 Rw3G005920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	162
AciI	CCGC	1 cut(s)	591
AclWI	GGATC	3 cut(s)	437, 450, 484
AcoI	YGGCCR	1 cut(s)	637
AcsI	RAATTY	4 cut(s)	233, 544, 557, 916
AcuI	CTGAAG	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	848
AfaI	GTAC	3 cut(s)	243, 284, 462
AfeI	AGCGCT	1 cut(s)	861
AfiI	CCNNNNNNNGG	3 cut(s)	596, 597, 802
AjnI	CCWGG	1 cut(s)	844
AleI	CACNNNNGTG	1 cut(s)	975
AluBI	AGCT	7 cut(s)	217, 352, 385, 422, 499, 581, 833
AluI	AGCT	7 cut(s)	217, 352, 385, 422, 499, 581, 833
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	46, 408, 514
AlwI	GGATC	3 cut(s)	437, 450, 484
Ama87I	CYCGRG	1 cut(s)	582
Aor51HI	AGCGCT	1 cut(s)	861
AoxI	GGCC	2 cut(s)	362, 637
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	4 cut(s)	233, 544, 557, 916
Asp700I	GAANNNNTTC	2 cut(s)	573, 720
AspLEI	GCGC	1 cut(s)	862
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	2 cut(s)	332, 989
AvaI	CYCGRG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BalI	TGGCCA	1 cut(s)	639
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	173, 219
BbsI	GAAGAC	2 cut(s)	177, 673
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	80, 121, 879
BciT130I	CCWGG	1 cut(s)	846
BclI	TGATCA	1 cut(s)	453
BcoDI	GTCTC	3 cut(s)	46, 408, 514
BfaI	CTAG	3 cut(s)	504, 578, 924
BfoI	RGCGCY	1 cut(s)	863
BfuAI	ACCTGC	1 cut(s)	162
BglII	AGATCT	1 cut(s)	895
BisI	GCNGC	1 cut(s)	423
BlsI	GCNGC	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	846
Bme18I	GGWCC	1 cut(s)	587
BmeT110I	CYCGRG	1 cut(s)	582
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	5 cut(s)	172, 444, 588, 589, 807
BmrFI	CCNGG	1 cut(s)	846
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	856, 891
BmuI	ACTGGG	1 cut(s)	175
BpiI	GAAGAC	2 cut(s)	177, 673
Bpu10I	CCTNAGC	1 cut(s)	369
BsaBI	GATNNNNATC	1 cut(s)	870
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bsc4I	CCNNNNNNNGG	3 cut(s)	596, 597, 802
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	181, 667
Bse3DI	GCAATG	1 cut(s)	809
Bse8I	GATNNNNATC	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	846
BseDI	CCNNGG	1 cut(s)	634
BseGI	GGATG	4 cut(s)	77, 352, 871, 871
BseJI	GATNNNNATC	1 cut(s)	870
BseLI	CCNNNNNNNGG	3 cut(s)	596, 597, 802
BseMI	GCAATG	1 cut(s)	809
BseMII	CTCAG	1 cut(s)	383
BseNI	ACTGG	2 cut(s)	181, 667
BseRI	GAGGAG	5 cut(s)	52, 353, 356, 357, 551
BseSI	GKGCMC	1 cut(s)	275
BseXI	GCAGC	1 cut(s)	409
BseYI	CCCAGC	2 cut(s)	166, 418
BshFI	GGCC	2 cut(s)	364, 639
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	3 cut(s)	596, 597, 802
BsmAI	GTCTC	3 cut(s)	46, 408, 514
BsmBI	CGTCTC	2 cut(s)	46, 514
BsmFI	GGGAC	1 cut(s)	573
BsnI	GGCC	2 cut(s)	364, 639
Bso31I	GGTCTC	1 cut(s)	408
BsoBI	CYCGRG	1 cut(s)	582
Bsp1286I	GDGCHC	3 cut(s)	173, 219, 275
Bsp143I	GATC	4 cut(s)	442, 453, 476, 895
Bsp19I	CCATGG	1 cut(s)	634
BspACI	CCGC	1 cut(s)	591
BspANI	GGCC	2 cut(s)	364, 639
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	5 cut(s)	172, 444, 588, 589, 807
BspMI	ACCTGC	1 cut(s)	162
BspPI	GGATC	3 cut(s)	437, 450, 484
BspTNI	GGTCTC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	809
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	181, 667
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	1 cut(s)	634
BssMI	GATC	4 cut(s)	442, 453, 476, 895
BssT1I	CCWWGG	1 cut(s)	634
Bst2UI	CCWGG	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	460, 743
Bst6I	CTCTTC	1 cut(s)	88
BstC8I	GCNNGC	3 cut(s)	387, 391, 804
BstDEI	CTNAG	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	634
BstF5I	GGATG	4 cut(s)	77, 352, 871, 871
BstH2I	RGCGCY	1 cut(s)	863
BstHHI	GCGC	1 cut(s)	862
BstKTI	GATC	4 cut(s)	445, 456, 479, 898
BstMAI	GTCTC	3 cut(s)	46, 408, 514
BstMBI	GATC	4 cut(s)	442, 453, 476, 895
BstMWI	GCNNNNNNNGC	5 cut(s)	163, 370, 395, 839, 866
BstNI	CCWGG	1 cut(s)	846
BstSCI	CCNGG	1 cut(s)	844
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	2 cut(s)	177, 673
BstX2I	RGATCY	2 cut(s)	442, 895
BstYI	RGATCY	2 cut(s)	442, 895
BsuRI	GGCC	2 cut(s)	364, 639
BtgI	CCRYGG	1 cut(s)	634
BtsCI	GGATG	4 cut(s)	77, 352, 871, 871
BtsIMutI	CAGTG	2 cut(s)	456, 660
BveI	ACCTGC	1 cut(s)	162
Cac8I	GCNNGC	3 cut(s)	387, 391, 804
CfoI	GCGC	1 cut(s)	862
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	1 cut(s)	587
CseI	GACGC	1 cut(s)	531
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	3 cut(s)	242, 283, 461
CviAII	CATG	4 cut(s)	90, 635, 686, 973
CviQI	GTAC	3 cut(s)	242, 283, 461
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	4 cut(s)	444, 455, 478, 897
DpnII	GATC	4 cut(s)	442, 453, 476, 895
DraIII	CACNNNGTG	1 cut(s)	848
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	634
Eco24I	GRGCYC	2 cut(s)	173, 219
Eco31I	GGTCTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	587
Eco47III	AGCGCT	1 cut(s)	861
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	844
EcoT14I	CCWWGG	1 cut(s)	634
EcoT38I	GRGCYC	2 cut(s)	173, 219
ErhI	CCWWGG	1 cut(s)	634
Esp3I	CGTCTC	2 cut(s)	46, 514
FaeI	CATG	4 cut(s)	93, 638, 689, 976
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	89, 634, 685, 972
FauI	CCCGC	1 cut(s)	598
FauNDI	CATATG	2 cut(s)	514, 706
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	423
FokI	GGATG	4 cut(s)	64, 359, 858, 878
FriOI	GRGCYC	2 cut(s)	173, 219
Fsp4HI	GCNGC	1 cut(s)	423
FspBI	CTAG	3 cut(s)	504, 578, 924
GlaI	GCGC	1 cut(s)	861
GluI	GCNGC	1 cut(s)	423
GsaI	CCCAGC	2 cut(s)	170, 422
HaeII	RGCGCY	1 cut(s)	863
HaeIII	GGCC	2 cut(s)	364, 639
HapII	CCGG	1 cut(s)	374
HgaI	GACGC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	862
Hin1II	CATG	4 cut(s)	93, 638, 689, 976
Hin6I	GCGC	1 cut(s)	860
HinP1I	GCGC	1 cut(s)	860
HincII	GTYRAC	3 cut(s)	262, 332, 403
HindII	GTYRAC	3 cut(s)	262, 332, 403
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	3 cut(s)	404, 616, 773
HpaII	CCGG	1 cut(s)	374
HphI	GGTGA	2 cut(s)	332, 989
Hpy166II	GTNNAC	3 cut(s)	262, 332, 403
Hpy188I	TCNGA	2 cut(s)	26, 151
Hpy188III	TCNNGA	2 cut(s)	554, 875
Hpy8I	GTNNAC	3 cut(s)	262, 332, 403
HpyAV	CCTTC	4 cut(s)	156, 467, 872, 932
HpyCH4III	ACNGT	2 cut(s)	460, 743
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	5 cut(s)	163, 370, 395, 839, 866
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	4 cut(s)	93, 638, 689, 976
HspAI	GCGC	1 cut(s)	860
KflI	GGGWCCC	1 cut(s)	587
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	4 cut(s)	442, 453, 476, 895
LmnI	GCTCC	3 cut(s)	176, 382, 811
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	2 cut(s)	856, 891
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	3 cut(s)	504, 578, 924
MaeII	ACGT	1 cut(s)	433
MalI	GATC	4 cut(s)	444, 455, 478, 897
MboI	GATC	4 cut(s)	442, 453, 476, 895
MboII	GAAGA	6 cut(s)	28, 75, 78, 108, 177, 678
MflI	RGATCY	2 cut(s)	442, 895
MhlI	GDGCHC	3 cut(s)	173, 219, 275
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	6 cut(s)	233, 266, 544, 557, 820, 916
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	2 cut(s)	398, 625
Mox20I	TGGCCA	1 cut(s)	639
MroXI	GAANNNNTTC	2 cut(s)	573, 720
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	2 cut(s)	195, 302
MslI	CAYNNNNRTG	1 cut(s)	975
Msp20I	TGGCCA	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	846
MwoI	GCNNNNNNNGC	5 cut(s)	163, 370, 395, 839, 866
NcoI	CCATGG	1 cut(s)	634
NdeI	CATATG	2 cut(s)	514, 706
NdeII	GATC	4 cut(s)	442, 453, 476, 895
NlaIII	CATG	4 cut(s)	93, 638, 689, 976
NlaIV	GGNNCC	5 cut(s)	172, 444, 588, 589, 807
OliI	CACNNNNGTG	1 cut(s)	975
PdmI	GAANNNNTTC	2 cut(s)	573, 720
PfeI	GAWTC	1 cut(s)	773
PkrI	GCNGC	1 cut(s)	424
PleI	GAGTC	2 cut(s)	398, 624
PpsI	GAGTC	2 cut(s)	398, 624
PpuMI	RGGWCCY	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	844
PspFI	CCCAGC	2 cut(s)	166, 418
PspGI	CCWGG	1 cut(s)	844
PspN4I	GGNNCC	5 cut(s)	172, 444, 588, 589, 807
PspPI	GGNCC	1 cut(s)	587
PspPPI	RGGWCCY	1 cut(s)	587
PsuI	RGATCY	2 cut(s)	442, 895
PvuII	CAGCTG	1 cut(s)	422
RsaI	GTAC	3 cut(s)	243, 284, 462
RsaNI	GTAC	3 cut(s)	242, 283, 461
RseI	CAYNNNNRTG	1 cut(s)	975
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	195, 302
SatI	GCNGC	1 cut(s)	423
Sau3AI	GATC	4 cut(s)	442, 453, 476, 895
Sau96I	GGNCC	1 cut(s)	587
SchI	GAGTC	2 cut(s)	398, 625
ScrFI	CCNGG	1 cut(s)	846
SduI	GDGCHC	3 cut(s)	173, 219, 275
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	2 cut(s)	856, 891
SinI	GGWCC	1 cut(s)	587
SmiMI	CAYNNNNRTG	1 cut(s)	975
Sse9I	AATT	6 cut(s)	233, 266, 544, 557, 820, 916
SsiI	CCGC	1 cut(s)	591
SspMI	CTAG	3 cut(s)	504, 578, 924
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	844
StyI	CCWWGG	1 cut(s)	634
TaaI	ACNGT	2 cut(s)	460, 743
TaiI	ACGT	1 cut(s)	436
TasI	AATT	6 cut(s)	233, 266, 544, 557, 820, 916
TfiI	GAWTC	1 cut(s)	773
Tru1I	TTAA	2 cut(s)	195, 302
Tru9I	TTAA	2 cut(s)	195, 302
TscAI	CASTG	2 cut(s)	463, 667
TseI	GCWGC	1 cut(s)	422
TspDTI	ATGAA	5 cut(s)	78, 517, 537, 794, 951
TspGWI	ACGGA	1 cut(s)	982
TspRI	CASTG	2 cut(s)	463, 667
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	4 cut(s)	233, 544, 557, 916
XmnI	GAANNNNTTC	2 cut(s)	573, 720
XspI	CTAG	3 cut(s)	504, 578, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.