Rw3G005570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0008790
Physical Location & Seq
Forward (+)
4669826 .. 4672546
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G005570.1

Sequence Viewer

Length: 996 bp
ATGGGGAAGCCCTCTCTCTCACTTGGATTGACACTTCTCTTCTCCTTCTCTCTCACAGCTTCCTTCTCCTTCACACCCTCTTCTTCTTTCCCAACTTCTGTCAAACAATCTTCACCATCTCCCAAAGCCACCCCTTCAGACCTTCTCTCTCTGCTGGGCCCCAAGTCCCAGTCCTCATCCGTTGAGCCCCTCCTGGCCCAAGAACTCACTTCCTGCTTCAAGTTCCTCGTACCCTTTAGGCCCAATGCCAAGAAACTGGTCCCGGAGAAGTTTTCCGGTAGAAAGTTCTTGAGGTTTGGTCAACGAGAAGAGGAGGAGGATGTGCTTGTTTGGTGGCCCCCTCAGCCGGTTTTGGAGCTGGCCCGCCTTGCCGTTGACTCCGGCGGAGACCCGGCTGCTATTCAACGGGCTTTGGATCCGACTCTGATCACTGTACCTGATGTTGAAGGATCTGAAGAGAACCGATGTCAGCTTACCAGAACTCCATATGGGAGACATTTCATAAGTGAGGAGTTGAATTCATATATTGGATTTTTATTTGAACTTATTCTTGCCCGCGGTCCCACTGTTGGGTTGAATGTGTCGTTGAATCGCTATGATTTGTTCCATGGCCACCTATTTCTTGCCTTAGACACTGGAAGACTTGGTATATTGTTTCATGCGAAAGAATACCCTGCATATGATAAAGAATTATTTCCATACAACATGGGTTTCTGTCAAAGAGGGTCTAATGTGACGTATGATGACTCAATGAACCTGCGAAATATCCTCTGGCTAGCTCCATTGCCAAGCCATTCAGCCAAAGGTTGGGAAGCACCAGGTGTCCTGGTGGTGCTCGATGCCCGTCCAGATGGAATCATATATAGAGATCTCATACCCGAATATGTAAATTTTGCAAGGACTATATATGAAGACGATCTTGGGGAGGTTGCAGTTGATGTCAACTATTTGGCTGTGGGAAATCCAGAGTCGAGGTTTCAACTTTTTATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.89

Weight (kDa)

5.26

Isoelectric Point (pI)

46.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 765
AccB7I CCANNNNNTGG 1 cut(s) 807
AccII CGCG 1 cut(s) 558
AciI CCGC 4 cut(s) 364, 384, 556, 558
AclWI GGATC 3 cut(s) 410, 423, 457
AcoI YGGCCR 1 cut(s) 610
AcsI RAATTY 2 cut(s) 517, 889
AcuI CTGAAG 2 cut(s) 120, 474
AdeI CACNNNGTG 1 cut(s) 821
AfaI GTAC 2 cut(s) 231, 435
AfiI CCNNNNNNNGG 4 cut(s) 346, 569, 570, 807
AgsI TTSAA 8 cut(s) 220, 404, 446, 517, 542, 577, 589, 980
AjnI CCWGG 3 cut(s) 192, 817, 825
AjuI GAANNNNNNNTTGG 2 cut(s) 903, 935
AluBI AGCT 4 cut(s) 59, 358, 472, 779
AluI AGCT 4 cut(s) 59, 358, 472, 779
Alw21I GWGCWC 1 cut(s) 837
Alw26I GTCTC 2 cut(s) 381, 487
AlwI GGATC 3 cut(s) 410, 423, 457
AoxI GGCC 6 cut(s) 157, 195, 239, 335, 360, 610
ApaI GGGCCC 1 cut(s) 161
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 2 cut(s) 517, 889
Asp700I GAANNNNTTC 2 cut(s) 546, 693
AspS9I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 336, 361, 560
AsuC2I CCSGG 2 cut(s) 263, 392
AsuHPI GGTGA 1 cut(s) 105
AsuNHI GCTAGC 1 cut(s) 775
AvaII GGWCC 2 cut(s) 259, 560
BaeGI GKGCMC 1 cut(s) 161
BalI TGGCCA 1 cut(s) 612
BamHI GGATCC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 161, 189
BbsI GAAGAC 2 cut(s) 646, 918
Bbv12I GWGCWC 1 cut(s) 837
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 124, 845
BceAI ACGGC 1 cut(s) 356
BciT130I CCWGG 3 cut(s) 194, 819, 827
BclI TGATCA 1 cut(s) 426
BcnI CCSGG 2 cut(s) 263, 392
BcoDI GTCTC 2 cut(s) 381, 487
BfaI CTAG 1 cut(s) 776
BfuAI ACCTGC 1 cut(s) 765
BglII AGATCT 1 cut(s) 868
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme1390I CCNGG 5 cut(s) 194, 263, 392, 819, 827
Bme18I GGWCC 2 cut(s) 259, 560
BmgT120I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 336, 361, 560
BmiI GGNNCC 6 cut(s) 159, 160, 261, 338, 417, 562
BmrFI CCNGG 5 cut(s) 194, 263, 392, 819, 827
BmrI ACTGGG 1 cut(s) 163
BmsI GCATC 1 cut(s) 829
BmtI GCTAGC 1 cut(s) 779
BmuI ACTGGG 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 646, 918
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 310
BpuMI CCSGG 2 cut(s) 263, 392
BsaI GGTCTC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 556, 607
BsaWI WCCGGW 1 cut(s) 275
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 4 cut(s) 346, 569, 570, 807
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 3 cut(s) 169, 261, 640
Bse3DI GCAATG 1 cut(s) 782
BseBI CCWGG 3 cut(s) 194, 819, 827
BseDI CCNNGG 2 cut(s) 556, 607
BseGI GGATG 2 cut(s) 176, 325
BseLI CCNNNNNNNGG 4 cut(s) 346, 569, 570, 807
BseMI GCAATG 1 cut(s) 782
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 3 cut(s) 169, 261, 640
BseRI GAGGAG 3 cut(s) 326, 329, 524
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 6 cut(s) 159, 197, 241, 337, 362, 612
BsiHKAI GWGCWC 1 cut(s) 837
BsiSI CCGG 5 cut(s) 263, 276, 347, 381, 392
BslFI GGGAC 3 cut(s) 151, 245, 546
BslI CCNNNNNNNGG 4 cut(s) 346, 569, 570, 807
BsmAI GTCTC 2 cut(s) 381, 487
BsmFI GGGAC 3 cut(s) 151, 245, 546
BsnI GGCC 6 cut(s) 159, 197, 241, 337, 362, 612
Bso31I GGTCTC 1 cut(s) 381
Bsp120I GGGCCC 1 cut(s) 157
Bsp1286I GDGCHC 3 cut(s) 161, 189, 837
Bsp143I GATC 5 cut(s) 415, 426, 449, 868, 916
Bsp19I CCATGG 1 cut(s) 607
BspACI CCGC 4 cut(s) 364, 384, 556, 558
BspANI GGCC 6 cut(s) 159, 197, 241, 337, 362, 612
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 6 cut(s) 159, 160, 261, 338, 417, 562
BspMI ACCTGC 1 cut(s) 765
BspOI GCTAGC 1 cut(s) 779
BspPI GGATC 3 cut(s) 410, 423, 457
BspTNI GGTCTC 1 cut(s) 381
BsrDI GCAATG 1 cut(s) 782
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 3 cut(s) 169, 261, 640
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 556, 607
BssMI GATC 5 cut(s) 415, 426, 449, 868, 916
BssT1I CCWWGG 1 cut(s) 607
Bst2UI CCWGG 3 cut(s) 194, 819, 827
Bst4CI ACNGT 2 cut(s) 433, 568
Bst6I CTCTTC 4 cut(s) 44, 85, 303, 450
BstC8I GCNNGC 4 cut(s) 360, 364, 556, 777
BstDEI CTNAG 2 cut(s) 342, 628
BstDSI CCRYGG 2 cut(s) 556, 607
BstF5I GGATG 2 cut(s) 176, 325
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 5 cut(s) 418, 429, 452, 871, 919
BstMAI GTCTC 2 cut(s) 381, 487
BstMBI GATC 5 cut(s) 415, 426, 449, 868, 916
BstMWI GCNNNNNNNGC 2 cut(s) 343, 368
BstNI CCWGG 3 cut(s) 194, 819, 827
BstSCI CCNGG 5 cut(s) 192, 261, 390, 817, 825
BstSLI GKGCMC 1 cut(s) 161
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 382
BstV2I GAAGAC 2 cut(s) 646, 918
BstX2I RGATCY 3 cut(s) 415, 449, 868
BstXI CCANNNNNNTGG 1 cut(s) 256
BstYI RGATCY 3 cut(s) 415, 449, 868
BsuRI GGCC 6 cut(s) 159, 197, 241, 337, 362, 612
BtgI CCRYGG 2 cut(s) 556, 607
BtsCI GGATG 2 cut(s) 176, 325
BtsIMutI CAGTG 3 cut(s) 429, 564, 633
BveI ACCTGC 1 cut(s) 765
Cac8I GCNNGC 4 cut(s) 360, 364, 556, 777
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 336, 361, 560
Cfr42I CCGCGG 1 cut(s) 559
CsiI ACCWGGT 1 cut(s) 817
Csp6I GTAC 2 cut(s) 230, 434
CviAII CATG 3 cut(s) 608, 659, 706
CviQI GTAC 2 cut(s) 230, 434
DdeI CTNAG 2 cut(s) 342, 628
DpnI GATC 5 cut(s) 417, 428, 451, 870, 918
DpnII GATC 5 cut(s) 415, 426, 449, 868, 916
DraIII CACNNNGTG 1 cut(s) 821
EaeI YGGCCR 1 cut(s) 610
Eam1104I CTCTTC 4 cut(s) 44, 85, 303, 450
EarI CTCTTC 4 cut(s) 44, 85, 303, 450
EciI GGCGGA 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 607
Eco24I GRGCYC 2 cut(s) 161, 189
Eco31I GGTCTC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 259, 560
Eco57I CTGAAG 2 cut(s) 120, 474
EcoO109I RGGNCCY 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 3 cut(s) 192, 817, 825
EcoT14I CCWWGG 1 cut(s) 607
EcoT38I GRGCYC 2 cut(s) 161, 189
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 3 cut(s) 611, 662, 709
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 3 cut(s) 151, 245, 546
FatI CATG 3 cut(s) 607, 658, 705
FauI CCCGC 2 cut(s) 371, 563
FauNDI CATATG 2 cut(s) 487, 679
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 2 cut(s) 163, 332
FriOI GRGCYC 2 cut(s) 161, 189
Fsp4HI GCNGC 1 cut(s) 396
FspBI CTAG 1 cut(s) 776
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 158
HaeIII GGCC 6 cut(s) 159, 197, 241, 337, 362, 612
HapII CCGG 5 cut(s) 263, 276, 347, 381, 392
Hin1II CATG 3 cut(s) 611, 662, 709
HincII GTYRAC 3 cut(s) 302, 376, 943
HindII GTYRAC 3 cut(s) 302, 376, 943
HinfI GANTC 6 cut(s) 377, 421, 589, 746, 855, 968
HpaII CCGG 5 cut(s) 263, 276, 347, 381, 392
HphI GGTGA 1 cut(s) 105
Hpy166II GTNNAC 3 cut(s) 302, 376, 943
Hpy188I TCNGA 4 cut(s) 139, 420, 426, 454
Hpy188III TCNNGA 3 cut(s) 289, 848, 965
Hpy8I GTNNAC 3 cut(s) 302, 376, 943
HpyAV CCTTC 6 cut(s) 55, 73, 79, 144, 152, 440
HpyCH4III ACNGT 2 cut(s) 433, 568
HpyCH4IV ACGT 1 cut(s) 737
HpyCH4V TGCA 3 cut(s) 677, 896, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 343, 368
HpyF3I CTNAG 2 cut(s) 342, 628
HpySE526I ACGT 1 cut(s) 737
Hsp92II CATG 3 cut(s) 611, 662, 709
Ksp22I TGATCA 1 cut(s) 426
KspI CCGCGG 1 cut(s) 559
Kzo9I GATC 5 cut(s) 415, 426, 449, 868, 916
LmnI GCTCC 2 cut(s) 355, 784
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 829
MabI ACCWGGT 1 cut(s) 817
MaeI CTAG 1 cut(s) 776
MaeII ACGT 1 cut(s) 737
MaeIII GTNAC 1 cut(s) 733
MalI GATC 5 cut(s) 417, 428, 451, 870, 918
MboI GATC 5 cut(s) 415, 426, 449, 868, 916
MboII GAAGA 8 cut(s) 31, 72, 75, 102, 320, 467, 651, 923
MflI RGATCY 3 cut(s) 415, 449, 868
MhlI GDGCHC 3 cut(s) 161, 189, 837
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 3 cut(s) 517, 689, 889
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 4 cut(s) 371, 415, 740, 977
MmeI TCCRAC 1 cut(s) 443
Mox20I TGGCCA 1 cut(s) 612
MroXI GAANNNNTTC 2 cut(s) 546, 693
MscI TGGCCA 1 cut(s) 612
Msp20I TGGCCA 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 558
MspI CCGG 5 cut(s) 263, 276, 347, 381, 392
MspR9I CCNGG 5 cut(s) 194, 263, 392, 819, 827
MvaI CCWGG 3 cut(s) 194, 819, 827
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 343, 368
NciI CCSGG 2 cut(s) 263, 392
NcoI CCATGG 1 cut(s) 607
NdeI CATATG 2 cut(s) 487, 679
NdeII GATC 5 cut(s) 415, 426, 449, 868, 916
NheI GCTAGC 1 cut(s) 775
NlaIII CATG 3 cut(s) 611, 662, 709
NlaIV GGNNCC 6 cut(s) 159, 160, 261, 338, 417, 562
NmuCI GTSAC 1 cut(s) 733
PdmI GAANNNNTTC 2 cut(s) 546, 693
PfeI GAWTC 2 cut(s) 589, 855
PflMI CCANNNNNTGG 1 cut(s) 807
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 1 cut(s) 397
PleI GAGTC 4 cut(s) 371, 415, 740, 976
PpsI GAGTC 4 cut(s) 371, 415, 740, 976
Psp6I CCWGG 3 cut(s) 192, 817, 825
PspFI CCCAGC 1 cut(s) 154
PspGI CCWGG 3 cut(s) 192, 817, 825
PspN4I GGNNCC 6 cut(s) 159, 160, 261, 338, 417, 562
PspOMI GGGCCC 1 cut(s) 157
PspPI GGNCC 8 cut(s) 157, 158, 196, 240, 259, 336, 361, 560
PsuI RGATCY 3 cut(s) 415, 449, 868
RsaI GTAC 2 cut(s) 231, 435
RsaNI GTAC 2 cut(s) 230, 434
SacII CCGCGG 1 cut(s) 559
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 5 cut(s) 415, 426, 449, 868, 916
Sau96I GGNCC 8 cut(s) 157, 158, 196, 240, 259, 336, 361, 560
SchI GAGTC 4 cut(s) 371, 415, 740, 977
ScrFI CCNGG 5 cut(s) 194, 263, 392, 819, 827
SduI GDGCHC 3 cut(s) 161, 189, 837
SexAI ACCWGGT 1 cut(s) 817
SfaNI GCATC 1 cut(s) 829
Sfr303I CCGCGG 1 cut(s) 559
SgrBI CCGCGG 1 cut(s) 559
SinI GGWCC 2 cut(s) 259, 560
SmlI CTYRAG 1 cut(s) 289
SmoI CTYRAG 1 cut(s) 289
Sse9I AATT 3 cut(s) 517, 689, 889
SsiI CCGC 4 cut(s) 364, 384, 556, 558
SspMI CTAG 1 cut(s) 776
StyD4I CCNGG 5 cut(s) 192, 261, 390, 817, 825
StyI CCWWGG 1 cut(s) 607
TaaI ACNGT 2 cut(s) 433, 568
TaiI ACGT 1 cut(s) 740
TaqI TCGA 2 cut(s) 837, 971
TasI AATT 3 cut(s) 517, 689, 889
TfiI GAWTC 2 cut(s) 589, 855
TscAI CASTG 3 cut(s) 436, 571, 640
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 1 cut(s) 395
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 5 cut(s) 490, 510, 647, 767, 924
TspGWI ACGGA 1 cut(s) 169
TspRI CASTG 3 cut(s) 436, 571, 640
Van91I CCANNNNNTGG 1 cut(s) 807
VpaK11BI GGWCC 2 cut(s) 259, 560
XapI RAATTY 2 cut(s) 517, 889
XmnI GAANNNNTTC 2 cut(s) 546, 693
XspI CTAG 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.