FvH4_6g08790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012023
Physical Location & Seq
Reverse (-)
5226266 .. 5227311
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08790.t1

Sequence Viewer

Length: 462 bp
ATGGCCGGTCTGTGGGATCCCCATCCGAACCCTACTCTCAGCAGAACCACCTCAACAAGTAGTACTAGTAGCTTTGGCTTTGGTGGGTACTTAATGGATCATCAGAGCAATACTCAGAGCTGTTATAACTACGTGATGATGGAGAAGATGGAGAAGAGGCAGCTTTTTCTTAGAAGCTACCAGTTCTGCAGGAAGAAGAGTCTGGCAGAGAAGATCAAAGGGTCTTTGGTTAAAGTGAAGAAGGTCATATGCTTGAGGCTGCGTAATGCTAAGAAGCTTAGGAAATCTGTGTGCTTTAGACTCCGGTATGGATTCTCTTTCCGGCGAAGAAGACTATGCCGGCTCTTGAATTACTACCGCCATAACAAGAAATGCGATAACTCCTATTGCTTCTGCTGGTGTCCATTGCAACGAGCCAAATGGGAAGGAATGAAATCTGTGCAAAACATGTTCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

18.29

Weight (kDa)

10.26

Isoelectric Point (pI)

54.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AciI CCGC 1 cut(s) 358
AclWI GGATC 3 cut(s) 11, 24, 105
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 2 cut(s) 64, 89
AfiI CCNNNNNNNGG 1 cut(s) 12
AflIII ACRYGT 1 cut(s) 447
AgsI TTSAA 2 cut(s) 349, 454
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 5 cut(s) 72, 120, 163, 177, 277
AluI AGCT 5 cut(s) 72, 120, 163, 177, 277
AlwI GGATC 3 cut(s) 11, 24, 105
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 160, 259
BamHI GGATCC 1 cut(s) 16
BbsI GAAGAC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 172, 246
BccI CCATC 3 cut(s) 30, 133, 142
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 187
BisI GCNGC 2 cut(s) 161, 260
BlsI GCNGC 2 cut(s) 162, 261
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 337
BplI GAGNNNNNCTC 2 cut(s) 97, 129
Bpu10I CCTNAGC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 274
BsaAI YACGTR 1 cut(s) 133
BsaBI GATNNNNATC 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 2 cut(s) 5, 339
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 404
Bse8I GATNNNNATC 1 cut(s) 21
BseGI GGATG 1 cut(s) 22
BseJI GATNNNNATC 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 2 cut(s) 52, 128
BseNI ACTGG 1 cut(s) 181
BseXI GCAGC 2 cut(s) 172, 246
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 4 cut(s) 6, 304, 322, 340
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 16, 97, 213
BspACI CCGC 1 cut(s) 358
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 51, 127
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 191
BspPI GGATC 3 cut(s) 11, 24, 105
BsrDI GCAATG 1 cut(s) 404
BsrFI RCCGGY 2 cut(s) 5, 339
BsrI ACTGG 1 cut(s) 181
BssAI RCCGGY 2 cut(s) 5, 339
BssMI GATC 3 cut(s) 16, 97, 213
Bst6I CTCTTC 2 cut(s) 149, 191
BstBAI YACGTR 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 5 cut(s) 38, 114, 170, 270, 278
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 3 cut(s) 19, 100, 216
BstMBI GATC 3 cut(s) 16, 97, 213
BstNSI RCATGY 1 cut(s) 451
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 172, 246
BstV2I GAAGAC 1 cut(s) 337
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 2 cut(s) 5, 339
Csp6I GTAC 2 cut(s) 63, 88
CviAII CATG 1 cut(s) 448
CviQI GTAC 2 cut(s) 63, 88
DdeI CTNAG 5 cut(s) 38, 114, 170, 270, 278
DpnI GATC 3 cut(s) 18, 99, 215
DpnII GATC 3 cut(s) 16, 97, 213
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 149, 191
EarI CTCTTC 2 cut(s) 149, 191
FaeI CATG 1 cut(s) 451
FaiI YATR 7 cut(s) 126, 248, 250, 309, 337, 363, 449
FatI CATG 1 cut(s) 447
FauNDI CATATG 1 cut(s) 248
Fnu4HI GCNGC 2 cut(s) 161, 260
FokI GGATG 1 cut(s) 9
Fsp4HI GCNGC 2 cut(s) 161, 260
FspBI CTAG 1 cut(s) 66
GluI GCNGC 2 cut(s) 161, 260
HaeIII GGCC 1 cut(s) 5
HapII CCGG 4 cut(s) 6, 304, 322, 340
Hin1II CATG 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 3 cut(s) 199, 300, 312
HpaII CCGG 4 cut(s) 6, 304, 322, 340
Hpy188I TCNGA 3 cut(s) 27, 105, 117
Hpy188III TCNNGA 1 cut(s) 346
HpyAV CCTTC 2 cut(s) 235, 419
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 3 cut(s) 189, 409, 442
HpyF3I CTNAG 5 cut(s) 38, 114, 170, 270, 278
HpySE526I ACGT 1 cut(s) 132
Hsp92II CATG 1 cut(s) 451
KroI GCCGGC 1 cut(s) 339
KroNI GCCGGC 1 cut(s) 341
Kzo9I GATC 3 cut(s) 16, 97, 213
LpnPI CCDG 8 cut(s) 19, 175, 188, 194, 317, 335, 353, 382
Lsp1109I GCAGC 2 cut(s) 172, 246
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 132
MalI GATC 3 cut(s) 18, 99, 215
MboI GATC 3 cut(s) 16, 97, 213
MboII GAAGA 8 cut(s) 157, 166, 205, 208, 223, 250, 339, 342
MflI RGATCY 1 cut(s) 16
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 208, 294
MnlI CCTC 3 cut(s) 61, 150, 249
MroNI GCCGGC 1 cut(s) 339
MseI TTAA 2 cut(s) 92, 231
MspI CCGG 4 cut(s) 6, 304, 322, 340
NaeI GCCGGC 1 cut(s) 341
NdeI CATATG 1 cut(s) 248
NdeII GATC 3 cut(s) 16, 97, 213
NgoMIV GCCGGC 1 cut(s) 339
NlaIII CATG 1 cut(s) 451
NlaIV GGNNCC 1 cut(s) 18
NspI RCATGY 1 cut(s) 451
PciI ACATGT 1 cut(s) 447
PdiI GCCGGC 1 cut(s) 341
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 2 cut(s) 162, 261
PleI GAGTC 2 cut(s) 207, 294
PpsI GAGTC 2 cut(s) 207, 294
Ppu21I YACGTR 1 cut(s) 133
PscI ACATGT 1 cut(s) 447
PsiI TTATAA 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 191
PsuI RGATCY 1 cut(s) 16
RsaI GTAC 2 cut(s) 64, 89
RsaNI GTAC 2 cut(s) 63, 88
SaqAI TTAA 2 cut(s) 92, 231
SatI GCNGC 2 cut(s) 161, 260
Sau3AI GATC 3 cut(s) 16, 97, 213
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 2 cut(s) 208, 294
SetI ASST 9 cut(s) 53, 74, 122, 135, 165, 179, 246, 279, 459
SfcI CTRYAG 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 253
SmoI CTYRAG 1 cut(s) 253
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 349
SsiI CCGC 1 cut(s) 358
SspMI CTAG 1 cut(s) 66
TaiI ACGT 1 cut(s) 135
TasI AATT 1 cut(s) 349
TatI WGTACW 1 cut(s) 62
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 92, 231
Tru9I TTAA 2 cut(s) 92, 231
TseI GCWGC 2 cut(s) 160, 259
TspDTI ATGAA 1 cut(s) 446
XceI RCATGY 1 cut(s) 451
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.