Rroxscaffold_6G00420550

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012023
Physical Location & Seq
Forward (+)
41764625 .. 41765414
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420550.1

Sequence Viewer

Length: 348 bp
ATGGCCGGCCTGTGGGAGCCGCATCCGAACCCAACTCTCAGCAGAACCACTTCATCGAGTAGTACTAGTAGCTTTGGTGGGTTCTTCATGGATCATCAGAGCAATACTCACGGCGCTTATAACTACGTGATGATGGAGAAGATGGAGAAGAGGCAGCTTTTTCTTAGAAGCTACCAGTTCTGCAGGAAGAAGAGTCTGGCGGAGAAGATTAAAGGGTCTTTGGTTAAAGTGAAGAGGGTCATATGCTTGAGGCTGCGTAATGCTAAAAAGCTTAGGAAATCGGTTTGCTTCAGATTCCGAGCCAAATGGGGAGAAATTAAAGGTGTTGAAAACAAGTTCAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.41

Weight (kDa)

10.51

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AciI CCGC 2 cut(s) 20, 200
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 2 cut(s) 329, 340
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 4 cut(s) 72, 157, 171, 271
AluI AGCT 4 cut(s) 72, 157, 171, 271
AlwI GGATC 1 cut(s) 99
AoxI GGCC 2 cut(s) 3, 7
ApeKI GCWGC 2 cut(s) 154, 253
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 166, 240
BccI CCATC 2 cut(s) 127, 136
BceAI ACGGC 1 cut(s) 127
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 20, 155, 254
BlsI GCNGC 3 cut(s) 21, 156, 255
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 166, 240
BshFI GGCC 2 cut(s) 5, 9
BsiSI CCGG 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 5, 9
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 2 cut(s) 20, 200
BspANI GGCC 2 cut(s) 5, 9
BspCNI CTCAG 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 1 cut(s) 91
Bst6I CTCTTC 3 cut(s) 143, 185, 227
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 38, 164, 272
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 166, 240
BsuRI GGCC 2 cut(s) 5, 9
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 88
CviJI RGCY 9 cut(s) 5, 9, 19, 72, 157, 171, 253, 271, 302
CviKI_1 RGCY 9 cut(s) 5, 9, 19, 72, 157, 171, 253, 271, 302
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 38, 164, 272
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 143, 185, 227
EarI CTCTTC 3 cut(s) 143, 185, 227
EciI GGCGGA 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 274
FaeI CATG 1 cut(s) 91
FaiI YATR 4 cut(s) 89, 120, 242, 244
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 20, 155, 254
FokI GGATG 1 cut(s) 9
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 20, 155, 254
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 20, 155, 254
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 5, 9
HapII CCGG 1 cut(s) 6
HhaI GCGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 2 cut(s) 193, 294
HpaII CCGG 1 cut(s) 6
Hpy188I TCNGA 4 cut(s) 27, 99, 293, 299
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 183
HpyF3I CTNAG 3 cut(s) 38, 164, 272
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 5 cut(s) 19, 23, 169, 182, 188
Lsp1109I GCAGC 2 cut(s) 166, 240
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 7 cut(s) 76, 151, 160, 199, 202, 217, 244
MluCI AATT 1 cut(s) 315
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 3 cut(s) 144, 228, 243
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 3 cut(s) 210, 225, 318
MspI CCGG 1 cut(s) 6
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 242
NdeII GATC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 18
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 3 cut(s) 21, 156, 255
PleI GAGTC 1 cut(s) 201
PpsI GAGTC 1 cut(s) 201
Ppu21I YACGTR 1 cut(s) 127
PsiI TTATAA 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 185
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 210, 225, 318
SatI GCNGC 3 cut(s) 20, 155, 254
Sau3AI GATC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 1 cut(s) 202
SetI ASST 7 cut(s) 74, 129, 159, 173, 273, 325, 345
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 20, 200
SspMI CTAG 1 cut(s) 66
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 315
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 3 cut(s) 210, 225, 318
Tru9I TTAA 3 cut(s) 210, 225, 318
TseI GCWGC 2 cut(s) 154, 253
TspDTI ATGAA 2 cut(s) 42, 76
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.