MD04G1183600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012023
Physical Location & Seq
Forward (+)
27484653 .. 27486232
1580 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1183600.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGCCCGCCTGTGGGGACAGAGCTATCACCACGTGGGAACCGACCCGTCAATCAGCAGAAGCACCTCAGTGGCTAGGAGTACTAGCAGTGGGTCCTTCTACAACAGCTACATGGAGCAGGGAAGCAGCAACTACACGTTGATGGAGAAGAGGCAGCTTTTTCTCAGAAGCTACCAGTTCAGCAGGAAGAAGAGCCTGACGGAGAAGATAAAAGGGTCTTTTTGCAAAGTCAAGAGGGCGATATGCCTGCGGCTGAGGTCGGCGAGGAAGCTCCGGAAACTGGTTTCTTTCAAGCTCAGGTATGGCGTTTCTTTCCGGAGAAGAAGACTCTGCCGTCTGCTGAATAATTACCGTCGTACCCGCAAATGCGATAAGTCCTATTGCTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

15.54

Weight (kDa)

11.14

Isoelectric Point (pI)

68.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 333
AccIII TCCGGA 2 cut(s) 273, 315
AciI CCGC 3 cut(s) 7, 250, 361
AcvI CACGTG 1 cut(s) 34
AdeI CACNNNGTG 1 cut(s) 34
AfaI GTAC 2 cut(s) 82, 358
AfiI CCNNNNNNNGG 3 cut(s) 12, 13, 280
AflIII ACRYGT 1 cut(s) 135
AgsI TTSAA 1 cut(s) 292
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 6 cut(s) 24, 108, 157, 171, 271, 295
AluI AGCT 6 cut(s) 24, 108, 157, 171, 271, 295
Aor13HI TCCGGA 2 cut(s) 273, 315
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 126, 154
AspS9I GGNCC 2 cut(s) 4, 93
AsuHPI GGTGA 1 cut(s) 20
AvaII GGWCC 1 cut(s) 93
BaeI ACNNNNGTAYC 2 cut(s) 340, 373
BbrPI CACGTG 1 cut(s) 34
BbsI GAAGAC 1 cut(s) 331
BbvCI CCTCAGC 1 cut(s) 254
BbvI GCAGC 2 cut(s) 138, 166
BccI CCATC 1 cut(s) 136
BceAI ACGGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BfaI CTAG 2 cut(s) 75, 84
BisI GCNGC 3 cut(s) 127, 155, 251
BlsI GCNGC 3 cut(s) 128, 156, 252
BmcAI AGTACT 1 cut(s) 82
Bme18I GGWCC 1 cut(s) 93
BmgT120I GGNCC 2 cut(s) 4, 93
BmiI GGNNCC 2 cut(s) 40, 94
BpiI GAAGAC 1 cut(s) 331
Bpu10I CCTNAGC 2 cut(s) 254, 296
BsaAI YACGTR 1 cut(s) 34
BsaWI WCCGGW 2 cut(s) 273, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 12, 13, 280
Bse1I ACTGG 2 cut(s) 175, 285
BseAI TCCGGA 2 cut(s) 273, 315
BseLI CCNNNNNNNGG 3 cut(s) 12, 13, 280
BseMII CTCAG 4 cut(s) 81, 178, 245, 310
BseNI ACTGG 2 cut(s) 175, 285
BseXI GCAGC 2 cut(s) 138, 166
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 274, 316
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 12, 13, 280
BsmFI GGGAC 1 cut(s) 30
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 2 cut(s) 273, 315
BspACI CCGC 3 cut(s) 7, 250, 361
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 80, 177, 246, 309
BspEI TCCGGA 2 cut(s) 273, 315
BspLI GGNNCC 2 cut(s) 40, 94
BspQI GCTCTTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 175, 285
Bst4CI ACNGT 1 cut(s) 353
Bst6I CTCTTC 2 cut(s) 143, 185
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 7, 248
BstDEI CTNAG 4 cut(s) 67, 164, 254, 296
BstV1I GCAGC 2 cut(s) 138, 166
BstV2I GAAGAC 1 cut(s) 331
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 94
BtsIMutI CAGTG 2 cut(s) 75, 94
Cac8I GCNNGC 2 cut(s) 7, 248
Cfr13I GGNCC 2 cut(s) 4, 93
Csp6I GTAC 2 cut(s) 81, 357
CviAII CATG 1 cut(s) 112
CviQI GTAC 2 cut(s) 81, 357
DdeI CTNAG 4 cut(s) 67, 164, 254, 296
DraIII CACNNNGTG 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 333
DseDI GACNNNNNNGTC 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 143, 185
EarI CTCTTC 2 cut(s) 143, 185
Eco47I GGWCC 1 cut(s) 93
Eco72I CACGTG 1 cut(s) 34
EcoO109I RGGNCCY 1 cut(s) 93
FaeI CATG 1 cut(s) 115
FaiI YATR 3 cut(s) 113, 244, 303
FaqI GGGAC 1 cut(s) 30
FatI CATG 1 cut(s) 111
FauI CCCGC 2 cut(s) 14, 368
Fnu4HI GCNGC 3 cut(s) 127, 155, 251
Fsp4HI GCNGC 3 cut(s) 127, 155, 251
FspBI CTAG 2 cut(s) 75, 84
GluI GCNGC 3 cut(s) 127, 155, 251
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 274, 316
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 327
HpaII CCGG 2 cut(s) 274, 316
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 167
Hpy188III TCNNGA 3 cut(s) 232, 274, 316
Hpy99I CGWCG 1 cut(s) 357
HpyAV CCTTC 1 cut(s) 106
HpyCH4III ACNGT 1 cut(s) 353
HpyCH4IV ACGT 2 cut(s) 33, 137
HpyCH4V TGCA 1 cut(s) 225
HpyF3I CTNAG 4 cut(s) 67, 164, 254, 296
HpySE526I ACGT 2 cut(s) 33, 137
Hsp92II CATG 1 cut(s) 115
Kpn2I TCCGGA 2 cut(s) 273, 315
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 115, 276
Lsp1109I GCAGC 2 cut(s) 138, 166
MaeI CTAG 2 cut(s) 75, 84
MaeII ACGT 2 cut(s) 33, 137
MboII GAAGA 6 cut(s) 160, 199, 202, 217, 333, 336
MluCI AATT 1 cut(s) 346
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 5 cut(s) 76, 144, 228, 249, 258
MroI TCCGGA 2 cut(s) 273, 315
MslI CAYNNNNRTG 2 cut(s) 68, 140
MspI CCGG 2 cut(s) 274, 316
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 40, 94
OliI CACNNNNGTG 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PkrI GCNGC 3 cut(s) 128, 156, 252
PleI GAGTC 1 cut(s) 321
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
PspCI CACGTG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 40, 94
PspPI GGNCC 2 cut(s) 4, 93
PspPPI RGGWCCY 1 cut(s) 93
RsaI GTAC 2 cut(s) 82, 358
RsaNI GTAC 2 cut(s) 81, 357
RseI CAYNNNNRTG 2 cut(s) 68, 140
SapI GCTCTTC 1 cut(s) 185
SatI GCNGC 3 cut(s) 127, 155, 251
Sau96I GGNCC 2 cut(s) 4, 93
ScaI AGTACT 1 cut(s) 82
SchI GAGTC 1 cut(s) 321
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 68, 140
Sse9I AATT 1 cut(s) 346
SsiI CCGC 3 cut(s) 7, 250, 361
SspMI CTAG 2 cut(s) 75, 84
TaaI ACNGT 1 cut(s) 353
TaiI ACGT 2 cut(s) 36, 140
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 80
TauI GCSGC 1 cut(s) 253
TscAI CASTG 2 cut(s) 75, 94
TseI GCWGC 2 cut(s) 126, 154
TspGWI ACGGA 1 cut(s) 215
TspRI CASTG 2 cut(s) 75, 94
VpaK11BI GGWCC 1 cut(s) 93
XspI CTAG 2 cut(s) 75, 84
ZrmI AGTACT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.