Rmu_sc0033812.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033812.1
OG0012023
Physical Location & Seq
Reverse (-)
15778 .. 16170
393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033812.1_g000005.1.cds

Sequence Viewer

Length: 393 bp
atggccggcctgtgggagccgcatccgaacccaactctcagcagaaccacttcatcgagtagtactagtagctttggtgggttcttcatggatcatcagagcaatactcacggcgcttataactacgtgatgatggagaagatggagaagaggcagctttttcttagaagctaccagttctgcaggaagaagagtctggccgagaagattaaagggtctttggttaaagtgaaaagggtcatatgcttgaggctgcgtaatgctaaaaagcttaggaaatcggtttgcttcagattccggtatggattttctttccggagaagaagaatatgcagactcttgaattactaccgccataacaggaaatgcgataactcgtattgcttctggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

15.67

Weight (kDa)

10.64

Isoelectric Point (pI)

56.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 315
AciI CCGC 2 cut(s) 20, 352
AclWI GGATC 1 cut(s) 99
AcoI YGGCCR 2 cut(s) 3, 198
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 64
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 343
AhlI ACTAGT 1 cut(s) 65
AluBI AGCT 4 cut(s) 72, 157, 171, 271
AluI AGCT 4 cut(s) 72, 157, 171, 271
AlwI GGATC 1 cut(s) 99
Aor13HI TCCGGA 1 cut(s) 315
AoxI GGCC 3 cut(s) 3, 7, 198
ApeKI GCWGC 2 cut(s) 154, 253
Asp700I GAANNNNTTC 1 cut(s) 49
AspLEI GCGC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 166, 240
BccI CCATC 2 cut(s) 127, 136
BceAI ACGGC 1 cut(s) 127
BcuI ACTAGT 1 cut(s) 65
BfaI CTAG 1 cut(s) 66
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 117
BisI GCNGC 3 cut(s) 20, 155, 254
BlsI GCNGC 3 cut(s) 21, 156, 255
BmcAI AGTACT 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 91, 123
Bpu10I CCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 268
BsaAI YACGTR 1 cut(s) 127
BsaWI WCCGGW 2 cut(s) 297, 315
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 315
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 166, 240
BshFI GGCC 3 cut(s) 5, 9, 200
BsiSI CCGG 3 cut(s) 6, 298, 316
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 3 cut(s) 5, 9, 200
Bsp13I TCCGGA 1 cut(s) 315
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 2 cut(s) 20, 352
BspANI GGCC 3 cut(s) 5, 9, 200
BspCNI CTCAG 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 315
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 185
BspPI GGATC 1 cut(s) 99
BsrFI RCCGGY 1 cut(s) 5
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 1 cut(s) 91
Bst6I CTCTTC 2 cut(s) 143, 185
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 3 cut(s) 38, 164, 272
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 181
BstV1I GCAGC 2 cut(s) 166, 240
BsuRI GGCC 3 cut(s) 5, 9, 200
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 7
CfoI GCGC 1 cut(s) 116
Cfr10I RCCGGY 1 cut(s) 5
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 88
CviJI RGCY 9 cut(s) 5, 9, 19, 72, 157, 171, 200, 253, 271
CviKI_1 RGCY 9 cut(s) 5, 9, 19, 72, 157, 171, 200, 253, 271
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 3 cut(s) 38, 164, 272
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
EaeI YGGCCR 2 cut(s) 3, 198
Eam1104I CTCTTC 2 cut(s) 143, 185
EarI CTCTTC 2 cut(s) 143, 185
Eco57I CTGAAG 1 cut(s) 274
FaeI CATG 1 cut(s) 91
FaiI YATR 7 cut(s) 89, 120, 242, 244, 303, 331, 357
FatI CATG 1 cut(s) 87
FauNDI CATATG 1 cut(s) 242
Fnu4HI GCNGC 3 cut(s) 20, 155, 254
FokI GGATG 1 cut(s) 9
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 3 cut(s) 20, 155, 254
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 20, 155, 254
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 3 cut(s) 5, 9, 200
HapII CCGG 3 cut(s) 6, 298, 316
HhaI GCGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 269
HinfI GANTC 3 cut(s) 193, 294, 336
HpaII CCGG 3 cut(s) 6, 298, 316
Hpy188I TCNGA 3 cut(s) 27, 99, 293
Hpy188III TCNNGA 2 cut(s) 316, 340
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 2 cut(s) 183, 333
HpyF3I CTNAG 3 cut(s) 38, 164, 272
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 315
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 91
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 9 cut(s) 19, 23, 169, 182, 188, 311, 329, 346, 373
Lsp1109I GCAGC 2 cut(s) 166, 240
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 8 cut(s) 76, 151, 160, 199, 202, 217, 333, 336
MluCI AATT 1 cut(s) 343
MlyI GAGTC 2 cut(s) 202, 330
MnlI CCTC 2 cut(s) 144, 243
MroI TCCGGA 1 cut(s) 315
MroNI GCCGGC 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 49
MseI TTAA 2 cut(s) 210, 225
MspI CCGG 3 cut(s) 6, 298, 316
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 242
NdeII GATC 1 cut(s) 91
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 226
PdiI GCCGGC 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 49
PfeI GAWTC 1 cut(s) 294
PkrI GCNGC 3 cut(s) 21, 156, 255
PleI GAGTC 2 cut(s) 201, 330
PpsI GAGTC 2 cut(s) 201, 330
Ppu21I YACGTR 1 cut(s) 127
PsiI TTATAA 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 185
RigI GGCCGGCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 2 cut(s) 210, 225
SatI GCNGC 3 cut(s) 20, 155, 254
Sau3AI GATC 1 cut(s) 91
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 2 cut(s) 202, 330
SetI ASST 5 cut(s) 74, 129, 159, 173, 273
SfaNI GCATC 1 cut(s) 31
SfcI CTRYAG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SpeI ACTAGT 1 cut(s) 65
Sse9I AATT 1 cut(s) 343
SsiI CCGC 2 cut(s) 20, 352
SspMI CTAG 1 cut(s) 66
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 56
TasI AATT 1 cut(s) 343
TatI WGTACW 1 cut(s) 62
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 294
Tru1I TTAA 2 cut(s) 210, 225
Tru9I TTAA 2 cut(s) 210, 225
TseI GCWGC 2 cut(s) 154, 253
TspDTI ATGAA 2 cut(s) 42, 76
XmnI GAANNNNTTC 1 cut(s) 49
XspI CTAG 1 cut(s) 66
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.