Rorug03G0033200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0012023
Physical Location & Seq
Reverse (-)
2654497 .. 2655417
921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0033200.1

Sequence Viewer

Length: 921 bp
ATGAAGAGAAAGGCTTTGATGGAACTAGATGTTGAAATCGCAGCTCAGCCACCGCGAAAACGGTTCAAGCCCCGACCCACCGAGTACTTGGAGGAGCCCCGGAGCCTGGAGAGTCTATGGAAGGCTGTGTTTCCCGCTGGGACACCGAGGTCTGTTTTGGACTCACCACTCTACCATTCTTTCAGGTGGGATTTCTCGAATCTTGAAGGAGCACTCGAAGAAGGGGGAAAGTTGTACAAGAAGAGCAACAGAGTCTATCTATTCGGATCCACGGAGGAAGCCATGGTTAAGAGAGAAGTGGTTGCTTTGATCCCTGTGGTGGTGGCCGTTGTTTCGGCTTCTGCGCCTTCCAATGAGCTTGGACTTGTTTTAAGTGAGGGAAAAGTGGAAGAGATAATTCCGATGAAGAGATTGAAGATAGACTGGGCTCTGTATGTTCCTTTGGACAAGAGAGTAGACAAAGAAGGGCCTGAAATCTTTGTCTTGAGCTGCAAGCAAAGAAGGGCTGCTCTCAAACACAAAAATGTCAAGGGAAACAGTGATCTATTGAAGTTTGAATACTCCGTGCCTTATTTGGATCCAGCGGTGCAAGTAATGTGTCATGAAGTTCATGTTCAGGAGGTGGAGGAGTACTTTAGTGCTAATGATGATGAGCTGGAGGAGTTGTACTTCAGTGGTGATGATGAGAACCAGGTGATTGAAGAAGGTGATGAAAAGAATGTGAAGGTGGAAGAAGAAGCAAAGGGAGAAAATATTGATCTTGGAGTTAGGGAAGGCGGCCGAAGAAGAAGTGTGGAGAATATAATGAAGATGAGGATTTACAAGTTCTATCCGGTACAAACACCGGATACTCCTGACATATCTGAGTTTAAGAATGCATTTGTCAACAGGTACTATGGCACTGCTCATGAGATTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

35.09

Weight (kDa)

5.28

Isoelectric Point (pI)

55.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 148
AccI GTMKAC 1 cut(s) 456
AccII CGCG 1 cut(s) 55
AciI CCGC 4 cut(s) 53, 135, 584, 777
AclWI GGATC 5 cut(s) 261, 274, 304, 572, 585
AcoI YGGCCR 2 cut(s) 324, 778
AcuI CTGAAG 1 cut(s) 655
AfaI GTAC 6 cut(s) 86, 236, 632, 668, 837, 893
AfiI CCNNNNNNNGG 2 cut(s) 106, 319
AgsI TTSAA 7 cut(s) 35, 67, 206, 415, 550, 557, 701
AjnI CCWGG 2 cut(s) 105, 690
AluBI AGCT 4 cut(s) 44, 358, 489, 655
AluI AGCT 4 cut(s) 44, 358, 489, 655
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 5 cut(s) 261, 274, 304, 572, 585
AoxI GGCC 3 cut(s) 324, 467, 778
ApeKI GCWGC 3 cut(s) 41, 489, 506
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 467
AsuC2I CCSGG 1 cut(s) 100
AsuHPI GGTGA 4 cut(s) 156, 689, 706, 719
BamHI GGATCC 2 cut(s) 266, 577
BanII GRGCYC 2 cut(s) 99, 430
BarI GAAGNNNNNNTAC 2 cut(s) 542, 574
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 3 cut(s) 53, 476, 493
BccI CCATC 1 cut(s) 13
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 107, 692
BciVI GTATCC 1 cut(s) 841
BcnI CCSGG 1 cut(s) 100
BfaI CTAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 841
BisI GCNGC 4 cut(s) 42, 490, 507, 778
BlpI GCTNAGC 1 cut(s) 45
BlsI GCNGC 4 cut(s) 43, 491, 508, 779
BmcAI AGTACT 2 cut(s) 86, 632
Bme1390I CCNGG 3 cut(s) 100, 107, 692
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 4 cut(s) 96, 104, 268, 579
BmrFI CCNGG 3 cut(s) 100, 107, 692
BmrI ACTGGG 1 cut(s) 433
BmuI ACTGGG 1 cut(s) 433
BpmI CTGGAG 2 cut(s) 128, 677
Bpu1102I GCTNAGC 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 98, 146, 270, 282
BsaWI WCCGGW 2 cut(s) 832, 844
BsaXI ACNNNNNCTCC 2 cut(s) 650, 680
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 319
Bse1I ACTGG 1 cut(s) 428
BseBI CCWGG 2 cut(s) 107, 692
BseDI CCNNGG 4 cut(s) 98, 146, 270, 282
BseLI CCNNNNNNNGG 2 cut(s) 106, 319
BseMII CTCAG 2 cut(s) 59, 855
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 107, 641, 674
BseX3I CGGCCG 1 cut(s) 778
BseXI GCAGC 3 cut(s) 53, 476, 493
BseYI CCCAGC 1 cut(s) 137
Bsh1236I CGCG 1 cut(s) 55
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 3 cut(s) 326, 469, 780
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 1 cut(s) 214
BsiSI CCGG 3 cut(s) 100, 833, 845
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 2 cut(s) 106, 319
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 880
BsnI GGCC 3 cut(s) 326, 469, 780
Bsp1286I GDGCHC 3 cut(s) 99, 214, 430
Bsp1407I TGTACA 1 cut(s) 234
Bsp143I GATC 5 cut(s) 266, 309, 541, 577, 757
Bsp1720I GCTNAGC 1 cut(s) 45
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 4 cut(s) 53, 135, 584, 777
BspANI GGCC 3 cut(s) 326, 469, 780
BspCNI CTCAG 2 cut(s) 58, 856
BspFNI CGCG 1 cut(s) 55
BspHI TCATGA 2 cut(s) 601, 907
BspLI GGNNCC 4 cut(s) 96, 104, 268, 579
BspPI GGATC 5 cut(s) 261, 274, 304, 572, 585
BspQI GCTCTTC 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 428
BssECI CCNNGG 4 cut(s) 98, 146, 270, 282
BssMI GATC 5 cut(s) 266, 309, 541, 577, 757
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 107, 692
Bst4CI ACNGT 2 cut(s) 63, 539
Bst6I CTCTTC 3 cut(s) 236, 384, 401
BstAUI TGTACA 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 45, 864
BstDSI CCRYGG 2 cut(s) 270, 282
BstFNI CGCG 1 cut(s) 55
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 5 cut(s) 269, 312, 544, 580, 760
BstMBI GATC 5 cut(s) 266, 309, 541, 577, 757
BstMCI CGRYCG 1 cut(s) 781
BstNI CCWGG 2 cut(s) 107, 692
BstSCI CCNGG 3 cut(s) 98, 105, 690
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 53, 476, 493
BstX2I RGATCY 2 cut(s) 266, 577
BstYI RGATCY 2 cut(s) 266, 577
BstZI CGGCCG 1 cut(s) 778
BsuI GTATCC 1 cut(s) 841
BsuRI GGCC 3 cut(s) 326, 469, 780
BtgI CCRYGG 2 cut(s) 270, 282
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 3 cut(s) 544, 679, 900
Cac8I GCNNGC 1 cut(s) 494
CciI TCATGA 2 cut(s) 601, 907
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 467
CsiI ACCWGGT 1 cut(s) 690
Csp6I GTAC 6 cut(s) 85, 235, 631, 667, 836, 892
CviAII CATG 4 cut(s) 283, 602, 611, 908
CviQI GTAC 6 cut(s) 85, 235, 631, 667, 836, 892
DdeI CTNAG 2 cut(s) 45, 864
DpnI GATC 5 cut(s) 268, 311, 543, 579, 759
DpnII GATC 5 cut(s) 266, 309, 541, 577, 757
DrdI GACNNNNNNGTC 1 cut(s) 148
DseDI GACNNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 324, 778
EagI CGGCCG 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 236, 384, 401
EarI CTCTTC 3 cut(s) 236, 384, 401
EclXI CGGCCG 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 99, 430
Eco52I CGGCCG 1 cut(s) 778
Eco57I CTGAAG 1 cut(s) 655
EcoO109I RGGNCCY 1 cut(s) 467
EcoRII CCWGG 2 cut(s) 105, 690
EcoT14I CCWWGG 1 cut(s) 282
EcoT22I ATGCAT 1 cut(s) 880
EcoT38I GRGCYC 2 cut(s) 99, 430
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 286, 605, 614, 911
FaiI YATR 9 cut(s) 118, 284, 435, 603, 612, 803, 860, 897, 909
FaqI GGGAC 1 cut(s) 154
FatI CATG 4 cut(s) 282, 601, 610, 907
FauI CCCGC 1 cut(s) 142
FblI GTMKAC 1 cut(s) 456
Fnu4HI GCNGC 4 cut(s) 42, 490, 507, 778
FriOI GRGCYC 2 cut(s) 99, 430
Fsp4HI GCNGC 4 cut(s) 42, 490, 507, 778
FspBI CTAG 1 cut(s) 26
GlaI GCGC 1 cut(s) 345
GluI GCNGC 4 cut(s) 42, 490, 507, 778
GsaI CCCAGC 1 cut(s) 141
GsuI CTGGAG 2 cut(s) 128, 677
HaeIII GGCC 3 cut(s) 326, 469, 780
HapII CCGG 3 cut(s) 100, 833, 845
HhaI GCGC 1 cut(s) 346
Hin1II CATG 4 cut(s) 286, 605, 614, 911
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 5 cut(s) 112, 161, 199, 252, 913
HpaII CCGG 3 cut(s) 100, 833, 845
HphI GGTGA 4 cut(s) 156, 689, 706, 719
Hpy166II GTNNAC 2 cut(s) 457, 886
Hpy188I TCNGA 3 cut(s) 266, 402, 865
Hpy188III TCNNGA 7 cut(s) 196, 203, 484, 602, 617, 854, 908
Hpy8I GTNNAC 2 cut(s) 457, 886
HpyAV CCTTC 9 cut(s) 115, 200, 215, 357, 458, 495, 698, 718, 767
HpyCH4III ACNGT 2 cut(s) 63, 539
HpyCH4V TGCA 3 cut(s) 492, 589, 878
HpyF3I CTNAG 2 cut(s) 45, 864
Hsp92II CATG 4 cut(s) 286, 605, 614, 911
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 5 cut(s) 266, 309, 541, 577, 757
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 3 cut(s) 94, 102, 209
Lsp1109I GCAGC 3 cut(s) 53, 476, 493
MabI ACCWGGT 1 cut(s) 690
MaeI CTAG 1 cut(s) 26
MalI GATC 5 cut(s) 268, 311, 543, 579, 759
MboI GATC 5 cut(s) 266, 309, 541, 577, 757
MflI RGATCY 2 cut(s) 266, 577
MhlI GDGCHC 3 cut(s) 99, 214, 430
MluCI AATT 1 cut(s) 396
MlyI GAGTC 3 cut(s) 121, 155, 261
MnlI CCTC 8 cut(s) 85, 141, 268, 370, 613, 619, 652, 807
Mph1103I ATGCAT 1 cut(s) 880
MseI TTAA 3 cut(s) 288, 371, 870
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 2 cut(s) 137, 584
MspI CCGG 3 cut(s) 100, 833, 845
MspR9I CCNGG 3 cut(s) 100, 107, 692
Mva1269I GAATGC 1 cut(s) 880
MvaI CCWGG 2 cut(s) 107, 692
MvnI CGCG 1 cut(s) 55
NciI CCSGG 1 cut(s) 100
NcoI CCATGG 1 cut(s) 282
NdeII GATC 5 cut(s) 266, 309, 541, 577, 757
NlaIII CATG 4 cut(s) 286, 605, 614, 911
NlaIV GGNNCC 4 cut(s) 96, 104, 268, 579
NsiI ATGCAT 1 cut(s) 880
PagI TCATGA 2 cut(s) 601, 907
PciSI GCTCTTC 1 cut(s) 236
PctI GAATGC 1 cut(s) 880
PfeI GAWTC 2 cut(s) 199, 913
PkrI GCNGC 4 cut(s) 43, 491, 508, 779
PleI GAGTC 3 cut(s) 120, 155, 260
PpsI GAGTC 3 cut(s) 120, 155, 260
Psp6I CCWGG 2 cut(s) 105, 690
PspFI CCCAGC 1 cut(s) 137
PspGI CCWGG 2 cut(s) 105, 690
PspN4I GGNNCC 4 cut(s) 96, 104, 268, 579
PspPI GGNCC 1 cut(s) 467
PsuI RGATCY 2 cut(s) 266, 577
RsaI GTAC 6 cut(s) 86, 236, 632, 668, 837, 893
RsaNI GTAC 6 cut(s) 85, 235, 631, 667, 836, 892
RseI CAYNNNNRTG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 3 cut(s) 288, 371, 870
SatI GCNGC 4 cut(s) 42, 490, 507, 778
Sau3AI GATC 5 cut(s) 266, 309, 541, 577, 757
Sau96I GGNCC 1 cut(s) 467
ScaI AGTACT 2 cut(s) 86, 632
SchI GAGTC 3 cut(s) 121, 155, 261
ScrFI CCNGG 3 cut(s) 100, 107, 692
SduI GDGCHC 3 cut(s) 99, 214, 430
SexAI ACCWGGT 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 1 cut(s) 396
SsiI CCGC 4 cut(s) 53, 135, 584, 777
SspI AATATT 1 cut(s) 754
SspMI CTAG 1 cut(s) 26
StyD4I CCNGG 3 cut(s) 98, 105, 690
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 2 cut(s) 63, 539
TaqI TCGA 2 cut(s) 197, 216
TasI AATT 1 cut(s) 396
TatI WGTACW 4 cut(s) 84, 234, 630, 666
TauI GCSGC 1 cut(s) 780
TfiI GAWTC 2 cut(s) 199, 913
Tru1I TTAA 3 cut(s) 288, 371, 870
Tru9I TTAA 3 cut(s) 288, 371, 870
TscAI CASTG 3 cut(s) 544, 679, 907
TseI GCWGC 3 cut(s) 41, 489, 506
TspDTI ATGAA 6 cut(s) 17, 419, 599, 618, 726, 821
TspGWI ACGGA 2 cut(s) 287, 553
TspRI CASTG 3 cut(s) 544, 679, 907
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 1 cut(s) 26
ZrmI AGTACT 2 cut(s) 86, 632
Zsp2I ATGCAT 1 cut(s) 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.