Prupe.6G302100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012023
Physical Location & Seq
Forward (+)
27414350 .. 27415279
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G302100.1

Sequence Viewer

Length: 396 bp
ATGGCCGGCCTGTGGGGACAGAGCATTCACCATGTGGGCCCAAACCCATCAATCAGTAGAAGTAACTCATTGAATAGCAGCAGCAGCGGCAGTGGGTGCTATTACAACAGCTACATGGAGCTGAGCAGCAACAACTACACGATGATGGAGAAGAGGCAGCTTTTTCTTAGAAGCTATCAGTTCAGCAGGAAGAAGAGCCTGACAGAGAGGATCAAAGGGTCTTTTTGCAAAGCCAAGAAGGTCATATGGCTGAGGCTGCGTTCAGCTCGGAAGCTTAGGAAGTTGGTCTGCTTTAGACTCAGATATGGACTTGCCTACCGGAGAAGAAGACTCTGCCGTCTCCTGAACAATTACCACCATACCCGCAAATGCAATAACTCCTACTGTTTCTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.61

Weight (kDa)

10.76

Isoelectric Point (pI)

59.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012023)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05937 AT5G26731
fragaria_vesca FvH4_6g08790
malus_domestica MD04G1183600.v1.1 MD12G1197000.v1.1
prunus_persica Prupe.6G302100_v2.0.a1
pyrus_communis pycom04g16210 pycom12g18330
rosa_chinensis RchiOBHm_Chr3g0459051
rosa_laevigata RLG00000025123
rosa_multiflora Rmu_sc0004343.1_g000014 Rmu_sc0006910.1_g000004 Rmu_sc0033812.1_g000005
rosa_roxburghii Rroxscaffold_6G00420550
rosa_rugosa Rorug03G0033200
rosa_samantha Rh3BG094100 Rh3CG094600 Rh3DG094600
rosa_wichuraiana Rw3G007810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 336
AciI CCGC 2 cut(s) 87, 364
AclWI GGATC 1 cut(s) 218
AcoI YGGCCR 1 cut(s) 3
AdeI CACNNNGTG 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 6 cut(s) 111, 121, 160, 174, 266, 274
AluI AGCT 6 cut(s) 111, 121, 160, 174, 266, 274
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 218
AoxI GGCC 3 cut(s) 3, 7, 37
ApaI GGGCCC 1 cut(s) 41
ApeKI GCWGC 6 cut(s) 78, 81, 84, 126, 157, 256
AspS9I GGNCC 2 cut(s) 37, 38
AsuHPI GGTGA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 41
BanII GRGCYC 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 334
BbvCI CCTCAGC 1 cut(s) 251
BbvI GCAGC 6 cut(s) 90, 93, 96, 138, 169, 243
BccI CCATC 2 cut(s) 55, 139
BceAI ACGGC 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 344
BisI GCNGC 7 cut(s) 79, 82, 85, 88, 127, 158, 257
BlpI GCTNAGC 1 cut(s) 122
BlsI GCNGC 7 cut(s) 80, 83, 86, 89, 128, 159, 258
BmgT120I GGNCC 2 cut(s) 37, 38
BmiI GGNNCC 1 cut(s) 39
BpiI GAAGAC 1 cut(s) 334
Bpu10I CCTNAGC 2 cut(s) 251, 275
Bpu1102I GCTNAGC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 318
Bsc4I CCNNNNNNNGG 1 cut(s) 12
Bse118I RCCGGY 1 cut(s) 5
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 113, 242, 313
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 6 cut(s) 90, 93, 96, 138, 169, 243
BshFI GGCC 3 cut(s) 5, 9, 39
BsiSI CCGG 2 cut(s) 6, 319
BslFI GGGAC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 12
BsmAI GTCTC 1 cut(s) 344
BsmBI CGTCTC 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 30
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 3 cut(s) 5, 9, 39
Bsp120I GGGCCC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 210
Bsp1720I GCTNAGC 1 cut(s) 122
BspACI CCGC 2 cut(s) 87, 364
BspANI GGCC 3 cut(s) 5, 9, 39
BspCNI CTCAG 3 cut(s) 114, 243, 312
BspLI GGNNCC 1 cut(s) 39
BspPI GGATC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 188
BsrFI RCCGGY 1 cut(s) 5
BssAI RCCGGY 1 cut(s) 5
BssMI GATC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 2 cut(s) 146, 188
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 122, 167, 251, 275, 299
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 256
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 6 cut(s) 90, 93, 96, 138, 169, 243
BstV2I GAAGAC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 5, 9, 39
BtsI GCAGTG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 5
Cfr13I GGNCC 2 cut(s) 37, 38
CviAII CATG 2 cut(s) 32, 115
DdeI CTNAG 5 cut(s) 122, 167, 251, 275, 299
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
DraIII CACNNNGTG 1 cut(s) 34
DrdI GACNNNNNNGTC 1 cut(s) 336
DseDI GACNNNNNNGTC 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 146, 188
EarI CTCTTC 2 cut(s) 146, 188
Eco24I GRGCYC 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 344
FaeI CATG 2 cut(s) 35, 118
FaiI YATR 6 cut(s) 33, 116, 245, 247, 306, 360
FaqI GGGAC 1 cut(s) 30
FatI CATG 2 cut(s) 31, 114
FauI CCCGC 1 cut(s) 371
FauNDI CATATG 1 cut(s) 245
Fnu4HI GCNGC 7 cut(s) 79, 82, 85, 88, 127, 158, 257
FriOI GRGCYC 1 cut(s) 41
FseI GGCCGGCC 1 cut(s) 9
Fsp4HI GCNGC 7 cut(s) 79, 82, 85, 88, 127, 158, 257
GluI GCNGC 7 cut(s) 79, 82, 85, 88, 127, 158, 257
HaeIII GGCC 3 cut(s) 5, 9, 39
HapII CCGG 2 cut(s) 6, 319
Hin1II CATG 2 cut(s) 35, 118
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 297, 330
HpaII CCGG 2 cut(s) 6, 319
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 2 cut(s) 270, 302
Hpy188III TCNNGA 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4V TGCA 2 cut(s) 228, 372
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 256
HpyF3I CTNAG 5 cut(s) 122, 167, 251, 275, 299
Hsp92II CATG 2 cut(s) 35, 118
KroI GCCGGC 1 cut(s) 5
KroNI GCCGGC 1 cut(s) 7
Kzo9I GATC 1 cut(s) 210
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 7 cut(s) 19, 23, 172, 212, 332, 356, 376
Lsp1109I GCAGC 6 cut(s) 90, 93, 96, 138, 169, 243
MaeIII GTNAC 1 cut(s) 62
MalI GATC 1 cut(s) 212
MboI GATC 1 cut(s) 210
MboII GAAGA 5 cut(s) 163, 202, 205, 336, 339
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 1 cut(s) 349
MlyI GAGTC 2 cut(s) 291, 324
MnlI CCTC 3 cut(s) 147, 201, 246
MroNI GCCGGC 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 87
MspI CCGG 2 cut(s) 6, 319
Mva1269I GAATGC 1 cut(s) 24
MwoI GCNNNNNNNGC 4 cut(s) 84, 87, 96, 256
NaeI GCCGGC 1 cut(s) 7
NdeI CATATG 1 cut(s) 245
NdeII GATC 1 cut(s) 210
NgoMIV GCCGGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 35, 118
NlaIV GGNNCC 1 cut(s) 39
PciSI GCTCTTC 1 cut(s) 188
PctI GAATGC 1 cut(s) 24
PdiI GCCGGC 1 cut(s) 7
PkrI GCNGC 7 cut(s) 80, 83, 86, 89, 128, 159, 258
PleI GAGTC 2 cut(s) 291, 324
PpsI GAGTC 2 cut(s) 291, 324
PspN4I GGNNCC 1 cut(s) 39
PspOMI GGGCCC 1 cut(s) 37
PspPI GGNCC 2 cut(s) 37, 38
RigI GGCCGGCC 1 cut(s) 9
RseI CAYNNNNRTG 1 cut(s) 143
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 7 cut(s) 79, 82, 85, 88, 127, 158, 257
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 2 cut(s) 37, 38
SchI GAGTC 2 cut(s) 291, 324
SduI GDGCHC 1 cut(s) 41
SetI ASST 7 cut(s) 113, 123, 162, 176, 243, 268, 276
SmiMI CAYNNNNRTG 1 cut(s) 143
Sse9I AATT 1 cut(s) 349
SsiI CCGC 2 cut(s) 87, 364
TaaI ACNGT 1 cut(s) 386
TasI AATT 1 cut(s) 349
TauI GCSGC 1 cut(s) 90
TscAI CASTG 1 cut(s) 97
TseI GCWGC 6 cut(s) 78, 81, 84, 126, 157, 256
TspRI CASTG 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.