FvH4_6g12020

anion transporter 3

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
7248295 .. 7252129
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12020.t4

Sequence Viewer

Length: 1569 bp
ATGGCGGTTGTAACTCCTGCCAAATCTGTACTACATTCCTCAATACCTGACCCACACCCTTCTCATTTCTCAGCCTCCCCATCAAATTTGATTAGTGCAAGAGCAACCCAGTTGGGGTTTAGGCCTAGATTGCTCCACCAAGCAAAACCCACAAAATGGGTGGAGGGTTTTGGCTATGGTTTAGGAAGAAACAGAGGATCAAGAACAGATAGGCTTCAGAGGAAGCCATGGGTGGTCAAGTGTACAGCAGAGGGCATAGAGAGGGGGATGTTTGTTGGGAGAAGAGAAAGAGGAGGAGAAGCCAAGCAGTTAGTGAGAGTGCCAGAGAGGTTCAAGGTTGTGGTTCTATTGGCTTGTGTGATGTGTCTTTGTAATGCTGACAGAGTTGTCATGTCTGTGGCCATTGTTCCGCTTGCAGCTCAAAAGGGTTGGACTAGTTCTTTCTTGGGTGTTGTTCAGTCATCCTTTCTATGGGGTTATATCTTCTCATCAGTAATCGGAGGAGCCTTAGTAGATAGATATGGAGGGAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCCACTCTCCTGACTCCCTGGGCTGCCAACCATTCTACAACCAGCCTATTGGCTGTTCGTGCATTCTTTGGACTCGCTGAAGGTGTGGCCCTGCCTTCCATGAGCACCCTCTTATCAAGGTGGTTCCCAACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGCAATGTTACTGGCTTACTACTAACTCCAGTTATGCTGTCGTCAATGGGAATAAATGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTCCTCTGGTCGACAATATGGGCATCTACAGTCACAAATGATCCAAGAGAGAGTGATTTCATCAGCAAATCAGAGCTCCGGTTAATCCAAGCAGGAAAATCTGATTCTCCAGTAAGCAATGACAAGTTCCCACCTCTGCGGCTCCTACTATCAAAATTACCAACATGGAGTATTATTTTTGCCAATATAACTAATAACTGGGGATATTTTGTTCTACTTTCTTGGATGCCTGTTTATTTCAAGACTGTATTTAATGTAAACTTAAAACAAGCAGCTTGGTTCAGTGCTGTTCCATGGGGATCTATGGCAATTTCCAGCTGCATTGCTGGCACAGCATCAGATTGCTTAATCAAGGCAGGCTACTCTTTGACGATAGTCCGCAAGATCATGCAGTCCATTGGTTTCATTGGGCCTGGAGTGTCATTGCTGTGCTTGAACTATGTCAACACACCCACGGCTGCAGCAGTTCTCCTTACAGTGGCGTTATGTTTGAGCTCTTTCAGTCAAGCTGGCTTTCTTCTCAATATACAGGATATAGCTCCTGAGTCTGCCGGATTTCTCCATGGAATTTCAAATTCAGCAGGGACATTTGCAGCAATAGTCAGCACAATAGGAACAGGCTATTTTGTACAATGGCTGGGATCGTTTCAGGCATTCCTAACTGTCACTGCAGCTCTCTATTTCATGACAACCATCTTTTGGAACCTTTTCGCTACTGGAGAGCGAGTCTTCTAG

Protein Analysis

523

Amino Acids

56.6

Weight (kDa)

9.91

Isoelectric Point (pI)

30.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 118 - 450 3.9e-44 Major Facilitator Superfamily
Sugar_tr PF00083 145 - 261 9.8e-08 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 386
AccB7I CCANNNNNTGG 2 cut(s) 156, 1533
AccI GTMKAC 1 cut(s) 845
AciI CCGC 4 cut(s) 5, 410, 973, 1213
AclWI GGATC 4 cut(s) 205, 869, 1141, 1483
AcoI YGGCCR 3 cut(s) 399, 552, 567
AcsI RAATTY 4 cut(s) 85, 723, 1401, 1408
AcuI CTGAAG 2 cut(s) 200, 666
AfaI GTAC 3 cut(s) 30, 244, 1464
AfiI CCNNNNNNNGG 5 cut(s) 114, 156, 471, 1312, 1533
AgsI TTSAA 4 cut(s) 334, 1075, 1270, 1407
AhlI ACTAGT 1 cut(s) 434
AjnI CCWGG 2 cut(s) 584, 1246
AloI GAACNNNNNNTCC 2 cut(s) 1029, 1061
AluBI AGCT 9 cut(s) 419, 710, 910, 1109, 1152, 1329, 1343, 1373, 1508
AluI AGCT 9 cut(s) 419, 710, 910, 1109, 1152, 1329, 1343, 1373, 1508
Alw21I GWGCWC 3 cut(s) 674, 912, 1331
AlwI GGATC 4 cut(s) 205, 869, 1141, 1483
AoxI GGCC 6 cut(s) 122, 399, 552, 567, 654, 1244
ApeKI GCWGC 8 cut(s) 416, 590, 1106, 1152, 1292, 1295, 1427, 1505
ApoI RAATTY 4 cut(s) 85, 723, 1401, 1408
Asp700I GAANNNNTTC 1 cut(s) 1541
AspS9I GGNCC 3 cut(s) 655, 806, 1244
AvaII GGWCC 1 cut(s) 806
BalI TGGCCA 3 cut(s) 401, 554, 569
BanII GRGCYC 2 cut(s) 912, 1331
BbsI GAAGAC 1 cut(s) 1555
Bbv12I GWGCWC 3 cut(s) 674, 912, 1331
BbvI GCAGC 8 cut(s) 428, 577, 1118, 1139, 1279, 1307, 1439, 1517
BccI CCATC 3 cut(s) 88, 532, 1535
BceAI ACGGC 1 cut(s) 1305
BciT130I CCWGG 2 cut(s) 586, 1248
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 4 cut(s) 126, 435, 711, 1567
BfmI CTRYAG 3 cut(s) 861, 1293, 1503
BisI GCNGC 9 cut(s) 417, 591, 974, 1107, 1153, 1293, 1296, 1428, 1506
BlsI GCNGC 9 cut(s) 418, 592, 975, 1108, 1154, 1294, 1297, 1429, 1507
Bme1390I CCNGG 2 cut(s) 586, 1248
Bme18I GGWCC 1 cut(s) 806
BmgT120I GGNCC 3 cut(s) 655, 806, 1244
BmiI GGNNCC 5 cut(s) 505, 692, 808, 977, 1538
BmrFI CCNGG 2 cut(s) 586, 1248
BmrI ACTGGG 2 cut(s) 103, 1042
BmsI GCATC 3 cut(s) 866, 1050, 1178
BmuI ACTGGG 2 cut(s) 103, 1042
BoxI GACNNNNGTC 1 cut(s) 1208
BpiI GAAGAC 1 cut(s) 1555
BpmI CTGGAG 3 cut(s) 759, 927, 1269
BsaJI CCNNGG 7 cut(s) 227, 584, 585, 829, 1127, 1287, 1396
BsaWI WCCGGW 1 cut(s) 912
BsaXI ACNNNNNCTCC 3 cut(s) 495, 525, 1545
Bsc4I CCNNNNNNNGG 5 cut(s) 114, 156, 471, 1312, 1533
Bse1I ACTGG 6 cut(s) 109, 763, 776, 944, 1037, 1555
Bse3DI GCAATG 4 cut(s) 757, 958, 1155, 1256
BseBI CCWGG 2 cut(s) 586, 1248
BseDI CCNNGG 7 cut(s) 227, 584, 585, 829, 1127, 1287, 1396
BseGI GGATG 3 cut(s) 273, 461, 1065
BseLI CCNNNNNNNGG 5 cut(s) 114, 156, 471, 1312, 1533
BseMI GCAATG 4 cut(s) 757, 958, 1155, 1256
BseMII CTCAG 2 cut(s) 84, 1368
BseNI ACTGG 6 cut(s) 109, 763, 776, 944, 1037, 1555
BseRI GAGGAG 5 cut(s) 306, 309, 516, 814, 827
BseXI GCAGC 8 cut(s) 428, 577, 1118, 1139, 1279, 1307, 1439, 1517
BseYI CCCAGC 2 cut(s) 734, 1471
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 6 cut(s) 124, 401, 554, 569, 656, 1246
BsiHKAI GWGCWC 3 cut(s) 674, 912, 1331
BsiSI CCGG 2 cut(s) 913, 1386
BslFI GGGAC 2 cut(s) 792, 1432
BslI CCNNNNNNNGG 5 cut(s) 114, 156, 471, 1312, 1533
BsmFI GGGAC 2 cut(s) 792, 1432
BsmI GAATGC 2 cut(s) 629, 1487
BsnI GGCC 6 cut(s) 124, 401, 554, 569, 656, 1246
Bsp1286I GDGCHC 3 cut(s) 674, 912, 1331
Bsp1407I TGTACA 2 cut(s) 242, 1462
Bsp143I GATC 5 cut(s) 197, 874, 1133, 1218, 1475
Bsp19I CCATGG 3 cut(s) 227, 1127, 1396
BspACI CCGC 4 cut(s) 5, 410, 973, 1213
BspANI GGCC 6 cut(s) 124, 401, 554, 569, 656, 1246
BspCNI CTCAG 2 cut(s) 83, 1369
BspHI TCATGA 1 cut(s) 1518
BspLI GGNNCC 5 cut(s) 505, 692, 808, 977, 1538
BspMAI CTGCAG 2 cut(s) 1297, 1507
BspPI GGATC 4 cut(s) 205, 869, 1141, 1483
BsrDI GCAATG 4 cut(s) 757, 958, 1155, 1256
BsrGI TGTACA 2 cut(s) 242, 1462
BsrI ACTGG 6 cut(s) 109, 763, 776, 944, 1037, 1555
BssECI CCNNGG 7 cut(s) 227, 584, 585, 829, 1127, 1287, 1396
BssMI GATC 5 cut(s) 197, 874, 1133, 1218, 1475
BssT1I CCWWGG 4 cut(s) 227, 829, 1127, 1396
Bst2UI CCWGG 2 cut(s) 586, 1248
Bst4CI ACNGT 4 cut(s) 865, 1081, 1312, 1498
Bst6I CTCTTC 3 cut(s) 277, 524, 824
BstAUI TGTACA 2 cut(s) 242, 1462
BstC8I GCNNGC 4 cut(s) 414, 1162, 1192, 1345
BstDEI CTNAG 3 cut(s) 70, 508, 1377
BstDSI CCRYGG 4 cut(s) 227, 1127, 1287, 1396
BstF5I GGATG 3 cut(s) 273, 461, 1065
BstKTI GATC 5 cut(s) 200, 877, 1136, 1221, 1478
BstMBI GATC 5 cut(s) 197, 874, 1133, 1218, 1475
BstMWI GCNNNNNNNGC 4 cut(s) 130, 626, 1161, 1166
BstNI CCWGG 2 cut(s) 586, 1248
BstPAI GACNNNNGTC 1 cut(s) 1208
BstSCI CCNGG 2 cut(s) 584, 1246
BstSFI CTRYAG 3 cut(s) 861, 1293, 1503
BstV1I GCAGC 8 cut(s) 428, 577, 1118, 1139, 1279, 1307, 1439, 1517
BstV2I GAAGAC 1 cut(s) 1555
BstX2I RGATCY 1 cut(s) 1133
BstXI CCANNNNNNTGG 1 cut(s) 616
BstYI RGATCY 1 cut(s) 1133
BsuRI GGCC 6 cut(s) 124, 401, 554, 569, 656, 1246
BtgI CCRYGG 4 cut(s) 227, 1127, 1287, 1396
BtsCI GGATG 3 cut(s) 273, 461, 1065
BtsI GCAGTG 1 cut(s) 1500
BtsIMutI CAGTG 3 cut(s) 1123, 1317, 1500
Cac8I GCNNGC 4 cut(s) 414, 1162, 1192, 1345
CciI TCATGA 1 cut(s) 1518
Cfr13I GGNCC 3 cut(s) 655, 806, 1244
Csp6I GTAC 3 cut(s) 29, 243, 1463
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviQI GTAC 3 cut(s) 29, 243, 1463
DdeI CTNAG 3 cut(s) 70, 508, 1377
DpnI GATC 5 cut(s) 199, 876, 1135, 1220, 1477
DpnII GATC 5 cut(s) 197, 874, 1133, 1218, 1475
DrdI GACNNNNNNGTC 1 cut(s) 386
DseDI GACNNNNNNGTC 1 cut(s) 386
EaeI YGGCCR 3 cut(s) 399, 552, 567
Eam1104I CTCTTC 3 cut(s) 277, 524, 824
EarI CTCTTC 3 cut(s) 277, 524, 824
Ecl136II GAGCTC 2 cut(s) 910, 1329
Eco130I CCWWGG 4 cut(s) 227, 829, 1127, 1396
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 2 cut(s) 912, 1331
Eco47I GGWCC 1 cut(s) 806
Eco53kI GAGCTC 2 cut(s) 910, 1329
Eco57I CTGAAG 2 cut(s) 200, 666
EcoICRI GAGCTC 2 cut(s) 910, 1329
EcoRII CCWGG 2 cut(s) 584, 1246
EcoT14I CCWWGG 4 cut(s) 227, 829, 1127, 1396
EcoT38I GRGCYC 2 cut(s) 912, 1331
ErhI CCWWGG 4 cut(s) 227, 829, 1127, 1396
FaqI GGGAC 2 cut(s) 792, 1432
FblI GTMKAC 1 cut(s) 845
Fnu4HI GCNGC 9 cut(s) 417, 591, 974, 1107, 1153, 1293, 1296, 1428, 1506
FokI GGATG 3 cut(s) 280, 448, 1072
FriOI GRGCYC 2 cut(s) 912, 1331
Fsp4HI GCNGC 9 cut(s) 417, 591, 974, 1107, 1153, 1293, 1296, 1428, 1506
FspBI CTAG 4 cut(s) 126, 435, 711, 1567
GluI GCNGC 9 cut(s) 417, 591, 974, 1107, 1153, 1293, 1296, 1428, 1506
GsaI CCCAGC 2 cut(s) 738, 1475
GsuI CTGGAG 3 cut(s) 759, 927, 1269
HaeIII GGCC 6 cut(s) 124, 401, 554, 569, 656, 1246
HapII CCGG 2 cut(s) 913, 1386
HincII GTYRAC 2 cut(s) 846, 1279
HindII GTYRAC 2 cut(s) 846, 1279
HinfI GANTC 6 cut(s) 580, 639, 834, 938, 1379, 1560
HpaII CCGG 2 cut(s) 913, 1386
Hpy166II GTNNAC 4 cut(s) 243, 846, 1093, 1279
Hpy188I TCNGA 5 cut(s) 219, 500, 907, 937, 1174
Hpy188III TCNNGA 5 cut(s) 201, 577, 1075, 1376, 1519
Hpy8I GTNNAC 4 cut(s) 243, 846, 1093, 1279
HpyAV CCTTC 3 cut(s) 69, 641, 672
HpyCH4III ACNGT 4 cut(s) 865, 1081, 1312, 1498
HpyCH4V TGCA 9 cut(s) 98, 416, 629, 716, 1155, 1225, 1295, 1427, 1505
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 626, 1161, 1166
HpyF3I CTNAG 3 cut(s) 70, 508, 1377
Kzo9I GATC 5 cut(s) 197, 874, 1133, 1218, 1475
LmnI GCTCC 5 cut(s) 138, 503, 915, 981, 1378
Lsp1109I GCAGC 8 cut(s) 428, 577, 1118, 1139, 1279, 1307, 1439, 1517
LweI GCATC 3 cut(s) 866, 1050, 1178
MaeI CTAG 4 cut(s) 126, 435, 711, 1567
MaeIII GTNAC 4 cut(s) 10, 754, 865, 1498
MalI GATC 5 cut(s) 199, 876, 1135, 1220, 1477
MboI GATC 5 cut(s) 197, 874, 1133, 1218, 1475
MboII GAAGA 7 cut(s) 198, 294, 475, 541, 811, 1343, 1555
MflI RGATCY 1 cut(s) 1133
MhlI GDGCHC 3 cut(s) 674, 912, 1331
MlsI TGGCCA 3 cut(s) 401, 554, 569
MluCI AATT 6 cut(s) 85, 723, 989, 1143, 1401, 1408
MluNI TGGCCA 3 cut(s) 401, 554, 569
MlyI GAGTC 5 cut(s) 574, 633, 828, 1388, 1569
MmeI TCCRAC 2 cut(s) 410, 700
Mox20I TGGCCA 3 cut(s) 401, 554, 569
MroXI GAANNNNTTC 1 cut(s) 1541
MscI TGGCCA 3 cut(s) 401, 554, 569
MseI TTAA 4 cut(s) 917, 1086, 1097, 1181
MslI CAYNNNNRTG 2 cut(s) 395, 1261
Msp20I TGGCCA 3 cut(s) 401, 554, 569
MspA1I CMGCKG 1 cut(s) 1152
MspI CCGG 2 cut(s) 913, 1386
MspR9I CCNGG 2 cut(s) 586, 1248
Mva1269I GAATGC 2 cut(s) 629, 1487
MvaI CCWGG 2 cut(s) 586, 1248
MwoI GCNNNNNNNGC 4 cut(s) 130, 626, 1161, 1166
NcoI CCATGG 3 cut(s) 227, 1127, 1396
NdeII GATC 5 cut(s) 197, 874, 1133, 1218, 1475
NlaIV GGNNCC 5 cut(s) 505, 692, 808, 977, 1538
NmuCI GTSAC 2 cut(s) 865, 1498
PagI TCATGA 1 cut(s) 1518
PasI CCCWGGG 1 cut(s) 585
PceI AGGCCT 1 cut(s) 124
PctI GAATGC 2 cut(s) 629, 1487
PdmI GAANNNNTTC 1 cut(s) 1541
PfeI GAWTC 1 cut(s) 938
PflMI CCANNNNNTGG 2 cut(s) 156, 1533
PkrI GCNGC 9 cut(s) 418, 592, 975, 1108, 1154, 1294, 1297, 1429, 1507
PleI GAGTC 5 cut(s) 574, 633, 828, 1387, 1568
PpsI GAGTC 5 cut(s) 574, 633, 828, 1387, 1568
PshAI GACNNNNGTC 1 cut(s) 1208
Psp124BI GAGCTC 2 cut(s) 912, 1331
Psp6I CCWGG 2 cut(s) 584, 1246
PspFI CCCAGC 2 cut(s) 734, 1471
PspGI CCWGG 2 cut(s) 584, 1246
PspN4I GGNNCC 5 cut(s) 505, 692, 808, 977, 1538
PspPI GGNCC 3 cut(s) 655, 806, 1244
PstI CTGCAG 2 cut(s) 1297, 1507
PsuI RGATCY 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1152
RsaI GTAC 3 cut(s) 30, 244, 1464
RsaNI GTAC 3 cut(s) 29, 243, 1463
RseI CAYNNNNRTG 2 cut(s) 395, 1261
SacI GAGCTC 2 cut(s) 912, 1331
SalI GTCGAC 1 cut(s) 844
SaqAI TTAA 4 cut(s) 917, 1086, 1097, 1181
SatI GCNGC 9 cut(s) 417, 591, 974, 1107, 1153, 1293, 1296, 1428, 1506
Sau3AI GATC 5 cut(s) 197, 874, 1133, 1218, 1475
Sau96I GGNCC 3 cut(s) 655, 806, 1244
SchI GAGTC 5 cut(s) 574, 633, 828, 1388, 1569
ScrFI CCNGG 2 cut(s) 586, 1248
SduI GDGCHC 3 cut(s) 674, 912, 1331
SfaNI GCATC 3 cut(s) 866, 1050, 1178
SfcI CTRYAG 3 cut(s) 861, 1293, 1503
SinI GGWCC 1 cut(s) 806
SmiMI CAYNNNNRTG 2 cut(s) 395, 1261
SpeI ACTAGT 1 cut(s) 434
Sse9I AATT 6 cut(s) 85, 723, 989, 1143, 1401, 1408
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 4 cut(s) 5, 410, 973, 1213
SspMI CTAG 4 cut(s) 126, 435, 711, 1567
SstI GAGCTC 2 cut(s) 912, 1331
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 584, 1246
StyI CCWWGG 4 cut(s) 227, 829, 1127, 1396
TaaI ACNGT 4 cut(s) 865, 1081, 1312, 1498
TaqI TCGA 1 cut(s) 845
TasI AATT 6 cut(s) 85, 723, 989, 1143, 1401, 1408
TatI WGTACW 3 cut(s) 28, 242, 1462
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 1 cut(s) 938
Tru1I TTAA 4 cut(s) 917, 1086, 1097, 1181
Tru9I TTAA 4 cut(s) 917, 1086, 1097, 1181
TscAI CASTG 3 cut(s) 1123, 1317, 1507
TseFI GTSAC 2 cut(s) 865, 1498
TseI GCWGC 8 cut(s) 416, 590, 1106, 1152, 1292, 1295, 1427, 1505
Tsp45I GTSAC 2 cut(s) 865, 1498
TspDTI ATGAA 5 cut(s) 717, 731, 883, 1228, 1507
TspRI CASTG 3 cut(s) 1123, 1317, 1507
Van91I CCANNNNNTGG 2 cut(s) 156, 1533
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 4 cut(s) 85, 723, 1401, 1408
XcmI CCANNNNNNNNNTGG 2 cut(s) 157, 562
XmiI GTMKAC 1 cut(s) 845
XmnI GAANNNNTTC 1 cut(s) 1541
XspI CTAG 4 cut(s) 126, 435, 711, 1567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.