Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010728

Physical Location & Seq

Genomic Coordinates Reverse (-)

38269181 .. 38272213

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGCGGCTGTAACTCCTGCCAAATCTGTACTACATTCCTCGAGACCTAACCCACACCCGTCTCGTTTCTCAGCGTCCCCATCAACTTTGATCAATGCAAGATTAACCCAGTTGGGGCTTCGGCCTAGATTGCTCCACCAAGCAAAACCCACAAAATGGGTGGAGGGTTTTGCTTATGGTTTAGGAAGAAACAGGGGAGCAAGAACAGAGAGGCTTCAGAGGAAACCATGTCTGGTGATGTGTACAGCAGAGGGCATAGAGAGGGGGATGATGATTGGGAGCAGAGAGAGGGGTTCTCTAGTGAGAGTGCCAGAGAGGTTCAAGTCATCCTTTCTATGGGGATATATCTTCTCATCAGTAATCGGAGGAGCCTTAGTAGACAGATATGGAGGGAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCCACTCTCCTCACTCCCTGGGCTGCCAACCATTCTACAACCAGCCTATTGGCTGTTCGTGCCTTCTTTGGACTCGCTGAAGGTGTGGCCCTGCCTTCCATGAGCACCCTCTTATCAAGGTGGTTCCCGACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGTAATGTTACCGGCTTACTACTAACTCCAGTTATGCTGTCATCAATGGGATTTTCTGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTGCTCTGGTTGATAATATGGACATATACAGTCACAAATGATCCAAGAGAGAGTGATTTCATCAGCAAATCAGAGCTCCGGTTGATCCAAGCTGGAAAATCTGATTCTCCAGTAAGCAACGACAAGTTCCCACCTCTGCAGCTCCTACTATCAAAACTACCAACATGGAGTATTATATTTGCCAACATAACTAATAATTGGGTATTTAATGTAAACTTGAAACAAGCAGCTTGGTTTAGTGCTGTTCCATGGGGAACAATGGCAATTTCCAGCTGCATTGCTGGCACAACATCAGATTCCTTAATCAAGGCTGGCTACTCTTTGACGATAGTCCGAAAGATCATGCAGTCCATTGGTTTCATTGGGCCTGGAGTGTCATTGCTGTGCTTGAACTATGCCAACACACCCACGGCTGCAGCGGTACTCCTTACAGCAGCCTTATGTTTGAGCTCTTTCAGTCAAGCTGGCTTTCTCCTCAATATACAAGATATAGCTCCTGAGTCTGCCGGGTTTCTCCATGGTAAGTTATTGGAAGGAAGGATTGTATTCTATTTTCCTCTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

421

Amino Acids

45.75

Weight (kDa)

10.13

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	108 - 182	6.3e-06	Sugar (and other) transporter
MFS_1	PF07690	109 - 404	1.7e-35	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38060 AT2G38060
fragaria_vesca	FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica	MD04G1146900.v1.1
prunus_persica	Prupe.6G270700_v2.0.a1
pyrus_communis	pycom04g13270
rosa_chinensis	RchiOBHm_Chr3g0463851
rosa_laevigata	RLG00000024750
rosa_multiflora	Rmu_sc0004796.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416250
rosa_rugosa	Rorug03G0068400 Rorug03G0068500
rosa_samantha	Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana	Rw3G010600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	156
AccI	GTMKAC	1 cut(s)	378
AciI	CCGC	2 cut(s)	5, 1118
AclWI	GGATC	2 cut(s)	734, 778
AcoI	YGGCCR	2 cut(s)	417, 432
AcsI	RAATTY	1 cut(s)	588
AcuI	CTGAAG	2 cut(s)	200, 531
AfaI	GTAC	3 cut(s)	30, 244, 1122
AfiI	CCNNNNNNNGG	3 cut(s)	114, 156, 336
AgsI	TTSAA	3 cut(s)	322, 919, 1090
AjnI	CCWGG	2 cut(s)	449, 1066
AluBI	AGCT	9 cut(s)	575, 775, 791, 841, 929, 972, 1149, 1163, 1193
AluI	AGCT	9 cut(s)	575, 775, 791, 841, 929, 972, 1149, 1163, 1193
Alw21I	GWGCWC	3 cut(s)	539, 777, 1151
Alw26I	GTCTC	2 cut(s)	37, 66
AlwI	GGATC	2 cut(s)	734, 778
Ama87I	CYCGRG	1 cut(s)	40
AoxI	GGCC	5 cut(s)	122, 417, 432, 519, 1064
ApeKI	GCWGC	7 cut(s)	455, 838, 926, 972, 1112, 1115, 1133
ApoI	RAATTY	1 cut(s)	588
AspS9I	GGNCC	3 cut(s)	520, 671, 1064
AsuC2I	CCSGG	1 cut(s)	1207
AsuHPI	GGTGA	1 cut(s)	247
AvaI	CYCGRG	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	671
BalI	TGGCCA	2 cut(s)	419, 434
BanII	GRGCYC	2 cut(s)	777, 1151
Bbv12I	GWGCWC	3 cut(s)	539, 777, 1151
BbvI	GCAGC	7 cut(s)	442, 850, 938, 959, 1099, 1127, 1145
BccI	CCATC	2 cut(s)	88, 397
BceAI	ACGGC	1 cut(s)	1125
BciT130I	CCWGG	2 cut(s)	451, 1068
BclI	TGATCA	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	1207
BcoDI	GTCTC	2 cut(s)	37, 66
BfaI	CTAG	3 cut(s)	126, 299, 576
BfmI	CTRYAG	2 cut(s)	836, 1113
BisI	GCNGC	8 cut(s)	6, 456, 839, 927, 973, 1113, 1116, 1134
BlsI	GCNGC	8 cut(s)	7, 457, 840, 928, 974, 1114, 1117, 1135
Bme1390I	CCNGG	3 cut(s)	451, 1068, 1207
Bme18I	GGWCC	1 cut(s)	671
BmeT110I	CYCGRG	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	520, 671, 1064
BmiI	GGNNCC	3 cut(s)	370, 557, 673
BmrFI	CCNGG	3 cut(s)	451, 1068, 1207
BmrI	ACTGGG	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	1028
BplI	GAGNNNNNCTC	2 cut(s)	280, 312
BpmI	CTGGAG	3 cut(s)	624, 792, 1089
BpuMI	CCSGG	1 cut(s)	1207
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	6 cut(s)	449, 450, 694, 947, 1107, 1216
BsaWI	WCCGGW	1 cut(s)	777
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	114, 156, 336
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	3 cut(s)	109, 641, 809
Bse3DI	GCAATG	2 cut(s)	975, 1076
BseBI	CCWGG	2 cut(s)	451, 1068
BseDI	CCNNGG	6 cut(s)	449, 450, 694, 947, 1107, 1216
BseGI	GGATG	2 cut(s)	273, 326
BseLI	CCNNNNNNNGG	3 cut(s)	114, 156, 336
BseMI	GCAATG	2 cut(s)	975, 1076
BseMII	CTCAG	2 cut(s)	84, 1188
BseNI	ACTGG	3 cut(s)	109, 641, 809
BseRI	GAGGAG	4 cut(s)	381, 431, 679, 1163
BseXI	GCAGC	7 cut(s)	442, 850, 938, 959, 1099, 1127, 1145
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	5 cut(s)	124, 419, 434, 521, 1066
BsiHKAI	GWGCWC	3 cut(s)	539, 777, 1151
BsiHKCI	CYCGRG	1 cut(s)	40
BsiSI	CCGG	3 cut(s)	624, 778, 1206
BslFI	GGGAC	2 cut(s)	61, 657
BslI	CCNNNNNNNGG	3 cut(s)	114, 156, 336
BsmAI	GTCTC	2 cut(s)	37, 66
BsmBI	CGTCTC	1 cut(s)	66
BsmFI	GGGAC	2 cut(s)	61, 657
BsnI	GGCC	5 cut(s)	124, 419, 434, 521, 1066
Bso31I	GGTCTC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	40
Bsp1286I	GDGCHC	3 cut(s)	539, 777, 1151
Bsp1407I	TGTACA	1 cut(s)	242
Bsp143I	GATC	4 cut(s)	90, 739, 783, 1038
Bsp19I	CCATGG	2 cut(s)	947, 1216
BspACI	CCGC	2 cut(s)	5, 1118
BspANI	GGCC	5 cut(s)	124, 419, 434, 521, 1066
BspCNI	CTCAG	2 cut(s)	83, 1189
BspLI	GGNNCC	3 cut(s)	370, 557, 673
BspMAI	CTGCAG	2 cut(s)	840, 1117
BspPI	GGATC	2 cut(s)	734, 778
BspTNI	GGTCTC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	975, 1076
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	242
BsrI	ACTGG	3 cut(s)	109, 641, 809
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	6 cut(s)	449, 450, 694, 947, 1107, 1216
BssMI	GATC	4 cut(s)	90, 739, 783, 1038
BssT1I	CCWWGG	3 cut(s)	694, 947, 1216
Bst2UI	CCWGG	2 cut(s)	451, 1068
Bst4CI	ACNGT	1 cut(s)	730
Bst6I	CTCTTC	2 cut(s)	389, 689
BstAUI	TGTACA	1 cut(s)	242
BstC8I	GCNNGC	3 cut(s)	982, 1012, 1165
BstDEI	CTNAG	3 cut(s)	70, 373, 1197
BstDSI	CCRYGG	3 cut(s)	947, 1107, 1216
BstF5I	GGATG	2 cut(s)	273, 326
BstKTI	GATC	4 cut(s)	93, 742, 786, 1041
BstMAI	GTCTC	2 cut(s)	37, 66
BstMBI	GATC	4 cut(s)	90, 739, 783, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 491, 981
BstNI	CCWGG	2 cut(s)	451, 1068
BstPAI	GACNNNNGTC	1 cut(s)	1028
BstSCI	CCNGG	3 cut(s)	449, 1066, 1205
BstSFI	CTRYAG	2 cut(s)	836, 1113
BstV1I	GCAGC	7 cut(s)	442, 850, 938, 959, 1099, 1127, 1145
BstXI	CCANNNNNNTGG	1 cut(s)	481
BsuRI	GGCC	5 cut(s)	124, 419, 434, 521, 1066
BtgI	CCRYGG	3 cut(s)	947, 1107, 1216
BtsCI	GGATG	2 cut(s)	273, 326
Cac8I	GCNNGC	3 cut(s)	982, 1012, 1165
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	520, 671, 1064
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	3 cut(s)	29, 243, 1121
CspCI	CAANNNNNGTGG	2 cut(s)	141, 176
CviAII	CATG	9 cut(s)	228, 408, 421, 532, 566, 864, 948, 1042, 1217
CviQI	GTAC	3 cut(s)	29, 243, 1121
DdeI	CTNAG	3 cut(s)	70, 373, 1197
DpnI	GATC	4 cut(s)	92, 741, 785, 1040
DpnII	GATC	4 cut(s)	90, 739, 783, 1038
EaeI	YGGCCR	2 cut(s)	417, 432
Eam1104I	CTCTTC	2 cut(s)	389, 689
EarI	CTCTTC	2 cut(s)	389, 689
Ecl136II	GAGCTC	2 cut(s)	775, 1149
Eco130I	CCWWGG	3 cut(s)	694, 947, 1216
Eco24I	GRGCYC	2 cut(s)	777, 1151
Eco31I	GGTCTC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	671
Eco53kI	GAGCTC	2 cut(s)	775, 1149
Eco57I	CTGAAG	2 cut(s)	200, 531
Eco88I	CYCGRG	1 cut(s)	40
EcoICRI	GAGCTC	2 cut(s)	775, 1149
EcoRII	CCWGG	2 cut(s)	449, 1066
EcoT14I	CCWWGG	3 cut(s)	694, 947, 1216
EcoT38I	GRGCYC	2 cut(s)	777, 1151
ErhI	CCWWGG	3 cut(s)	694, 947, 1216
Esp3I	CGTCTC	1 cut(s)	66
FaeI	CATG	9 cut(s)	231, 411, 424, 535, 569, 867, 951, 1045, 1220
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	61, 657
FatI	CATG	9 cut(s)	227, 407, 420, 531, 565, 863, 947, 1041, 1216
FbaI	TGATCA	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	378
Fnu4HI	GCNGC	8 cut(s)	6, 456, 839, 927, 973, 1113, 1116, 1134
FokI	GGATG	2 cut(s)	280, 313
FriOI	GRGCYC	2 cut(s)	777, 1151
Fsp4HI	GCNGC	8 cut(s)	6, 456, 839, 927, 973, 1113, 1116, 1134
FspBI	CTAG	3 cut(s)	126, 299, 576
GluI	GCNGC	8 cut(s)	6, 456, 839, 927, 973, 1113, 1116, 1134
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	3 cut(s)	624, 792, 1089
HaeIII	GGCC	5 cut(s)	124, 419, 434, 521, 1066
HapII	CCGG	3 cut(s)	624, 778, 1206
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	9 cut(s)	231, 411, 424, 535, 569, 867, 951, 1045, 1220
HinfI	GANTC	4 cut(s)	504, 803, 995, 1199
HpaII	CCGG	3 cut(s)	624, 778, 1206
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	3 cut(s)	243, 379, 913
Hpy188I	TCNGA	6 cut(s)	219, 365, 772, 802, 994, 1034
Hpy188III	TCNNGA	3 cut(s)	42, 559, 1196
Hpy8I	GTNNAC	3 cut(s)	243, 379, 913
HpyAV	CCTTC	5 cut(s)	505, 506, 537, 1226, 1230
HpyCH4III	ACNGT	1 cut(s)	730
HpyCH4V	TGCA	6 cut(s)	98, 581, 838, 975, 1045, 1115
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 491, 981
HpyF3I	CTNAG	3 cut(s)	70, 373, 1197
Hsp92II	CATG	9 cut(s)	231, 411, 424, 535, 569, 867, 951, 1045, 1220
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	90, 739, 783, 1038
LmnI	GCTCC	7 cut(s)	138, 197, 279, 368, 780, 846, 1198
Lsp1109I	GCAGC	7 cut(s)	442, 850, 938, 959, 1099, 1127, 1145
MaeI	CTAG	3 cut(s)	126, 299, 576
MaeIII	GTNAC	3 cut(s)	10, 619, 730
MalI	GATC	4 cut(s)	92, 741, 785, 1040
MboI	GATC	4 cut(s)	90, 739, 783, 1038
MboII	GAAGA	4 cut(s)	198, 340, 406, 676
MhlI	GDGCHC	3 cut(s)	539, 777, 1151
MlsI	TGGCCA	2 cut(s)	419, 434
MluCI	AATT	3 cut(s)	588, 895, 963
MluNI	TGGCCA	2 cut(s)	419, 434
MlyI	GAGTC	2 cut(s)	498, 1208
MmeI	TCCRAC	1 cut(s)	565
Mox20I	TGGCCA	2 cut(s)	419, 434
MscI	TGGCCA	2 cut(s)	419, 434
MseI	TTAA	3 cut(s)	104, 906, 1001
MslI	CAYNNNNRTG	1 cut(s)	1081
Msp20I	TGGCCA	2 cut(s)	419, 434
MspA1I	CMGCKG	2 cut(s)	972, 1118
MspI	CCGG	3 cut(s)	624, 778, 1206
MspR9I	CCNGG	3 cut(s)	451, 1068, 1207
MvaI	CCWGG	2 cut(s)	451, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	130, 491, 981
NciI	CCSGG	1 cut(s)	1207
NcoI	CCATGG	2 cut(s)	947, 1216
NdeII	GATC	4 cut(s)	90, 739, 783, 1038
NlaIII	CATG	9 cut(s)	231, 411, 424, 535, 569, 867, 951, 1045, 1220
NlaIV	GGNNCC	3 cut(s)	370, 557, 673
NmuCI	GTSAC	1 cut(s)	730
PaeR7I	CTCGAG	1 cut(s)	40
PasI	CCCWGGG	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	803, 995
PflMI	CCANNNNNTGG	1 cut(s)	156
PkrI	GCNGC	8 cut(s)	7, 457, 840, 928, 974, 1114, 1117, 1135
PleI	GAGTC	2 cut(s)	498, 1207
PpsI	GAGTC	2 cut(s)	498, 1207
PshAI	GACNNNNGTC	1 cut(s)	1028
Psp124BI	GAGCTC	2 cut(s)	777, 1151
Psp6I	CCWGG	2 cut(s)	449, 1066
PspFI	CCCAGC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	449, 1066
PspN4I	GGNNCC	3 cut(s)	370, 557, 673
PspPI	GGNCC	3 cut(s)	520, 671, 1064
PstI	CTGCAG	2 cut(s)	840, 1117
PvuII	CAGCTG	1 cut(s)	972
RsaI	GTAC	3 cut(s)	30, 244, 1122
RsaNI	GTAC	3 cut(s)	29, 243, 1121
RseI	CAYNNNNRTG	1 cut(s)	1081
SacI	GAGCTC	2 cut(s)	777, 1151
SaqAI	TTAA	3 cut(s)	104, 906, 1001
SatI	GCNGC	8 cut(s)	6, 456, 839, 927, 973, 1113, 1116, 1134
Sau3AI	GATC	4 cut(s)	90, 739, 783, 1038
Sau96I	GGNCC	3 cut(s)	520, 671, 1064
SchI	GAGTC	2 cut(s)	498, 1208
ScrFI	CCNGG	3 cut(s)	451, 1068, 1207
SduI	GDGCHC	3 cut(s)	539, 777, 1151
SfcI	CTRYAG	2 cut(s)	836, 1113
Sfr274I	CTCGAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	671
SlaI	CTCGAG	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	1081
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	3 cut(s)	588, 895, 963
SsiI	CCGC	2 cut(s)	5, 1118
SspMI	CTAG	3 cut(s)	126, 299, 576
SstI	GAGCTC	2 cut(s)	777, 1151
StyD4I	CCNGG	3 cut(s)	449, 1066, 1205
StyI	CCWWGG	3 cut(s)	694, 947, 1216
TaaI	ACNGT	1 cut(s)	730
TaqI	TCGA	1 cut(s)	41
TasI	AATT	3 cut(s)	588, 895, 963
TatI	WGTACW	2 cut(s)	28, 242
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	803, 995
Tru1I	TTAA	3 cut(s)	104, 906, 1001
Tru9I	TTAA	3 cut(s)	104, 906, 1001
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	7 cut(s)	455, 838, 926, 972, 1112, 1115, 1133
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	4 cut(s)	582, 596, 748, 1048
Van91I	CCANNNNNTGG	1 cut(s)	156
VpaK11BI	GGWCC	1 cut(s)	671
XapI	RAATTY	1 cut(s)	588
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 427
XhoI	CTCGAG	1 cut(s)	40
XmiI	GTMKAC	1 cut(s)	378
XspI	CTAG	3 cut(s)	126, 299, 576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.