Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010728

Physical Location & Seq

Genomic Coordinates Reverse (-)

23516338 .. 23518944

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1146900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTATATTGAAAAAAATTATTTTTATCGGTTGTCATCCTTTCTATGGGGATACATATTCTCATCAGTGATTGGAGGTGCCTTGGTAGACAGATACGGAGGAAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCAACTCTCCTCACTCCATGGGCTGCCAACCATTCCACCACCAGCCTCTTGGCCGTTCGCGCCTTCTTTGGACTCTCTGAAGGTGTAGCCCTCCCGTCCATGAGCACCCTCTTATCAAGGTGGTTTCCGAGCCATGAAAGAGCAAGTGCAGTTGGAATCTCTATGGCTGGATTTCACCTCGGCAATGTTGTTGGCTTACTACTAACTCCAGTTATGTTGTCAACAATGGGACTTTCCGGTCCCTTTATTCTCTTCTCCTCCATTGGACTGCTTTGGCTGACAATATGGGCATACACAGTCACAAATGATCCAAGTGAGAGTCGTTACATCAGCAACTCGGAGATCCGATTGATCCAAGCTGGTAAATCTGATTCTCCAAAAAAAGGTGGAAAGCTCCCATCTATGCGGCTCCTGTTTTCAAAATTTCCAACTTGGGCCATTATTTGTGCCAACATAACTAATAATTGGGGGTACTTTGTTCTGCTCTCATGGATGCCGGTTTATTTTAAGACGGTATTTGGTGTAAACTTGAAGCAAGCTGCATGGTTTAGTGCTGTTCCATGGGGATCAATGGCAATTTCCAGTTACATTGCTGGTGCAGCATCGGATTCATTAATCAAGGCTGGCTACTCGTTGACTACAGTTCGAAAGATCATGCAGTCTATTGGTTTCATCGGGCCTGGAGTGTCATTGCTTGGCCTAAACTATGCCAAAACACCCGAAGCTGCAGCGGTACTCCTCACAGCAGCCTTGTGTTTGAGCTCTTTCAGTCAAGCCGGCTTTCTCCTTAATATCCAGGATATAGCGCCACAATCCGCTGGATTTCTCCATGGGATTACAAATTCAGCCGGGACAGTGGCGGCGATAATCAGCACGATAGGAACTGGCTATTTTGTACAATGGTTAGGATCGTTTCAGGCATTCCTAACGGTCACTGCAGGGCTATATTTCGCGACGACAATCTTTTGGAACCTATTTGCTACTGGAGAGCGCGTCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0009536 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0098656

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

381

Amino Acids

41.12

Weight (kDa)

9.67

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	11 - 85	5.9e-06	Sugar (and other) transporter
MFS_1	PF07690	12 - 338	1.8e-43	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38060 AT2G38060
fragaria_vesca	FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica	MD04G1146900.v1.1
prunus_persica	Prupe.6G270700_v2.0.a1
pyrus_communis	pycom04g13270
rosa_chinensis	RchiOBHm_Chr3g0463851
rosa_laevigata	RLG00000024750
rosa_multiflora	Rmu_sc0004796.1_g000002
rosa_roxburghii	Rroxscaffold_6G00416250
rosa_rugosa	Rorug03G0068400 Rorug03G0068500
rosa_samantha	Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana	Rw3G010600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	378
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	3 cut(s)	201, 1094, 1134
AciI	CCGC	4 cut(s)	547, 872, 957, 1001
AclWI	GGATC	5 cut(s)	443, 478, 487, 715, 1057
AcoI	YGGCCR	2 cut(s)	126, 192
AcsI	RAATTY	2 cut(s)	563, 982
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	614, 876, 1038
AfiI	CCNNNNNNNGG	2 cut(s)	45, 524
AgsI	TTSAA	3 cut(s)	11, 561, 673
AjnI	CCWGG	2 cut(s)	820, 936
AluBI	AGCT	5 cut(s)	500, 535, 680, 866, 903
AluI	AGCT	5 cut(s)	500, 535, 680, 866, 903
Alw21I	GWGCWC	2 cut(s)	248, 905
AlwI	GGATC	5 cut(s)	443, 478, 487, 715, 1057
AoxI	GGCC	5 cut(s)	126, 192, 576, 818, 838
ApeKI	GCWGC	6 cut(s)	164, 680, 740, 866, 869, 887
ApoI	RAATTY	2 cut(s)	563, 982
AseI	ATTAAT	1 cut(s)	755
AspLEI	GCGC	3 cut(s)	203, 949, 1134
AspS9I	GGNCC	3 cut(s)	380, 576, 818
AsuC2I	CCSGG	1 cut(s)	991
AsuHPI	GGTGA	1 cut(s)	308
AsuII	TTCGAA	1 cut(s)	787
AvaII	GGWCC	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	1129
Bbv12I	GWGCWC	2 cut(s)	248, 905
BbvI	GCAGC	6 cut(s)	151, 667, 752, 853, 881, 899
BccI	CCATC	2 cut(s)	106, 547
BceAI	ACGGC	1 cut(s)	179
BciT130I	CCWGG	2 cut(s)	822, 938
BciVI	GTATCC	1 cut(s)	44
BcnI	CCSGG	1 cut(s)	991
BfaI	CTAG	1 cut(s)	1141
BfmI	CTRYAG	3 cut(s)	780, 867, 1077
BfoI	RGCGCY	1 cut(s)	950
BfuI	GTATCC	1 cut(s)	44
BisI	GCNGC	8 cut(s)	165, 548, 681, 741, 867, 870, 888, 1002
BlsI	GCNGC	8 cut(s)	166, 549, 682, 742, 868, 871, 889, 1003
Bme1390I	CCNGG	3 cut(s)	822, 938, 991
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	3 cut(s)	380, 576, 818
BmiI	GGNNCC	4 cut(s)	79, 382, 551, 1112
BmrFI	CCNGG	3 cut(s)	822, 938, 991
BmsI	GCATC	2 cut(s)	624, 752
BpiI	GAAGAC	1 cut(s)	1129
BpmI	CTGGAG	2 cut(s)	333, 843
Bpu14I	TTCGAA	1 cut(s)	787
BpuMI	CCSGG	1 cut(s)	991
BsaJI	CCNNGG	5 cut(s)	81, 158, 319, 701, 970
BsaWI	WCCGGW	1 cut(s)	377
BsaXI	ACNNNNNCTCC	1 cut(s)	1119
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 524
Bse118I	RCCGGY	2 cut(s)	637, 917
Bse1I	ACTGG	4 cut(s)	350, 723, 1030, 1129
Bse3DI	GCAATG	3 cut(s)	331, 729, 830
BseBI	CCWGG	2 cut(s)	822, 938
BseDI	CCNNGG	5 cut(s)	81, 158, 319, 701, 970
BseGI	GGATG	2 cut(s)	35, 639
BseLI	CCNNNNNNNGG	2 cut(s)	45, 524
BseMI	GCAATG	3 cut(s)	331, 729, 830
BseNI	ACTGG	4 cut(s)	350, 723, 1030, 1129
BseRI	GAGGAG	3 cut(s)	140, 388, 869
BseXI	GCAGC	6 cut(s)	151, 667, 752, 853, 881, 899
BsgI	GTGCAG	2 cut(s)	309, 759
Bsh1236I	CGCG	3 cut(s)	201, 1094, 1134
BshFI	GGCC	5 cut(s)	128, 194, 578, 820, 840
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	248, 905
BsiSI	CCGG	4 cut(s)	378, 638, 918, 990
BslFI	GGGAC	3 cut(s)	366, 384, 1006
BslI	CCNNNNNNNGG	2 cut(s)	45, 524
BsmFI	GGGAC	3 cut(s)	366, 384, 1006
BsmI	GAATGC	1 cut(s)	1061
BsnI	GGCC	5 cut(s)	128, 194, 578, 820, 840
Bsp119I	TTCGAA	1 cut(s)	787
Bsp1286I	GDGCHC	2 cut(s)	248, 905
Bsp1407I	TGTACA	1 cut(s)	1036
Bsp143I	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
Bsp19I	CCATGG	3 cut(s)	158, 701, 970
Bsp68I	TCGCGA	1 cut(s)	1094
BspACI	CCGC	4 cut(s)	547, 872, 957, 1001
BspANI	GGCC	5 cut(s)	128, 194, 578, 820, 840
BspFNI	CGCG	3 cut(s)	201, 1094, 1134
BspLI	GGNNCC	4 cut(s)	79, 382, 551, 1112
BspMAI	CTGCAG	2 cut(s)	871, 1081
BspPI	GGATC	5 cut(s)	443, 478, 487, 715, 1057
BspT104I	TTCGAA	1 cut(s)	787
BspT107I	GGYRCC	1 cut(s)	77
BsrDI	GCAATG	3 cut(s)	331, 729, 830
BsrFI	RCCGGY	2 cut(s)	637, 917
BsrGI	TGTACA	1 cut(s)	1036
BsrI	ACTGG	4 cut(s)	350, 723, 1030, 1129
BssAI	RCCGGY	2 cut(s)	637, 917
BssECI	CCNNGG	5 cut(s)	81, 158, 319, 701, 970
BssMI	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
BssT1I	CCWWGG	4 cut(s)	81, 158, 701, 970
Bst2UI	CCWGG	2 cut(s)	822, 938
Bst4CI	ACNGT	5 cut(s)	439, 655, 784, 997, 1072
Bst6I	CTCTTC	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	1036
BstBI	TTCGAA	1 cut(s)	787
BstC8I	GCNNGC	3 cut(s)	678, 766, 919
BstDSI	CCRYGG	3 cut(s)	158, 701, 970
BstF5I	GGATG	2 cut(s)	35, 639
BstFNI	CGCG	3 cut(s)	201, 1094, 1134
BstH2I	RGCGCY	1 cut(s)	950
BstHHI	GCGC	3 cut(s)	203, 949, 1134
BstKTI	GATC	6 cut(s)	451, 486, 495, 710, 795, 1052
BstMBI	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 740
BstNI	CCWGG	2 cut(s)	822, 938
BstSCI	CCNGG	3 cut(s)	820, 936, 989
BstSFI	CTRYAG	3 cut(s)	780, 867, 1077
BstUI	CGCG	3 cut(s)	201, 1094, 1134
BstV1I	GCAGC	6 cut(s)	151, 667, 752, 853, 881, 899
BstV2I	GAAGAC	1 cut(s)	1129
BstX2I	RGATCY	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	483
BsuI	GTATCC	1 cut(s)	44
BsuRI	GGCC	5 cut(s)	128, 194, 578, 820, 840
BtgI	CCRYGG	3 cut(s)	158, 701, 970
BtsCI	GGATG	2 cut(s)	35, 639
BtsI	GCAGTG	1 cut(s)	1074
BtsIMutI	CAGTG	3 cut(s)	72, 1002, 1074
BtuMI	TCGCGA	1 cut(s)	1094
Cac8I	GCNNGC	3 cut(s)	678, 766, 919
CfoI	GCGC	3 cut(s)	203, 949, 1134
Cfr10I	RCCGGY	2 cut(s)	637, 917
Cfr13I	GGNCC	3 cut(s)	380, 576, 818
CseI	GACGC	1 cut(s)	1123
Csp6I	GTAC	3 cut(s)	613, 875, 1037
CviQI	GTAC	3 cut(s)	613, 875, 1037
DpnI	GATC	6 cut(s)	450, 485, 494, 709, 794, 1051
DpnII	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
DrdI	GACNNNNNNGTC	1 cut(s)	378
DseDI	GACNNNNNNGTC	1 cut(s)	378
EaeI	YGGCCR	2 cut(s)	126, 192
Eam1104I	CTCTTC	1 cut(s)	398
EarI	CTCTTC	1 cut(s)	398
Ecl136II	GAGCTC	1 cut(s)	903
Eco130I	CCWWGG	4 cut(s)	81, 158, 701, 970
Eco24I	GRGCYC	1 cut(s)	905
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	903
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	903
EcoRII	CCWGG	2 cut(s)	820, 936
EcoT14I	CCWWGG	4 cut(s)	81, 158, 701, 970
EcoT38I	GRGCYC	1 cut(s)	905
ErhI	CCWWGG	4 cut(s)	81, 158, 701, 970
FaqI	GGGAC	3 cut(s)	366, 384, 1006
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	165, 548, 681, 741, 867, 870, 888, 1002
FokI	GGATG	2 cut(s)	22, 646
FriOI	GRGCYC	1 cut(s)	905
Fsp4HI	GCNGC	8 cut(s)	165, 548, 681, 741, 867, 870, 888, 1002
FspBI	CTAG	1 cut(s)	1141
GlaI	GCGC	3 cut(s)	202, 948, 1133
GluI	GCNGC	8 cut(s)	165, 548, 681, 741, 867, 870, 888, 1002
GsuI	CTGGAG	2 cut(s)	333, 843
HaeII	RGCGCY	1 cut(s)	950
HaeIII	GGCC	5 cut(s)	128, 194, 578, 820, 840
HapII	CCGG	4 cut(s)	378, 638, 918, 990
HgaI	GACGC	1 cut(s)	1123
HhaI	GCGC	3 cut(s)	203, 949, 1134
Hin6I	GCGC	3 cut(s)	201, 947, 1132
HinP1I	GCGC	3 cut(s)	201, 947, 1132
HincII	GTYRAC	2 cut(s)	363, 777
HindII	GTYRAC	2 cut(s)	363, 777
HinfI	GANTC	5 cut(s)	213, 297, 460, 512, 749
HpaII	CCGG	4 cut(s)	378, 638, 918, 990
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	4 cut(s)	88, 363, 667, 777
Hpy188I	TCNGA	6 cut(s)	220, 270, 481, 488, 511, 748
Hpy188III	TCNNGA	1 cut(s)	1093
Hpy8I	GTNNAC	4 cut(s)	88, 363, 667, 777
Hpy99I	CGWCG	1 cut(s)	1099
HpyAV	CCTTC	2 cut(s)	214, 215
HpyCH4III	ACNGT	5 cut(s)	439, 655, 784, 997, 1072
HpyCH4V	TGCA	6 cut(s)	290, 683, 740, 799, 869, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 740
HspAI	GCGC	3 cut(s)	201, 947, 1132
KroI	GCCGGC	1 cut(s)	917
KroNI	GCCGGC	1 cut(s)	919
Kzo9I	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
LmnI	GCTCC	2 cut(s)	540, 555
Lsp1109I	GCAGC	6 cut(s)	151, 667, 752, 853, 881, 899
LweI	GCATC	2 cut(s)	624, 752
MaeI	CTAG	1 cut(s)	1141
MaeIII	GTNAC	4 cut(s)	439, 464, 725, 1072
MalI	GATC	6 cut(s)	450, 485, 494, 709, 794, 1051
MboI	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
MboII	GAAGA	2 cut(s)	385, 1129
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	2 cut(s)	248, 905
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	5 cut(s)	16, 563, 604, 717, 982
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	207, 469
MmeI	TCCRAC	2 cut(s)	274, 593
MnlI	CCTC	9 cut(s)	68, 92, 161, 197, 242, 260, 329, 409, 890
Mox20I	TGGCCA	1 cut(s)	128
MroNI	GCCGGC	1 cut(s)	917
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	648, 755, 930
Msp20I	TGGCCA	1 cut(s)	128
MspA1I	CMGCKG	2 cut(s)	872, 959
MspI	CCGG	4 cut(s)	378, 638, 918, 990
MspR9I	CCNGG	3 cut(s)	822, 938, 991
Mva1269I	GAATGC	1 cut(s)	1061
MvaI	CCWGG	2 cut(s)	822, 938
MvnI	CGCG	3 cut(s)	201, 1094, 1134
MwoI	GCNNNNNNNGC	2 cut(s)	200, 740
NaeI	GCCGGC	1 cut(s)	919
NciI	CCSGG	1 cut(s)	991
NcoI	CCATGG	3 cut(s)	158, 701, 970
NdeII	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
NgoMIV	GCCGGC	1 cut(s)	917
NlaIV	GGNNCC	4 cut(s)	79, 382, 551, 1112
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	2 cut(s)	439, 1072
NruI	TCGCGA	1 cut(s)	1094
NspV	TTCGAA	1 cut(s)	787
PctI	GAATGC	1 cut(s)	1061
PdiI	GCCGGC	1 cut(s)	919
PfeI	GAWTC	3 cut(s)	297, 512, 749
PfoI	TCCNGGA	1 cut(s)	936
PkrI	GCNGC	8 cut(s)	166, 549, 682, 742, 868, 871, 889, 1003
PleI	GAGTC	2 cut(s)	207, 468
PpsI	GAGTC	2 cut(s)	207, 468
PshBI	ATTAAT	1 cut(s)	755
Psp124BI	GAGCTC	1 cut(s)	905
Psp6I	CCWGG	2 cut(s)	820, 936
PspGI	CCWGG	2 cut(s)	820, 936
PspN4I	GGNNCC	4 cut(s)	79, 382, 551, 1112
PspPI	GGNCC	3 cut(s)	380, 576, 818
PstI	CTGCAG	2 cut(s)	871, 1081
PsuI	RGATCY	1 cut(s)	483
RruI	TCGCGA	1 cut(s)	1094
RsaI	GTAC	3 cut(s)	614, 876, 1038
RsaNI	GTAC	3 cut(s)	613, 875, 1037
SacI	GAGCTC	1 cut(s)	905
SaqAI	TTAA	3 cut(s)	648, 755, 930
SatI	GCNGC	8 cut(s)	165, 548, 681, 741, 867, 870, 888, 1002
Sau3AI	GATC	6 cut(s)	448, 483, 492, 707, 792, 1049
Sau96I	GGNCC	3 cut(s)	380, 576, 818
SchI	GAGTC	2 cut(s)	207, 469
ScrFI	CCNGG	3 cut(s)	822, 938, 991
SduI	GDGCHC	2 cut(s)	248, 905
SfaNI	GCATC	2 cut(s)	624, 752
SfcI	CTRYAG	3 cut(s)	780, 867, 1077
SfuI	TTCGAA	1 cut(s)	787
SinI	GGWCC	1 cut(s)	380
Sse9I	AATT	5 cut(s)	16, 563, 604, 717, 982
SsiI	CCGC	4 cut(s)	547, 872, 957, 1001
SspMI	CTAG	1 cut(s)	1141
SstI	GAGCTC	1 cut(s)	905
StyD4I	CCNGG	3 cut(s)	820, 936, 989
StyI	CCWWGG	4 cut(s)	81, 158, 701, 970
TaaI	ACNGT	5 cut(s)	439, 655, 784, 997, 1072
TaqI	TCGA	1 cut(s)	787
TasI	AATT	5 cut(s)	16, 563, 604, 717, 982
TatI	WGTACW	1 cut(s)	1036
TauI	GCSGC	2 cut(s)	550, 1004
TfiI	GAWTC	3 cut(s)	297, 512, 749
Tru1I	TTAA	3 cut(s)	648, 755, 930
Tru9I	TTAA	3 cut(s)	648, 755, 930
TscAI	CASTG	3 cut(s)	72, 1002, 1081
TseFI	GTSAC	2 cut(s)	439, 1072
TseI	GCWGC	6 cut(s)	164, 680, 740, 866, 869, 887
Tsp45I	GTSAC	2 cut(s)	439, 1072
TspDTI	ATGAA	3 cut(s)	291, 741, 802
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	3 cut(s)	72, 1002, 1081
VpaK11BI	GGWCC	1 cut(s)	380
VspI	ATTAAT	1 cut(s)	755
XapI	RAATTY	2 cut(s)	563, 982
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 187
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	1 cut(s)	1141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.