Rorug03G0068500

anion transporter 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010728
Physical Location & Seq
Forward (+)
5272447 .. 5275549
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0068500.1

Sequence Viewer

Length: 345 bp
ATGGTTGTTCCTCCTCCAGTCAGGCCACCTACTATTACGAAGTTTCTAAAGCCTTATGTCCTGAAAATGCACTTTACAAATAAATTTGTAACTGCACAGGTCATCCACTCGCCAACTGCCACTGTAGCCTCTTCCGCAAGCTCTCAGGAAAAGGCCTTGAGAGAAAGCTTGGAATCGCATCGGGATGTTGCTGCTGCTGCAAAGATTGGGAAGATATTAGGTGAGCGCCTGCTGCTCAAGAACATCCCTGCTGTCGCAGTCCACTTGAAGAGAGAACAGAAATATCATGGTAAGGTTAAAGCTGTCATAGATAATGTGGTGGAAGCAGGTGTTAAGCTACTTTGA

Protein Analysis

114

Amino Acids

12.47

Weight (kDa)

10.17

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L18p PF00861 20 - 113 2.6e-13 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38060 AT2G38060
fragaria_vesca FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica MD04G1146900.v1.1
prunus_persica Prupe.6G270700_v2.0.a1
pyrus_communis pycom04g13270
rosa_chinensis RchiOBHm_Chr3g0463851
rosa_laevigata RLG00000024750
rosa_multiflora Rmu_sc0004796.1_g000002
rosa_roxburghii Rroxscaffold_6G00416250
rosa_rugosa Rorug03G0068400 Rorug03G0068500
rosa_samantha Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana Rw3G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 317
Acc36I ACCTGC 1 cut(s) 317
AciI CCGC 1 cut(s) 135
AcsI RAATTY 1 cut(s) 83
AgsI TTSAA 1 cut(s) 268
AluBI AGCT 4 cut(s) 141, 168, 302, 337
AluI AGCT 4 cut(s) 141, 168, 302, 337
AoxI GGCC 2 cut(s) 23, 153
ApeKI GCWGC 4 cut(s) 191, 194, 197, 232
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 228
AsuHPI GGTGA 1 cut(s) 233
BbvI GCAGC 4 cut(s) 178, 181, 184, 219
BfmI CTRYAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 317
BisI GCNGC 4 cut(s) 192, 195, 198, 233
BlsI GCNGC 4 cut(s) 193, 196, 199, 234
BmsI GCATC 1 cut(s) 187
BpuEI CTTGAG 2 cut(s) 178, 221
Bse1I ACTGG 1 cut(s) 17
BseGI GGATG 3 cut(s) 102, 190, 243
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 17
BseXI GCAGC 4 cut(s) 178, 181, 184, 219
BsgI GTGCAG 1 cut(s) 78
BshFI GGCC 2 cut(s) 25, 155
BsnI GGCC 2 cut(s) 25, 155
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 25, 155
BspCNI CTCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 136, 263
BstC8I GCNNGC 2 cut(s) 139, 230
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 3 cut(s) 102, 190, 243
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstMWI GCNNNNNNNGC 4 cut(s) 125, 134, 197, 232
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 178, 181, 184, 219
BsuRI GGCC 2 cut(s) 25, 155
BtsCI GGATG 3 cut(s) 102, 190, 243
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 317
Cac8I GCNNGC 2 cut(s) 139, 230
CfoI GCGC 1 cut(s) 228
CviAII CATG 1 cut(s) 287
CviJI RGCY 8 cut(s) 25, 52, 128, 141, 155, 168, 302, 337
CviKI_1 RGCY 8 cut(s) 25, 52, 128, 141, 155, 168, 302, 337
DdeI CTNAG 1 cut(s) 144
Eam1104I CTCTTC 2 cut(s) 136, 263
EarI CTCTTC 2 cut(s) 136, 263
Eco147I AGGCCT 1 cut(s) 155
FaeI CATG 1 cut(s) 290
FaiI YATR 3 cut(s) 57, 288, 308
FatI CATG 1 cut(s) 286
Fnu4HI GCNGC 4 cut(s) 192, 195, 198, 233
FokI GGATG 3 cut(s) 89, 197, 230
Fsp4HI GCNGC 4 cut(s) 192, 195, 198, 233
GlaI GCGC 1 cut(s) 227
GluI GCNGC 4 cut(s) 192, 195, 198, 233
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 2 cut(s) 25, 155
HhaI GCGC 1 cut(s) 228
Hin1II CATG 1 cut(s) 290
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 233
Hpy166II GTNNAC 1 cut(s) 262
Hpy188III TCNNGA 4 cut(s) 61, 146, 182, 238
Hpy8I GTNNAC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 3 cut(s) 70, 95, 200
HpyF10VI GCNNNNNNNGC 4 cut(s) 125, 134, 197, 232
HpyF3I CTNAG 1 cut(s) 144
Hsp92II CATG 1 cut(s) 290
HspAI GCGC 1 cut(s) 226
LpnPI CCDG 8 cut(s) 7, 30, 74, 83, 131, 242, 261, 312
Lsp1109I GCAGC 4 cut(s) 178, 181, 184, 219
LweI GCATC 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 88
MboII GAAGA 3 cut(s) 123, 223, 280
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 21, 24, 139
MseI TTAA 2 cut(s) 297, 333
MslI CAYNNNNRTG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 125, 134, 197, 232
NlaIII CATG 1 cut(s) 290
PaqCI CACCTGC 1 cut(s) 317
PceI AGGCCT 1 cut(s) 155
PfeI GAWTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 193, 196, 199, 234
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 2 cut(s) 297, 333
SatI GCNGC 4 cut(s) 192, 195, 198, 233
SetI ASST 9 cut(s) 31, 102, 143, 170, 223, 297, 304, 331, 339
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 2 cut(s) 157, 236
SmoI CTYRAG 2 cut(s) 157, 236
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 155
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 83
TfiI GAWTC 1 cut(s) 173
Tru1I TTAA 2 cut(s) 297, 333
Tru9I TTAA 2 cut(s) 297, 333
TscAI CASTG 1 cut(s) 127
TseI GCWGC 4 cut(s) 191, 194, 197, 232
TspRI CASTG 1 cut(s) 127
XapI RAATTY 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.