Rh3AG125600

anion transporter 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0010728
Physical Location & Seq
Forward (+)
10841981 .. 10846296
4316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG125600.1

Sequence Viewer

Length: 1197 bp
ATGGCGGCTGTAACTCCTGCCAAATCTGTACTACATTCCTCGAGACCTAACCCACACCCTTCTCGCTTCTCAGCCTCCCCATCGACTTTGATCAATGCAAGAACAACTCAGTTGGGGCTTAGGCCTAGATTGCTCCACCAAGCAAAACCCACAAAATGGGTGGAGGGTTTTGATTATGGTTTAGGAAGAAACAGGGGAGCAAGAACAGAGAGGCTTCAGAGGAAACCATGTGTGGTGACGTGTACAGCAGAGGGCATAGAGGGGGGGATGATGATTGGGAGAAGAGAGAGGGTTTCTCTAGTGAGAGTGCCAGAGAGGTTCAAGGTTGTGGCTTTAGTGGCTTGTGTGATGTGTCTTTGTAATGCAGACAGAGTAGTCATGTCTGTGGCCGTTGTTCCACTTGCAGCTCAAAAGGGTTGGACCAGTTCTTTCTTGGGTGTTGTTCAGTCATCCTTTCTATGGGGATATATCTTCTCATCAGTAATCGGAGGAGCCTTAGTAGACAGATATGGAGGGAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCCACCCTCCTCACTCCCTGGGCTGCCAACCATTCTACAACCAGCCTATTGGCTGTTCGTGCCTTCTTTGGACTCGCTGAAGGTGTGGCCCTGCCTTCCATGAGCACCCTCTTATCAAGGTGGTTCCCGACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGCAATGTTACCGGCTTACTACTAACTCCAGTTATGATGTCATCAATGGGATTTTCTGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTGCTCTGGTTGACAATATGGACATATACAGTCACAAATGATCCAAGAGAGAGTGATTTCATTAGCAAATCAGAGCTCCGGTTGATCCAAGCTGGAAAATCTGATTCTCCAGTGAGCAACGACAAGTTCCCACCTCTGCGGCTCCTACTATCAAAACTACCAACATGGAGTATTATATTTGCCAACATAACTAATAATTGGGTGAGTTTGCTTACTAGTTGCTACAAATATATACTAATAGTGATTTTGTTTAGTGAAATCTTTTATCTGGTGGTGGTCCTTAATTCCCTTTTTCTGTGTTTTTGGTATGGTCCATCATGTTGCAGGGATACTTTGTTCTGCTTTCTTGGATGCCTGTTTATTTCAAGACTGTAA

Protein Analysis

398

Amino Acids

43.88

Weight (kDa)

9.84

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 115 - 359 1.5e-36 Major Facilitator Superfamily
Sugar_tr PF00083 141 - 223 9.8e-07 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38060 AT2G38060
fragaria_vesca FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica MD04G1146900.v1.1
prunus_persica Prupe.6G270700_v2.0.a1
pyrus_communis pycom04g13270
rosa_chinensis RchiOBHm_Chr3g0463851
rosa_laevigata RLG00000024750
rosa_multiflora Rmu_sc0004796.1_g000002
rosa_roxburghii Rroxscaffold_6G00416250
rosa_rugosa Rorug03G0068400 Rorug03G0068500
rosa_samantha Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana Rw3G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 501
AciI CCGC 2 cut(s) 5, 961
AclWI GGATC 2 cut(s) 857, 901
AcoI YGGCCR 3 cut(s) 387, 540, 555
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 2 cut(s) 200, 654
AfaI GTAC 2 cut(s) 30, 244
AfiI CCNNNNNNNGG 2 cut(s) 156, 459
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 2 cut(s) 322, 1188
AhlI ACTAGT 1 cut(s) 1037
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 1 cut(s) 572
AloI GAACNNNNNNTCC 2 cut(s) 1142, 1174
AluBI AGCT 4 cut(s) 407, 698, 898, 914
AluI AGCT 4 cut(s) 407, 698, 898, 914
Alw21I GWGCWC 2 cut(s) 662, 900
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 857, 901
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 5 cut(s) 122, 387, 540, 555, 642
ApeKI GCWGC 2 cut(s) 404, 578
ApoI RAATTY 1 cut(s) 711
AspS9I GGNCC 5 cut(s) 420, 643, 794, 1099, 1133
AsuHPI GGTGA 2 cut(s) 247, 1036
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 4 cut(s) 420, 794, 1099, 1133
BalI TGGCCA 2 cut(s) 542, 557
BanII GRGCYC 1 cut(s) 900
Bbv12I GWGCWC 2 cut(s) 662, 900
BbvI GCAGC 2 cut(s) 416, 565
BccI CCATC 3 cut(s) 88, 520, 1144
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 1 cut(s) 1144
BclI TGATCA 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 37
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 4 cut(s) 126, 299, 699, 1038
BfuI GTATCC 1 cut(s) 1144
BisI GCNGC 4 cut(s) 6, 405, 579, 962
BlsI GCNGC 4 cut(s) 7, 406, 580, 963
Bme1390I CCNGG 1 cut(s) 574
Bme18I GGWCC 4 cut(s) 420, 794, 1099, 1133
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 5 cut(s) 420, 643, 794, 1099, 1133
BmiI GGNNCC 4 cut(s) 493, 680, 796, 965
BmrFI CCNGG 1 cut(s) 574
BmsI GCATC 1 cut(s) 1163
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 2 cut(s) 747, 915
Bpu10I CCTNAGC 1 cut(s) 119
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 3 cut(s) 572, 573, 817
BsaWI WCCGGW 1 cut(s) 900
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 459
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 3 cut(s) 423, 764, 932
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 3 cut(s) 572, 573, 817
BseGI GGATG 3 cut(s) 273, 449, 1178
BseLI CCNNNNNNNGG 2 cut(s) 156, 459
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 84, 122
BseNI ACTGG 3 cut(s) 423, 764, 932
BseRI GAGGAG 3 cut(s) 504, 554, 802
BseXI GCAGC 2 cut(s) 416, 565
BseYI CCCAGC 1 cut(s) 722
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 5 cut(s) 124, 389, 542, 557, 644
BsiHKAI GWGCWC 2 cut(s) 662, 900
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 2 cut(s) 747, 901
BslFI GGGAC 1 cut(s) 780
BslI CCNNNNNNNGG 2 cut(s) 156, 459
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 780
BsnI GGCC 5 cut(s) 124, 389, 542, 557, 644
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 662, 900
Bsp1407I TGTACA 1 cut(s) 242
Bsp143I GATC 3 cut(s) 90, 862, 906
BspACI CCGC 2 cut(s) 5, 961
BspANI GGCC 5 cut(s) 124, 389, 542, 557, 644
BspCNI CTCAG 2 cut(s) 83, 121
BspLI GGNNCC 4 cut(s) 493, 680, 796, 965
BspPI GGATC 2 cut(s) 857, 901
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 242
BsrI ACTGG 3 cut(s) 423, 764, 932
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 572, 573, 817
BssMI GATC 3 cut(s) 90, 862, 906
BssT1I CCWWGG 1 cut(s) 817
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 853, 1194
Bst6I CTCTTC 3 cut(s) 277, 512, 812
BstAUI TGTACA 1 cut(s) 242
BstDEI CTNAG 4 cut(s) 70, 108, 119, 496
BstF5I GGATG 3 cut(s) 273, 449, 1178
BstKTI GATC 3 cut(s) 93, 865, 909
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 3 cut(s) 90, 862, 906
BstMWI GCNNNNNNNGC 3 cut(s) 130, 338, 614
BstNI CCWGG 1 cut(s) 574
BstSCI CCNGG 1 cut(s) 572
BstV1I GCAGC 2 cut(s) 416, 565
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 1144
BsuRI GGCC 5 cut(s) 124, 389, 542, 557, 644
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 273, 449, 1178
BtsIMutI CAGTG 1 cut(s) 939
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 5 cut(s) 420, 643, 794, 1099, 1133
Csp6I GTAC 2 cut(s) 29, 243
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 8 cut(s) 228, 379, 531, 544, 655, 689, 987, 1140
CviQI GTAC 2 cut(s) 29, 243
DdeI CTNAG 4 cut(s) 70, 108, 119, 496
DpnI GATC 3 cut(s) 92, 864, 908
DpnII GATC 3 cut(s) 90, 862, 906
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 387, 540, 555
Eam1104I CTCTTC 3 cut(s) 277, 512, 812
EarI CTCTTC 3 cut(s) 277, 512, 812
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 817
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 4 cut(s) 420, 794, 1099, 1133
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 2 cut(s) 200, 654
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 898
EcoRII CCWGG 1 cut(s) 572
EcoT14I CCWWGG 1 cut(s) 817
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 817
FaeI CATG 8 cut(s) 231, 382, 534, 547, 658, 692, 990, 1143
FaqI GGGAC 1 cut(s) 780
FatI CATG 8 cut(s) 227, 378, 530, 543, 654, 688, 986, 1139
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 4 cut(s) 6, 405, 579, 962
FokI GGATG 3 cut(s) 280, 436, 1185
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 4 cut(s) 6, 405, 579, 962
FspBI CTAG 4 cut(s) 126, 299, 699, 1038
GluI GCNGC 4 cut(s) 6, 405, 579, 962
GsaI CCCAGC 1 cut(s) 726
GsuI CTGGAG 2 cut(s) 747, 915
HaeIII GGCC 5 cut(s) 124, 389, 542, 557, 644
HapII CCGG 2 cut(s) 747, 901
Hin1II CATG 8 cut(s) 231, 382, 534, 547, 658, 692, 990, 1143
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HinfI GANTC 2 cut(s) 627, 926
HpaII CCGG 2 cut(s) 747, 901
HphI GGTGA 2 cut(s) 247, 1036
Hpy166II GTNNAC 3 cut(s) 243, 502, 834
Hpy188I TCNGA 4 cut(s) 219, 488, 895, 925
Hpy188III TCNNGA 3 cut(s) 42, 682, 1188
Hpy8I GTNNAC 3 cut(s) 243, 502, 834
HpyAV CCTTC 4 cut(s) 69, 628, 629, 660
HpyCH4III ACNGT 2 cut(s) 853, 1194
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 5 cut(s) 98, 365, 404, 704, 1146
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 338, 614
HpyF3I CTNAG 4 cut(s) 70, 108, 119, 496
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 8 cut(s) 231, 382, 534, 547, 658, 692, 990, 1143
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 90, 862, 906
LmnI GCTCC 5 cut(s) 138, 197, 491, 903, 969
Lsp1109I GCAGC 2 cut(s) 416, 565
LweI GCATC 1 cut(s) 1163
MaeI CTAG 4 cut(s) 126, 299, 699, 1038
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 4 cut(s) 10, 235, 742, 853
MalI GATC 3 cut(s) 92, 864, 908
MboI GATC 3 cut(s) 90, 862, 906
MboII GAAGA 5 cut(s) 198, 294, 463, 529, 799
MhlI GDGCHC 2 cut(s) 662, 900
MlsI TGGCCA 2 cut(s) 542, 557
MluCI AATT 3 cut(s) 711, 1018, 1105
MluNI TGGCCA 2 cut(s) 542, 557
MlyI GAGTC 1 cut(s) 621
MmeI TCCRAC 2 cut(s) 398, 688
Mox20I TGGCCA 2 cut(s) 542, 557
MscI TGGCCA 2 cut(s) 542, 557
MseI TTAA 1 cut(s) 1104
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 2 cut(s) 542, 557
MspI CCGG 2 cut(s) 747, 901
MspR9I CCNGG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 130, 338, 614
NdeII GATC 3 cut(s) 90, 862, 906
NlaIII CATG 8 cut(s) 231, 382, 534, 547, 658, 692, 990, 1143
NlaIV GGNNCC 4 cut(s) 493, 680, 796, 965
NmuCI GTSAC 2 cut(s) 235, 853
PaeR7I CTCGAG 1 cut(s) 40
PasI CCCWGGG 1 cut(s) 573
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 926
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 4 cut(s) 7, 406, 580, 963
PleI GAGTC 1 cut(s) 621
PpsI GAGTC 1 cut(s) 621
Psp124BI GAGCTC 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 572
PspFI CCCAGC 1 cut(s) 722
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 4 cut(s) 493, 680, 796, 965
PspPI GGNCC 5 cut(s) 420, 643, 794, 1099, 1133
RsaI GTAC 2 cut(s) 30, 244
RsaNI GTAC 2 cut(s) 29, 243
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 900
SaqAI TTAA 1 cut(s) 1104
SatI GCNGC 4 cut(s) 6, 405, 579, 962
Sau3AI GATC 3 cut(s) 90, 862, 906
Sau96I GGNCC 5 cut(s) 420, 643, 794, 1099, 1133
SchI GAGTC 1 cut(s) 621
ScrFI CCNGG 1 cut(s) 574
SduI GDGCHC 2 cut(s) 662, 900
SfaNI GCATC 1 cut(s) 1163
Sfr274I CTCGAG 1 cut(s) 40
SinI GGWCC 4 cut(s) 420, 794, 1099, 1133
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SpeI ACTAGT 1 cut(s) 1037
Sse9I AATT 3 cut(s) 711, 1018, 1105
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 5, 961
SspMI CTAG 4 cut(s) 126, 299, 699, 1038
SstI GAGCTC 1 cut(s) 900
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 572
StyI CCWWGG 1 cut(s) 817
TaaI ACNGT 2 cut(s) 853, 1194
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 41, 83
TasI AATT 3 cut(s) 711, 1018, 1105
TatI WGTACW 2 cut(s) 28, 242
TauI GCSGC 2 cut(s) 8, 964
TfiI GAWTC 1 cut(s) 926
Tru1I TTAA 1 cut(s) 1104
Tru9I TTAA 1 cut(s) 1104
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 2 cut(s) 235, 853
TseI GCWGC 2 cut(s) 404, 578
Tsp45I GTSAC 2 cut(s) 235, 853
TspDTI ATGAA 3 cut(s) 705, 719, 871
TspRI CASTG 1 cut(s) 939
Van91I CCANNNNNTGG 1 cut(s) 156
VpaK11BI GGWCC 4 cut(s) 420, 794, 1099, 1133
XapI RAATTY 1 cut(s) 711
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 430, 550
XhoI CTCGAG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 4 cut(s) 126, 299, 699, 1038
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.