Rorug03G0068400

anion transporter 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0010728
Physical Location & Seq
Reverse (-)
5268222 .. 5272303
4082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0068400.1

Sequence Viewer

Length: 1275 bp
ATGGCGACCAATATGGTGGTTGAGGACACGAGCTTCGAGGACGATCAGCTCGCCGCGATGACCACCGACGACATTGTCAGAGCCACTCGTCTTCTCGACAACGAGATCCGAATTCTCAAGGAAGAATTGCAAAGAACAAACTTGGAGCTGGATTCATACAAGGAAAAGATAAAGGAGAATCAGGAAAAGATTAAGCTCAATAAGCAGTTGCCCTACTTGGTCGGCAACATTGTTGAGATATTAGAAATGAATCCAGAAGATGAAGCTGAGGAAGATGGGGCAAACATTGATCTTGACTCACAAAGAAAGGGCAAGTGTGTTGTTTTGAAAACATCTACTCGTCAGACAATCTTTCTGCCTGTTGTTGGGCTTGTTGACCCTGATAAATTAAAGCCTGGAGATCTTGTTGGTGTGAACAAAGATAGTTACCTGATCTTGGATACTCTGCCATCCGAGTATGATTCCCGAGTGAAGGCTATGGAGGTTGATGAGAAACCAACTGAAGATTACAATGATATTGGAGGGCTAGAGAAACAGATTCAAGAACTGGTTGAGGCAATTGTTTTACCCATGACCCACAAGGAGCGTTTTCAGAAATTAGGGGTTCGCCCACCAAAGGGAGTGCTTTTGTATGGACCTCCTGGAACTGGTAAAACTTTAATGGCCCGGGCTTGTGCTGCACAAACGAATGCCACTTTTCTGAAACTTGCAGGCCCACAACTGGTTCAGATGTTCATTGGGGATGGAGCAAAACTTGTGCGCGATGCCTTTCAACTTGCAAAAGAGAAATCTCCTTGCATCATTTTCATAGATGAAATTGATGCAATTGGCACAAAGCGGTTTGATAGCGAAGTGAGTGGTGATAGGGAGGTGCAGCGTACAATGCTTGAATTGCTTAATCAACTTGATGGCTTTAGTAGCGATGACCGGATCAAGGTGATAGCAGCGACAAATCGTGCTGACATCCTTGATCCTGCTCTTATGCGTTCTGGTCGATTGGATCGTAAAATTGAGTTTCCACATCCCACTGAAGAAGCTAGAGCTCGGATTCTGCAGATTCACTCTAGGAAGATGAATGTTCACCCAGACGTCAATTTTGAAGAATTAGCTCGCTCTACTGATGATTTCAATGGTGCACAACTAAAAGCAGTTTGTGTGGAGGCAGGCATGCTGGCCCTTCGCCGTGATGCAACTGAGGTAAACCACGAAGATTTCAATGAAGGTATTATACAAGTTCAAGCAAAGAAGAAGGCTAGCCTCAACTATTATGCATAG

Protein Analysis

424

Amino Acids

47.6

Weight (kDa)

4.98

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 74 - 150 3.8e-10 Proteasomal ATPase OB C-terminal domain
AAA_5 PF07728 207 - 327 1.9e-06 AAA domain (dynein-related subfamily)
AAA PF00004 208 - 340 4.9e-44 ATPase family associated with various cellular activities (AAA)
nSTAND3 PF20720 208 - 355 6.5e-07 Novel STAND NTPase 3
AAA_lid_3 PF17862 363 - 407 5.2e-15 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38060 AT2G38060
fragaria_vesca FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica MD04G1146900.v1.1
prunus_persica Prupe.6G270700_v2.0.a1
pyrus_communis pycom04g13270
rosa_chinensis RchiOBHm_Chr3g0463851
rosa_laevigata RLG00000024750
rosa_multiflora Rmu_sc0004796.1_g000002
rosa_roxburghii Rroxscaffold_6G00416250
rosa_rugosa Rorug03G0068400 Rorug03G0068500
rosa_samantha Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana Rw3G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 74
AatII GACGTC 1 cut(s) 1092
AccII CGCG 2 cut(s) 56, 762
AciI CCGC 2 cut(s) 54, 838
AclWI GGATC 4 cut(s) 100, 938, 965, 1008
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 522, 1050
AcyI GRCGYC 1 cut(s) 1089
AfaI GTAC 1 cut(s) 880
AfiI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
AgsI TTSAA 8 cut(s) 328, 542, 773, 890, 1100, 1129, 1216, 1238
AjnI CCWGG 2 cut(s) 394, 640
AluBI AGCT 8 cut(s) 33, 49, 148, 196, 266, 1037, 1043, 1109
AluI AGCT 8 cut(s) 33, 49, 148, 196, 266, 1037, 1043, 1109
Alw21I GWGCWC 2 cut(s) 1045, 1138
Alw44I GTGCAC 1 cut(s) 1134
AlwI GGATC 4 cut(s) 100, 938, 965, 1008
Ama87I CYCGRG 2 cut(s) 465, 666
AoxI GGCC 3 cut(s) 663, 712, 1173
ApaLI GTGCAC 1 cut(s) 1134
ApeKI GCWGC 3 cut(s) 677, 874, 944
ApoI RAATTY 1 cut(s) 111
ArsI GACNNNNNNTTYG 4 cut(s) 17, 49, 1079, 1111
AspLEI GCGC 1 cut(s) 762
AspS9I GGNCC 4 cut(s) 635, 664, 713, 1174
AsuC2I CCSGG 2 cut(s) 667, 668
AsuHPI GGTGA 3 cut(s) 872, 949, 1073
AsuNHI GCTAGC 1 cut(s) 1253
AvaI CYCGRG 2 cut(s) 465, 666
AvaII GGWCC 1 cut(s) 635
BaeGI GKGCMC 1 cut(s) 1138
BanII GRGCYC 1 cut(s) 1045
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
BauI CACGAG 1 cut(s) 28
BbsI GAAGAC 1 cut(s) 83
Bbv12I GWGCWC 2 cut(s) 1045, 1138
BbvCI CCTCAGC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 664, 886, 956
BccI CCATC 4 cut(s) 269, 457, 737, 902
BceAI ACGGC 1 cut(s) 1167
BciT130I CCWGG 2 cut(s) 396, 642
BciVI GTATCC 1 cut(s) 433
BcnI CCSGG 2 cut(s) 667, 668
BfaI CTAG 4 cut(s) 527, 1038, 1065, 1254
BfmI CTRYAG 1 cut(s) 1052
BfuI GTATCC 1 cut(s) 433
BglII AGATCT 1 cut(s) 400
BisI GCNGC 4 cut(s) 54, 678, 875, 945
BlsI GCNGC 4 cut(s) 55, 679, 876, 946
Bme1390I CCNGG 4 cut(s) 396, 642, 667, 668
Bme18I GGWCC 1 cut(s) 635
BmeT110I CYCGRG 2 cut(s) 465, 666
BmgT120I GGNCC 4 cut(s) 635, 664, 713, 1174
BmrFI CCNGG 4 cut(s) 396, 642, 667, 668
BmsI GCATC 4 cut(s) 754, 807, 811, 1177
BmtI GCTAGC 1 cut(s) 1257
BpiI GAAGAC 1 cut(s) 83
BpmI CTGGAG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 101
BpuMI CCSGG 2 cut(s) 667, 668
BsaHI GRCGYC 1 cut(s) 1089
BsaJI CCNNGG 1 cut(s) 666
BsaWI WCCGGW 1 cut(s) 927
BsaXI ACNNNNNCTCC 2 cut(s) 390, 420
Bsc4I CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
Bse1I ACTGG 3 cut(s) 552, 652, 726
BseBI CCWGG 2 cut(s) 396, 642
BseDI CCNNGG 1 cut(s) 666
BseGI GGATG 4 cut(s) 449, 748, 963, 1021
BseLI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
BseMII CTCAG 2 cut(s) 258, 1185
BseNI ACTGG 3 cut(s) 552, 652, 726
BseSI GKGCMC 1 cut(s) 1138
BseXI GCAGC 3 cut(s) 664, 886, 956
BsgI GTGCAG 2 cut(s) 663, 893
Bsh1236I CGCG 2 cut(s) 56, 762
BshFI GGCC 3 cut(s) 665, 714, 1175
BsiHKAI GWGCWC 2 cut(s) 1045, 1138
BsiHKCI CYCGRG 2 cut(s) 465, 666
BsiSI CCGG 2 cut(s) 667, 928
BslI CCNNNNNNNGG 8 cut(s) 365, 436, 472, 616, 617, 647, 721, 934
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 3 cut(s) 665, 714, 1175
BsoBI CYCGRG 2 cut(s) 465, 666
Bsp1286I GDGCHC 2 cut(s) 1045, 1138
Bsp143I GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
BspACI CCGC 2 cut(s) 54, 838
BspANI GGCC 3 cut(s) 665, 714, 1175
BspCNI CTCAG 2 cut(s) 259, 1186
BspFNI CGCG 2 cut(s) 56, 762
BspMAI CTGCAG 1 cut(s) 1056
BspOI GCTAGC 1 cut(s) 1257
BspPI GGATC 4 cut(s) 100, 938, 965, 1008
BsrI ACTGG 3 cut(s) 552, 652, 726
BssECI CCNNGG 1 cut(s) 666
BssMI GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
BssNI GRCGYC 1 cut(s) 1089
BssSI CACGAG 1 cut(s) 28
Bst2BI CACGAG 1 cut(s) 28
Bst2UI CCWGG 2 cut(s) 396, 642
BstACI GRCGYC 1 cut(s) 1089
BstC8I GCNNGC 7 cut(s) 51, 712, 1111, 1165, 1169, 1173, 1255
BstDEI CTNAG 2 cut(s) 267, 1194
BstF5I GGATG 4 cut(s) 449, 748, 963, 1021
BstFNI CGCG 2 cut(s) 56, 762
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 8 cut(s) 46, 108, 292, 403, 435, 933, 973, 1003
BstMBI GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
BstNI CCWGG 2 cut(s) 396, 642
BstNSI RCATGY 1 cut(s) 1171
BstSCI CCNGG 4 cut(s) 394, 640, 665, 666
BstSFI CTRYAG 1 cut(s) 1052
BstSLI GKGCMC 1 cut(s) 1138
BstUI CGCG 2 cut(s) 56, 762
BstV1I GCAGC 3 cut(s) 664, 886, 956
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 105, 400
BstXI CCANNNNNNTGG 1 cut(s) 16
BstYI RGATCY 2 cut(s) 105, 400
BsuI GTATCC 1 cut(s) 433
BsuRI GGCC 3 cut(s) 665, 714, 1175
BtgZI GCGATG 3 cut(s) 71, 777, 936
BtsCI GGATG 4 cut(s) 449, 748, 963, 1021
BtsIMutI CAGTG 1 cut(s) 1026
Cac8I GCNNGC 7 cut(s) 51, 712, 1111, 1165, 1169, 1173, 1255
CfoI GCGC 1 cut(s) 762
Cfr13I GGNCC 4 cut(s) 635, 664, 713, 1174
Cfr9I CCCGGG 1 cut(s) 666
Csp6I GTAC 1 cut(s) 879
CviAII CATG 2 cut(s) 571, 1168
CviQI GTAC 1 cut(s) 879
DdeI CTNAG 2 cut(s) 267, 1194
DpnI GATC 8 cut(s) 45, 107, 291, 402, 434, 932, 972, 1002
DpnII GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
DrdI GACNNNNNNGTC 1 cut(s) 74
DseDI GACNNNNNNGTC 1 cut(s) 74
Ecl136II GAGCTC 1 cut(s) 1043
Eco24I GRGCYC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 635
Eco53kI GAGCTC 1 cut(s) 1043
Eco57I CTGAAG 2 cut(s) 522, 1050
Eco88I CYCGRG 2 cut(s) 465, 666
EcoICRI GAGCTC 1 cut(s) 1043
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 394, 640
EcoT22I ATGCAT 1 cut(s) 1273
EcoT38I GRGCYC 1 cut(s) 1045
FaeI CATG 2 cut(s) 574, 1171
FatI CATG 2 cut(s) 570, 1167
Fnu4HI GCNGC 4 cut(s) 54, 678, 875, 945
FokI GGATG 4 cut(s) 436, 755, 950, 1008
FriOI GRGCYC 1 cut(s) 1045
Fsp4HI GCNGC 4 cut(s) 54, 678, 875, 945
FspBI CTAG 4 cut(s) 527, 1038, 1065, 1254
GlaI GCGC 1 cut(s) 761
GluI GCNGC 4 cut(s) 54, 678, 875, 945
GsuI CTGGAG 1 cut(s) 417
HaeIII GGCC 3 cut(s) 665, 714, 1175
HapII CCGG 2 cut(s) 667, 928
HhaI GCGC 1 cut(s) 762
Hin1I GRCGYC 1 cut(s) 1089
Hin1II CATG 2 cut(s) 574, 1171
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 8 cut(s) 152, 178, 250, 296, 461, 538, 1048, 1057
HpaII CCGG 2 cut(s) 667, 928
HphI GGTGA 3 cut(s) 872, 949, 1073
Hpy166II GTNNAC 5 cut(s) 376, 415, 1081, 1136, 1201
Hpy188I TCNGA 8 cut(s) 80, 110, 345, 454, 594, 702, 729, 1047
Hpy188III TCNNGA 6 cut(s) 95, 182, 254, 293, 465, 542
Hpy8I GTNNAC 5 cut(s) 376, 415, 1081, 1136, 1201
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 4 cut(s) 466, 1187, 1214, 1243
HpyCH4IV ACGT 1 cut(s) 1089
HpyF10VI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
HpyF3I CTNAG 2 cut(s) 267, 1194
HpySE526I ACGT 1 cut(s) 1089
Hsp92I GRCGYC 1 cut(s) 1089
Hsp92II CATG 2 cut(s) 574, 1171
HspAI GCGC 1 cut(s) 760
Kzo9I GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
LmnI GCTCC 3 cut(s) 145, 583, 746
Lsp1109I GCAGC 3 cut(s) 664, 886, 956
LweI GCATC 4 cut(s) 754, 807, 811, 1177
MaeI CTAG 4 cut(s) 527, 1038, 1065, 1254
MaeII ACGT 1 cut(s) 1089
MaeIII GTNAC 1 cut(s) 425
MalI GATC 8 cut(s) 45, 107, 291, 402, 434, 932, 972, 1002
MboI GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
MfeI CAATTG 2 cut(s) 558, 825
MflI RGATCY 2 cut(s) 105, 400
MhlI GDGCHC 2 cut(s) 1045, 1138
MlyI GAGTC 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 1273
MseI TTAA 4 cut(s) 192, 389, 659, 897
MspI CCGG 2 cut(s) 667, 928
MspR9I CCNGG 4 cut(s) 396, 642, 667, 668
MunI CAATTG 2 cut(s) 558, 825
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 2 cut(s) 396, 642
MvnI CGCG 2 cut(s) 56, 762
MwoI GCNNNNNNNGC 5 cut(s) 202, 677, 883, 892, 918
NciI CCSGG 2 cut(s) 667, 668
NdeII GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
NheI GCTAGC 1 cut(s) 1253
NlaIII CATG 2 cut(s) 574, 1171
NsiI ATGCAT 1 cut(s) 1273
NspI RCATGY 1 cut(s) 1171
PaeI GCATGC 1 cut(s) 1171
PcsI WCGNNNNNNNCGW 1 cut(s) 1000
PctI GAATGC 1 cut(s) 694
PfeI GAWTC 7 cut(s) 152, 178, 250, 461, 538, 1048, 1057
PflFI GACNNNGTC 1 cut(s) 74
PfoI TCCNGGA 1 cut(s) 640
PkrI GCNGC 4 cut(s) 55, 679, 876, 946
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp124BI GAGCTC 1 cut(s) 1045
Psp6I CCWGG 2 cut(s) 394, 640
PspGI CCWGG 2 cut(s) 394, 640
PspPI GGNCC 4 cut(s) 635, 664, 713, 1174
PstI CTGCAG 1 cut(s) 1056
PsuI RGATCY 2 cut(s) 105, 400
PsyI GACNNNGTC 1 cut(s) 74
RsaI GTAC 1 cut(s) 880
RsaNI GTAC 1 cut(s) 879
SacI GAGCTC 1 cut(s) 1045
SaqAI TTAA 4 cut(s) 192, 389, 659, 897
SatI GCNGC 4 cut(s) 54, 678, 875, 945
Sau3AI GATC 8 cut(s) 43, 105, 289, 400, 432, 930, 970, 1000
Sau96I GGNCC 4 cut(s) 635, 664, 713, 1174
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 4 cut(s) 396, 642, 667, 668
SduI GDGCHC 2 cut(s) 1045, 1138
SfaNI GCATC 4 cut(s) 754, 807, 811, 1177
SfcI CTRYAG 1 cut(s) 1052
SinI GGWCC 1 cut(s) 635
SmaI CCCGGG 1 cut(s) 668
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SphI GCATGC 1 cut(s) 1171
SrfI GCCCGGGC 1 cut(s) 668
SsiI CCGC 2 cut(s) 54, 838
SspMI CTAG 4 cut(s) 527, 1038, 1065, 1254
SstI GAGCTC 1 cut(s) 1045
StyD4I CCNGG 4 cut(s) 394, 640, 665, 666
TaiI ACGT 1 cut(s) 1092
TaqI TCGA 3 cut(s) 36, 96, 994
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 7 cut(s) 152, 178, 250, 461, 538, 1048, 1057
Tru1I TTAA 4 cut(s) 192, 389, 659, 897
Tru9I TTAA 4 cut(s) 192, 389, 659, 897
TscAI CASTG 1 cut(s) 1033
TseI GCWGC 3 cut(s) 677, 874, 944
TspDTI ATGAA 8 cut(s) 144, 263, 276, 724, 796, 828, 1088, 1233
TspMI CCCGGG 1 cut(s) 666
TspRI CASTG 1 cut(s) 1033
Tth111I GACNNNGTC 1 cut(s) 74
VneI GTGCAC 1 cut(s) 1134
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 1 cut(s) 111
XceI RCATGY 1 cut(s) 1171
XmaI CCCGGG 1 cut(s) 666
XspI CTAG 4 cut(s) 527, 1038, 1065, 1254
ZraI GACGTC 1 cut(s) 1090
Zsp2I ATGCAT 1 cut(s) 1273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.