Rh3BG129700

anion transporter 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0010728
Physical Location & Seq
Forward (+)
10994491 .. 10997731
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG129700.1

Sequence Viewer

Length: 1281 bp
ATGGCGGCTGTAACTCCTGCCAAATCTGTACTACATTCCTCGAGACCTAACCCACACCCTTCTCGTTTCTCAGCCTCCCCATCGACTTTGATCAATGCAAGAACAACCCAGTTGGGGCTTAGGCCTAGATTGCTCCACCAAGCAAAACCCACAAAATGGGTGGAGGGTTTTGATTATGGTTTAGGAAGAAACAGGGGAGCAAGTACAGAGAGGCTTCAGAGGAAACCATGTGTGGTGACGTGTACAGCAGAGGGCATAGAGGGGGGGATGATGATTGGGAGAAGAGAGAGGGGTTCTCTAGTGAGCGTGCCAGAGAGGTTCAAGGTTGTGGCTTTAGTGGCTTGTGTGATGTGTCTTTGTAATGCAGACAGAGTAGTCATGTCTGTGGCCGTTGTTCCACTTGCAGCTCAAAAGGGTTGGACCAGTTCTTTCTTGGGTGTTGTTCAGTCATCCTTTCTATGGGGATATATCTTCTCATCAGTAATCGGAGGAGCCTTAGTAGACAGATATGGAGGGAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCCACCCTCCTCACTCCCTGGGCTGCCAACCATTCTACAACCAGCCTATTGGCTGTTCGTGCCTTCTTTGGACTCGCTGAAGGTGTGGCCCTGCCTTCCATGAGCACCCTCTTATCAAGGTGGTTCCCGACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGCAATGTTACCGGCTTACTACTAACTCCAGTTATGATGTCATCAATGGGATTTTCTGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTGCTCTGGTTGACAATATGGACATATACAGTTACAAATGATCCAAGAGAGAGTGATTTCATCAGCAAATCAGAGCTCCGGTTGATCCAAGCTGGAAAATCTGATTCTCCAGTGAGCAACGACAAGTTCCCACCTCTGCGGCTCCTACTATCAAAACTACCAACATGGAGTATTATATTTGCCAACATAACTAATAATTGGGGATACTTTGTTCTGCTTTCTTGGATGCCTGTTTATTTCAAGACTGTATTTAATGATATAGCTCCTGAGTCCGCCGGGTTTCTCCATGGGATTTCAAATTCAGTAGGGACACTTGCAGCAATAGTCAGCACAATAGGAACAGGCTATTTTGTACAATGGCTGGGATCGTTTCAGGCATTCCTAACGGTCACCGCAGCTCTCTATTTCATGACAACCATCTTTTGGAACCTTTTTGCTACTGGAGAGCGAGTCTTCTAG

Protein Analysis

426

Amino Acids

46.46

Weight (kDa)

9.94

Isoelectric Point (pI)

33.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 115 - 419 1.7e-42 Major Facilitator Superfamily
Sugar_tr PF00083 141 - 223 1.2e-06 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010728)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38060 AT2G38060
fragaria_vesca FvH4_6g12020 FvH4_6g12020 FvH4_6g12020 FvH4_6g12020
malus_domestica MD04G1146900.v1.1
prunus_persica Prupe.6G270700_v2.0.a1
pyrus_communis pycom04g13270
rosa_chinensis RchiOBHm_Chr3g0463851
rosa_laevigata RLG00000024750
rosa_multiflora Rmu_sc0004796.1_g000002
rosa_roxburghii Rroxscaffold_6G00416250
rosa_rugosa Rorug03G0068400 Rorug03G0068500
rosa_samantha Rh3AG125600 Rh3BG129700 Rh3CG132200 Rh3DG130800
rosa_wichuraiana Rw3G010600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 374
AccB7I CCANNNNNTGG 2 cut(s) 156, 1245
AccI GTMKAC 1 cut(s) 501
AciI CCGC 4 cut(s) 5, 961, 1095, 1215
AclWI GGATC 3 cut(s) 857, 901, 1195
AcoI YGGCCR 3 cut(s) 387, 540, 555
AcsI RAATTY 2 cut(s) 711, 1120
AcuI CTGAAG 2 cut(s) 200, 654
AfaI GTAC 4 cut(s) 30, 205, 244, 1176
AfiI CCNNNNNNNGG 4 cut(s) 114, 156, 459, 1245
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 3 cut(s) 322, 1063, 1119
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 1 cut(s) 572
AloI GAACNNNNNNTCC 2 cut(s) 1017, 1049
AluBI AGCT 6 cut(s) 407, 698, 898, 914, 1085, 1220
AluI AGCT 6 cut(s) 407, 698, 898, 914, 1085, 1220
Alw21I GWGCWC 2 cut(s) 662, 900
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 3 cut(s) 857, 901, 1195
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 5 cut(s) 122, 387, 540, 555, 642
ApeKI GCWGC 4 cut(s) 404, 578, 1139, 1217
ApoI RAATTY 2 cut(s) 711, 1120
AspS9I GGNCC 3 cut(s) 420, 643, 794
AsuC2I CCSGG 1 cut(s) 1099
AsuHPI GGTGA 2 cut(s) 247, 1204
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 420, 794
BalI TGGCCA 2 cut(s) 542, 557
BanII GRGCYC 1 cut(s) 900
BbsI GAAGAC 1 cut(s) 1267
Bbv12I GWGCWC 2 cut(s) 662, 900
BbvI GCAGC 4 cut(s) 416, 565, 1151, 1229
BccI CCATC 3 cut(s) 88, 520, 1247
BceAI ACGGC 1 cut(s) 374
BciT130I CCWGG 1 cut(s) 574
BciVI GTATCC 1 cut(s) 1019
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 1099
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 4 cut(s) 126, 299, 699, 1279
BfuI GTATCC 1 cut(s) 1019
BisI GCNGC 6 cut(s) 6, 405, 579, 962, 1140, 1218
BlsI GCNGC 6 cut(s) 7, 406, 580, 963, 1141, 1219
Bme1390I CCNGG 2 cut(s) 574, 1099
Bme18I GGWCC 2 cut(s) 420, 794
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 420, 643, 794
BmiI GGNNCC 5 cut(s) 493, 680, 796, 965, 1250
BmrFI CCNGG 2 cut(s) 574, 1099
BmrI ACTGGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 1038
BmuI ACTGGG 1 cut(s) 103
BpiI GAAGAC 1 cut(s) 1267
BplI GAGNNNNNCTC 2 cut(s) 280, 312
BpmI CTGGAG 2 cut(s) 747, 915
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 1099
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 4 cut(s) 572, 573, 817, 1108
BsaWI WCCGGW 1 cut(s) 900
BsaXI ACNNNNNCTCC 3 cut(s) 483, 513, 1257
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 156, 459, 1245
Bse118I RCCGGY 1 cut(s) 746
Bse1I ACTGG 5 cut(s) 109, 423, 764, 932, 1267
Bse3DI GCAATG 1 cut(s) 745
BseBI CCWGG 1 cut(s) 574
BseDI CCNNGG 4 cut(s) 572, 573, 817, 1108
BseGI GGATG 3 cut(s) 273, 449, 1053
BseLI CCNNNNNNNGG 4 cut(s) 114, 156, 459, 1245
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 84, 1080
BseNI ACTGG 5 cut(s) 109, 423, 764, 932, 1267
BseRI GAGGAG 3 cut(s) 504, 554, 802
BseXI GCAGC 4 cut(s) 416, 565, 1151, 1229
BseYI CCCAGC 2 cut(s) 722, 1183
BsgI GTGCAG 1 cut(s) 723
BshFI GGCC 5 cut(s) 124, 389, 542, 557, 644
BsiHKAI GWGCWC 2 cut(s) 662, 900
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 747, 901, 1098
BslFI GGGAC 2 cut(s) 780, 1144
BslI CCNNNNNNNGG 4 cut(s) 114, 156, 459, 1245
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 780, 1144
BsmI GAATGC 1 cut(s) 1199
BsnI GGCC 5 cut(s) 124, 389, 542, 557, 644
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 2 cut(s) 662, 900
Bsp1407I TGTACA 2 cut(s) 242, 1174
Bsp143I GATC 4 cut(s) 90, 862, 906, 1187
Bsp19I CCATGG 1 cut(s) 1108
BspACI CCGC 4 cut(s) 5, 961, 1095, 1215
BspANI GGCC 5 cut(s) 124, 389, 542, 557, 644
BspCNI CTCAG 2 cut(s) 83, 1081
BspHI TCATGA 1 cut(s) 1230
BspLI GGNNCC 5 cut(s) 493, 680, 796, 965, 1250
BspPI GGATC 3 cut(s) 857, 901, 1195
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 746
BsrGI TGTACA 2 cut(s) 242, 1174
BsrI ACTGG 5 cut(s) 109, 423, 764, 932, 1267
BssAI RCCGGY 1 cut(s) 746
BssECI CCNNGG 4 cut(s) 572, 573, 817, 1108
BssMI GATC 4 cut(s) 90, 862, 906, 1187
BssT1I CCWWGG 2 cut(s) 817, 1108
Bst2UI CCWGG 1 cut(s) 574
Bst4CI ACNGT 3 cut(s) 853, 1069, 1210
Bst6I CTCTTC 3 cut(s) 277, 512, 812
BstAUI TGTACA 2 cut(s) 242, 1174
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 4 cut(s) 70, 119, 496, 1089
BstDSI CCRYGG 1 cut(s) 1108
BstEII GGTNACC 1 cut(s) 1210
BstF5I GGATG 3 cut(s) 273, 449, 1053
BstKTI GATC 4 cut(s) 93, 865, 909, 1190
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 90, 862, 906, 1187
BstMWI GCNNNNNNNGC 3 cut(s) 130, 338, 614
BstNI CCWGG 1 cut(s) 574
BstPI GGTNACC 1 cut(s) 1210
BstSCI CCNGG 2 cut(s) 572, 1097
BstV1I GCAGC 4 cut(s) 416, 565, 1151, 1229
BstV2I GAAGAC 1 cut(s) 1267
BstXI CCANNNNNNTGG 1 cut(s) 604
BsuI GTATCC 1 cut(s) 1019
BsuRI GGCC 5 cut(s) 124, 389, 542, 557, 644
BtgI CCRYGG 1 cut(s) 1108
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 273, 449, 1053
BtsIMutI CAGTG 1 cut(s) 939
Cac8I GCNNGC 1 cut(s) 308
CciI TCATGA 1 cut(s) 1230
Cfr10I RCCGGY 1 cut(s) 746
Cfr13I GGNCC 3 cut(s) 420, 643, 794
Csp6I GTAC 4 cut(s) 29, 204, 243, 1175
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviAII CATG 9 cut(s) 228, 379, 531, 544, 655, 689, 987, 1109, 1231
CviQI GTAC 4 cut(s) 29, 204, 243, 1175
DdeI CTNAG 4 cut(s) 70, 119, 496, 1089
DpnI GATC 4 cut(s) 92, 864, 908, 1189
DpnII GATC 4 cut(s) 90, 862, 906, 1187
DrdI GACNNNNNNGTC 1 cut(s) 374
DseDI GACNNNNNNGTC 1 cut(s) 374
EaeI YGGCCR 3 cut(s) 387, 540, 555
Eam1104I CTCTTC 3 cut(s) 277, 512, 812
EarI CTCTTC 3 cut(s) 277, 512, 812
EciI GGCGGA 1 cut(s) 1084
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 2 cut(s) 817, 1108
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 900
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 420, 794
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 2 cut(s) 200, 654
Eco88I CYCGRG 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 1210
EcoICRI GAGCTC 1 cut(s) 898
EcoO65I GGTNACC 1 cut(s) 1210
EcoRII CCWGG 1 cut(s) 572
EcoT14I CCWWGG 2 cut(s) 817, 1108
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 2 cut(s) 817, 1108
FaeI CATG 9 cut(s) 231, 382, 534, 547, 658, 692, 990, 1112, 1234
FaqI GGGAC 2 cut(s) 780, 1144
FatI CATG 9 cut(s) 227, 378, 530, 543, 654, 688, 986, 1108, 1230
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 6 cut(s) 6, 405, 579, 962, 1140, 1218
FokI GGATG 3 cut(s) 280, 436, 1060
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 6 cut(s) 6, 405, 579, 962, 1140, 1218
FspBI CTAG 4 cut(s) 126, 299, 699, 1279
GluI GCNGC 6 cut(s) 6, 405, 579, 962, 1140, 1218
GsaI CCCAGC 2 cut(s) 726, 1187
GsuI CTGGAG 2 cut(s) 747, 915
HaeIII GGCC 5 cut(s) 124, 389, 542, 557, 644
HapII CCGG 3 cut(s) 747, 901, 1098
Hin1II CATG 9 cut(s) 231, 382, 534, 547, 658, 692, 990, 1112, 1234
HincII GTYRAC 1 cut(s) 834
HindII GTYRAC 1 cut(s) 834
HinfI GANTC 4 cut(s) 627, 926, 1091, 1272
HpaII CCGG 3 cut(s) 747, 901, 1098
HphI GGTGA 2 cut(s) 247, 1204
Hpy166II GTNNAC 3 cut(s) 243, 502, 834
Hpy188I TCNGA 4 cut(s) 219, 488, 895, 925
Hpy188III TCNNGA 5 cut(s) 42, 682, 1063, 1088, 1231
Hpy8I GTNNAC 3 cut(s) 243, 502, 834
HpyAV CCTTC 4 cut(s) 69, 628, 629, 660
HpyCH4III ACNGT 3 cut(s) 853, 1069, 1210
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 5 cut(s) 98, 365, 404, 704, 1139
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 338, 614
HpyF3I CTNAG 4 cut(s) 70, 119, 496, 1089
HpySE526I ACGT 1 cut(s) 239
Hsp92II CATG 9 cut(s) 231, 382, 534, 547, 658, 692, 990, 1112, 1234
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 4 cut(s) 90, 862, 906, 1187
LmnI GCTCC 6 cut(s) 138, 197, 491, 903, 969, 1090
Lsp1109I GCAGC 4 cut(s) 416, 565, 1151, 1229
LweI GCATC 1 cut(s) 1038
MaeI CTAG 4 cut(s) 126, 299, 699, 1279
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 5 cut(s) 10, 235, 742, 853, 1210
MalI GATC 4 cut(s) 92, 864, 908, 1189
MboI GATC 4 cut(s) 90, 862, 906, 1187
MboII GAAGA 6 cut(s) 198, 294, 463, 529, 799, 1267
MhlI GDGCHC 2 cut(s) 662, 900
MlsI TGGCCA 2 cut(s) 542, 557
MluCI AATT 3 cut(s) 711, 1018, 1120
MluNI TGGCCA 2 cut(s) 542, 557
MlyI GAGTC 3 cut(s) 621, 1100, 1281
MmeI TCCRAC 2 cut(s) 398, 688
Mox20I TGGCCA 2 cut(s) 542, 557
MscI TGGCCA 2 cut(s) 542, 557
MseI TTAA 1 cut(s) 1074
MslI CAYNNNNRTG 1 cut(s) 383
Msp20I TGGCCA 2 cut(s) 542, 557
MspI CCGG 3 cut(s) 747, 901, 1098
MspR9I CCNGG 2 cut(s) 574, 1099
Mva1269I GAATGC 1 cut(s) 1199
MvaI CCWGG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 130, 338, 614
NciI CCSGG 1 cut(s) 1099
NcoI CCATGG 1 cut(s) 1108
NdeII GATC 4 cut(s) 90, 862, 906, 1187
NlaIII CATG 9 cut(s) 231, 382, 534, 547, 658, 692, 990, 1112, 1234
NlaIV GGNNCC 5 cut(s) 493, 680, 796, 965, 1250
NmuCI GTSAC 2 cut(s) 235, 1210
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 1230
PasI CCCWGGG 1 cut(s) 573
PceI AGGCCT 1 cut(s) 124
PctI GAATGC 1 cut(s) 1199
PfeI GAWTC 1 cut(s) 926
PflMI CCANNNNNTGG 2 cut(s) 156, 1245
PkrI GCNGC 6 cut(s) 7, 406, 580, 963, 1141, 1219
PleI GAGTC 3 cut(s) 621, 1099, 1280
PpsI GAGTC 3 cut(s) 621, 1099, 1280
Psp124BI GAGCTC 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 572
PspEI GGTNACC 1 cut(s) 1210
PspFI CCCAGC 2 cut(s) 722, 1183
PspGI CCWGG 1 cut(s) 572
PspN4I GGNNCC 5 cut(s) 493, 680, 796, 965, 1250
PspPI GGNCC 3 cut(s) 420, 643, 794
RsaI GTAC 4 cut(s) 30, 205, 244, 1176
RsaNI GTAC 4 cut(s) 29, 204, 243, 1175
RseI CAYNNNNRTG 1 cut(s) 383
SacI GAGCTC 1 cut(s) 900
SaqAI TTAA 1 cut(s) 1074
SatI GCNGC 6 cut(s) 6, 405, 579, 962, 1140, 1218
Sau3AI GATC 4 cut(s) 90, 862, 906, 1187
Sau96I GGNCC 3 cut(s) 420, 643, 794
SchI GAGTC 3 cut(s) 621, 1100, 1281
ScrFI CCNGG 2 cut(s) 574, 1099
SduI GDGCHC 2 cut(s) 662, 900
SfaNI GCATC 1 cut(s) 1038
Sfr274I CTCGAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 420, 794
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 3 cut(s) 711, 1018, 1120
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 4 cut(s) 5, 961, 1095, 1215
SspMI CTAG 4 cut(s) 126, 299, 699, 1279
SstI GAGCTC 1 cut(s) 900
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 2 cut(s) 572, 1097
StyI CCWWGG 2 cut(s) 817, 1108
TaaI ACNGT 3 cut(s) 853, 1069, 1210
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 41, 83
TasI AATT 3 cut(s) 711, 1018, 1120
TatI WGTACW 4 cut(s) 28, 203, 242, 1174
TauI GCSGC 2 cut(s) 8, 964
TfiI GAWTC 1 cut(s) 926
Tru1I TTAA 1 cut(s) 1074
Tru9I TTAA 1 cut(s) 1074
TscAI CASTG 1 cut(s) 939
TseFI GTSAC 2 cut(s) 235, 1210
TseI GCWGC 4 cut(s) 404, 578, 1139, 1217
Tsp45I GTSAC 2 cut(s) 235, 1210
TspDTI ATGAA 4 cut(s) 705, 719, 871, 1219
TspRI CASTG 1 cut(s) 939
Van91I CCANNNNNTGG 2 cut(s) 156, 1245
VpaK11BI GGWCC 2 cut(s) 420, 794
XapI RAATTY 2 cut(s) 711, 1120
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 430, 550
XhoI CTCGAG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 4 cut(s) 126, 299, 699, 1279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.