Rw3G010600

anion transporter 3

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
10254704 .. 10257943
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010600.1

Sequence Viewer

Length: 1512 bp
ATGGCGGCTGTAACTCCTGCCAAATCTGTACTACATTCCTCGAGACCTAACCCACACTCTTCTCGTTTCTCAGCCTCCCCATCGACTTTGATCAATGCAAGAACAACCCACTTGGGGCTTAGGCCTAGATTGCTCCACCAAGCAAAACCCACAAAATGGGTGGCGGGTTTTGCTTATGGTTTAGGAAGAAACAGGGGAGCAAGTACAGAGAGGCTTCAGAGGAAACCATGTGTGGTGACGTGTACAGCAGAGGGCATAGAGAGGGGGATGATGATTGGGAGAAGAGAGAGGGTGGCTTGTGTGATGTGTCTTTGTAATGCAGACAGAGTAGTCATGTCTGTGGCCGTTGTTCCACTTGCAGCTCAAAAGGGTTGGACCAGTTCTTTCTTGGGTGTTGTTCAGTCATCCTTTCTATGGGGATATATCTTCTCATCAGTAATCGGAGGAGCCTTAGTAGACAGATATGGAGGGAAGAGAGTGATGGCATGGGGTGTGGCCATGTGGTCTTTGGCCACCCTCCTCACTCCCTGGGCTGCCAACCATTCTACAACCAGCCTATTGGCTGTTCGTGCCTTCTTTGGACTCGCTGAAGGTGTGGCCCTGCCTTCCATGAGCACCCTCTTATCAAGGTGGTTCCCGACCCATGAAAGAGCTAGTGCAGTTGGAATTTCTATGGCTGGGTTTCATCTTGGCAATGTTACCGGCTTACTACTAACTCCAGTTATGATGTCATCAATGGGATTTTCTGGTCCCTTTATTCTCTTCTCCTCCCTTGGACTGCTCTGGTTGACAATATGGACATATACAGTCACAAATGATCCAAGAGAGAGTGATTTCATCAGCAAATCAGAGCTCCGGTTGATCCAAGCTGGAAAATCTGATTCTCCAGTGAGCAACGACAAGTTCCCACCTCTGCGGCTCCTACTATCAAAACTACCAACATGGAGTATTATATTTGCCAACATAACTAATAATTGGGGATACTTTGTTCTGCTTTCTTGGATGCCTGTTTATTTCAAGACTGTATTTAATGTAAACTTGAAACAAGCAGCTTGGTTTAGTGCTGTTCCATGGGGAACAATGGCAATTTCCAGCTGCATTGCTGGCACAACATCAGATTCCTTAATCAAGGCTGGCTACTCTTTGACGATAGTCCGAAAGATCATGCAGTCCATCGGTTTCATTGGGCCTGGAGTGTCATTGCTGTGCTTGAACTATGCCAACACACCCACGGCTGCAGCGGTACTCCTTACAGCAGCCTTATGTTTGAGCTCTTTCAGTCAAGCTGGCTTTCTCCTCAATATACAAGATATAGCTCCTGAGTCCGCCGGGTTTCTCCATGGGATTTCAAATTCAGTAGGGACACTTGCAGCAATAGTCAGCACAATAGGAACAGGCTATTTTGTACAATGGCTGGGATCGTTTCAGGCATTCCTAACGGTCACCGCAGCTCTCTATTTCATGACAACCATCTTTTGGAACCTTTTTGCTACTGGAGAGCGAGTCTTCTAG

Protein Analysis

503

Amino Acids

54.4

Weight (kDa)

9.97

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 100 - 461 3e-49 Major Facilitator Superfamily
Sugar_tr PF00083 126 - 208 1.1e-06 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010728)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccB7I CCANNNNNTGG 2 cut(s) 156, 1476
AccI GTMKAC 1 cut(s) 456
AciI CCGC 6 cut(s) 5, 164, 916, 1241, 1326, 1446
AclWI GGATC 3 cut(s) 812, 856, 1426
AcoI YGGCCR 3 cut(s) 342, 495, 510
AcsI RAATTY 2 cut(s) 666, 1351
AcuI CTGAAG 2 cut(s) 200, 609
AfaI GTAC 5 cut(s) 30, 205, 244, 1245, 1407
AfiI CCNNNNNNNGG 4 cut(s) 114, 156, 414, 1476
AflIII ACRYGT 1 cut(s) 239
AgsI TTSAA 4 cut(s) 1018, 1042, 1213, 1350
AjiI CACGTC 1 cut(s) 240
AjnI CCWGG 2 cut(s) 527, 1189
AloI GAACNNNNNNTCC 2 cut(s) 972, 1004
Alw21I GWGCWC 3 cut(s) 617, 855, 1274
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 3 cut(s) 812, 856, 1426
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 6 cut(s) 122, 342, 495, 510, 597, 1187
ApeKI GCWGC 9 cut(s) 359, 533, 1049, 1095, 1235, 1238, 1256, 1370, 1448
ApoI RAATTY 2 cut(s) 666, 1351
AspS9I GGNCC 4 cut(s) 375, 598, 749, 1187
AsuC2I CCSGG 1 cut(s) 1330
AsuHPI GGTGA 2 cut(s) 247, 1435
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 375, 749
BalI TGGCCA 2 cut(s) 497, 512
BanII GRGCYC 2 cut(s) 855, 1274
BbsI GAAGAC 1 cut(s) 1498
Bbv12I GWGCWC 3 cut(s) 617, 855, 1274
BbvI GCAGC 9 cut(s) 371, 520, 1061, 1082, 1222, 1250, 1268, 1382, 1460
BccI CCATC 4 cut(s) 88, 475, 1181, 1478
BceAI ACGGC 2 cut(s) 329, 1248
BciT130I CCWGG 2 cut(s) 529, 1191
BciVI GTATCC 1 cut(s) 974
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 1330
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 126, 654, 1510
BfmI CTRYAG 1 cut(s) 1236
BfuI GTATCC 1 cut(s) 974
Bme1390I CCNGG 3 cut(s) 529, 1191, 1330
Bme18I GGWCC 2 cut(s) 375, 749
BmeT110I CYCGRG 1 cut(s) 40
BmgBI CACGTC 1 cut(s) 240
BmgT120I GGNCC 4 cut(s) 375, 598, 749, 1187
BmiI GGNNCC 5 cut(s) 448, 635, 751, 920, 1481
BmrFI CCNGG 3 cut(s) 529, 1191, 1330
BmsI GCATC 1 cut(s) 993
BoxI GACNNNNGTC 1 cut(s) 1151
BpiI GAAGAC 1 cut(s) 1498
BpmI CTGGAG 3 cut(s) 702, 870, 1212
Bpu10I CCTNAGC 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 1330
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 6 cut(s) 527, 528, 772, 1070, 1230, 1339
BsaWI WCCGGW 1 cut(s) 855
BsaXI ACNNNNNCTCC 3 cut(s) 438, 468, 1488
Bsc4I CCNNNNNNNGG 4 cut(s) 114, 156, 414, 1476
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 4 cut(s) 378, 719, 887, 1498
Bse3DI GCAATG 3 cut(s) 700, 1098, 1199
BseBI CCWGG 2 cut(s) 529, 1191
BseDI CCNNGG 6 cut(s) 527, 528, 772, 1070, 1230, 1339
BseGI GGATG 3 cut(s) 273, 404, 1008
BseLI CCNNNNNNNGG 4 cut(s) 114, 156, 414, 1476
BseMI GCAATG 3 cut(s) 700, 1098, 1199
BseMII CTCAG 2 cut(s) 84, 1311
BseNI ACTGG 4 cut(s) 378, 719, 887, 1498
BseRI GAGGAG 4 cut(s) 459, 509, 757, 1286
BseXI GCAGC 9 cut(s) 371, 520, 1061, 1082, 1222, 1250, 1268, 1382, 1460
BseYI CCCAGC 2 cut(s) 677, 1414
BsgI GTGCAG 1 cut(s) 678
BshFI GGCC 6 cut(s) 124, 344, 497, 512, 599, 1189
BsiHKAI GWGCWC 3 cut(s) 617, 855, 1274
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 3 cut(s) 702, 856, 1329
BslFI GGGAC 2 cut(s) 735, 1375
BslI CCNNNNNNNGG 4 cut(s) 114, 156, 414, 1476
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 735, 1375
BsmI GAATGC 1 cut(s) 1430
BsnI GGCC 6 cut(s) 124, 344, 497, 512, 599, 1189
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 3 cut(s) 617, 855, 1274
Bsp1407I TGTACA 2 cut(s) 242, 1405
Bsp143I GATC 5 cut(s) 90, 817, 861, 1161, 1418
Bsp19I CCATGG 2 cut(s) 1070, 1339
BspACI CCGC 6 cut(s) 5, 164, 916, 1241, 1326, 1446
BspANI GGCC 6 cut(s) 124, 344, 497, 512, 599, 1189
BspCNI CTCAG 2 cut(s) 83, 1312
BspHI TCATGA 1 cut(s) 1461
BspLI GGNNCC 5 cut(s) 448, 635, 751, 920, 1481
BspMAI CTGCAG 1 cut(s) 1240
BspPI GGATC 3 cut(s) 812, 856, 1426
BspTNI GGTCTC 1 cut(s) 37
BsrDI GCAATG 3 cut(s) 700, 1098, 1199
BsrFI RCCGGY 1 cut(s) 701
BsrGI TGTACA 2 cut(s) 242, 1405
BsrI ACTGG 4 cut(s) 378, 719, 887, 1498
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 6 cut(s) 527, 528, 772, 1070, 1230, 1339
BssMI GATC 5 cut(s) 90, 817, 861, 1161, 1418
BssT1I CCWWGG 3 cut(s) 772, 1070, 1339
Bst2UI CCWGG 2 cut(s) 529, 1191
Bst4CI ACNGT 3 cut(s) 808, 1024, 1441
Bst6I CTCTTC 4 cut(s) 64, 277, 467, 767
BstAUI TGTACA 2 cut(s) 242, 1405
BstC8I GCNNGC 3 cut(s) 1105, 1135, 1288
BstDEI CTNAG 4 cut(s) 70, 119, 451, 1320
BstDSI CCRYGG 3 cut(s) 1070, 1230, 1339
BstEII GGTNACC 1 cut(s) 1441
BstF5I GGATG 3 cut(s) 273, 404, 1008
BstKTI GATC 5 cut(s) 93, 820, 864, 1164, 1421
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 5 cut(s) 90, 817, 861, 1161, 1418
BstMWI GCNNNNNNNGC 4 cut(s) 130, 170, 569, 1104
BstNI CCWGG 2 cut(s) 529, 1191
BstPAI GACNNNNGTC 1 cut(s) 1151
BstPI GGTNACC 1 cut(s) 1441
BstSCI CCNGG 3 cut(s) 527, 1189, 1328
BstSFI CTRYAG 1 cut(s) 1236
BstV1I GCAGC 9 cut(s) 371, 520, 1061, 1082, 1222, 1250, 1268, 1382, 1460
BstV2I GAAGAC 1 cut(s) 1498
BstXI CCANNNNNNTGG 1 cut(s) 559
BsuI GTATCC 1 cut(s) 974
BsuRI GGCC 6 cut(s) 124, 344, 497, 512, 599, 1189
BtgI CCRYGG 3 cut(s) 1070, 1230, 1339
BtrI CACGTC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 273, 404, 1008
BtsIMutI CAGTG 1 cut(s) 894
Cac8I GCNNGC 3 cut(s) 1105, 1135, 1288
CciI TCATGA 1 cut(s) 1461
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 4 cut(s) 375, 598, 749, 1187
Csp6I GTAC 5 cut(s) 29, 204, 243, 1244, 1406
CspCI CAANNNNNGTGG 2 cut(s) 141, 176
CviQI GTAC 5 cut(s) 29, 204, 243, 1244, 1406
DdeI CTNAG 4 cut(s) 70, 119, 451, 1320
DpnI GATC 5 cut(s) 92, 819, 863, 1163, 1420
DpnII GATC 5 cut(s) 90, 817, 861, 1161, 1418
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 3 cut(s) 342, 495, 510
Eam1104I CTCTTC 4 cut(s) 64, 277, 467, 767
EarI CTCTTC 4 cut(s) 64, 277, 467, 767
EciI GGCGGA 1 cut(s) 1315
Ecl136II GAGCTC 2 cut(s) 853, 1272
Eco130I CCWWGG 3 cut(s) 772, 1070, 1339
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 2 cut(s) 855, 1274
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 375, 749
Eco53kI GAGCTC 2 cut(s) 853, 1272
Eco57I CTGAAG 2 cut(s) 200, 609
Eco88I CYCGRG 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 1441
EcoICRI GAGCTC 2 cut(s) 853, 1272
EcoO65I GGTNACC 1 cut(s) 1441
EcoRII CCWGG 2 cut(s) 527, 1189
EcoT14I CCWWGG 3 cut(s) 772, 1070, 1339
EcoT38I GRGCYC 2 cut(s) 855, 1274
ErhI CCWWGG 3 cut(s) 772, 1070, 1339
FaqI GGGAC 2 cut(s) 735, 1375
FauI CCCGC 1 cut(s) 157
FbaI TGATCA 1 cut(s) 90
FblI GTMKAC 1 cut(s) 456
FokI GGATG 3 cut(s) 280, 391, 1015
FriOI GRGCYC 2 cut(s) 855, 1274
FspBI CTAG 3 cut(s) 126, 654, 1510
GsaI CCCAGC 2 cut(s) 681, 1418
GsuI CTGGAG 3 cut(s) 702, 870, 1212
HaeIII GGCC 6 cut(s) 124, 344, 497, 512, 599, 1189
HapII CCGG 3 cut(s) 702, 856, 1329
HincII GTYRAC 1 cut(s) 789
HindII GTYRAC 1 cut(s) 789
HinfI GANTC 5 cut(s) 582, 881, 1118, 1322, 1503
HpaII CCGG 3 cut(s) 702, 856, 1329
HphI GGTGA 2 cut(s) 247, 1435
Hpy166II GTNNAC 4 cut(s) 243, 457, 789, 1036
Hpy188I TCNGA 6 cut(s) 219, 443, 850, 880, 1117, 1157
Hpy188III TCNNGA 5 cut(s) 42, 637, 1018, 1319, 1462
Hpy8I GTNNAC 4 cut(s) 243, 457, 789, 1036
HpyAV CCTTC 3 cut(s) 583, 584, 615
HpyCH4III ACNGT 3 cut(s) 808, 1024, 1441
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 8 cut(s) 98, 320, 359, 659, 1098, 1168, 1238, 1370
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 170, 569, 1104
HpyF3I CTNAG 4 cut(s) 70, 119, 451, 1320
HpySE526I ACGT 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 5 cut(s) 90, 817, 861, 1161, 1418
LmnI GCTCC 6 cut(s) 138, 197, 446, 858, 924, 1321
Lsp1109I GCAGC 9 cut(s) 371, 520, 1061, 1082, 1222, 1250, 1268, 1382, 1460
LweI GCATC 1 cut(s) 993
MaeI CTAG 3 cut(s) 126, 654, 1510
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 5 cut(s) 10, 235, 697, 808, 1441
MalI GATC 5 cut(s) 92, 819, 863, 1163, 1420
MboI GATC 5 cut(s) 90, 817, 861, 1161, 1418
MboII GAAGA 7 cut(s) 51, 198, 294, 418, 484, 754, 1498
MhlI GDGCHC 3 cut(s) 617, 855, 1274
MlsI TGGCCA 2 cut(s) 497, 512
MluCI AATT 4 cut(s) 666, 973, 1086, 1351
MluNI TGGCCA 2 cut(s) 497, 512
MlyI GAGTC 3 cut(s) 576, 1331, 1512
MmeI TCCRAC 2 cut(s) 353, 643
Mox20I TGGCCA 2 cut(s) 497, 512
MscI TGGCCA 2 cut(s) 497, 512
MseI TTAA 2 cut(s) 1029, 1124
MslI CAYNNNNRTG 2 cut(s) 338, 1204
Msp20I TGGCCA 2 cut(s) 497, 512
MspA1I CMGCKG 2 cut(s) 1095, 1241
MspI CCGG 3 cut(s) 702, 856, 1329
MspR9I CCNGG 3 cut(s) 529, 1191, 1330
Mva1269I GAATGC 1 cut(s) 1430
MvaI CCWGG 2 cut(s) 529, 1191
MwoI GCNNNNNNNGC 4 cut(s) 130, 170, 569, 1104
NciI CCSGG 1 cut(s) 1330
NcoI CCATGG 2 cut(s) 1070, 1339
NdeII GATC 5 cut(s) 90, 817, 861, 1161, 1418
NlaIV GGNNCC 5 cut(s) 448, 635, 751, 920, 1481
NmuCI GTSAC 3 cut(s) 235, 808, 1441
PaeR7I CTCGAG 1 cut(s) 40
PagI TCATGA 1 cut(s) 1461
PasI CCCWGGG 1 cut(s) 528
PceI AGGCCT 1 cut(s) 124
PctI GAATGC 1 cut(s) 1430
PfeI GAWTC 2 cut(s) 881, 1118
PflMI CCANNNNNTGG 2 cut(s) 156, 1476
PleI GAGTC 3 cut(s) 576, 1330, 1511
PpsI GAGTC 3 cut(s) 576, 1330, 1511
PshAI GACNNNNGTC 1 cut(s) 1151
Psp124BI GAGCTC 2 cut(s) 855, 1274
Psp6I CCWGG 2 cut(s) 527, 1189
PspEI GGTNACC 1 cut(s) 1441
PspFI CCCAGC 2 cut(s) 677, 1414
PspGI CCWGG 2 cut(s) 527, 1189
PspN4I GGNNCC 5 cut(s) 448, 635, 751, 920, 1481
PspPI GGNCC 4 cut(s) 375, 598, 749, 1187
PstI CTGCAG 1 cut(s) 1240
PvuII CAGCTG 1 cut(s) 1095
RsaI GTAC 5 cut(s) 30, 205, 244, 1245, 1407
RsaNI GTAC 5 cut(s) 29, 204, 243, 1244, 1406
RseI CAYNNNNRTG 2 cut(s) 338, 1204
SacI GAGCTC 2 cut(s) 855, 1274
SaqAI TTAA 2 cut(s) 1029, 1124
Sau3AI GATC 5 cut(s) 90, 817, 861, 1161, 1418
Sau96I GGNCC 4 cut(s) 375, 598, 749, 1187
SchI GAGTC 3 cut(s) 576, 1331, 1512
ScrFI CCNGG 3 cut(s) 529, 1191, 1330
SduI GDGCHC 3 cut(s) 617, 855, 1274
SfaNI GCATC 1 cut(s) 993
SfcI CTRYAG 1 cut(s) 1236
Sfr274I CTCGAG 1 cut(s) 40
SinI GGWCC 2 cut(s) 375, 749
SlaI CTCGAG 1 cut(s) 40
SmiMI CAYNNNNRTG 2 cut(s) 338, 1204
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
Sse9I AATT 4 cut(s) 666, 973, 1086, 1351
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 6 cut(s) 5, 164, 916, 1241, 1326, 1446
SspMI CTAG 3 cut(s) 126, 654, 1510
SstI GAGCTC 2 cut(s) 855, 1274
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 527, 1189, 1328
StyI CCWWGG 3 cut(s) 772, 1070, 1339
TaaI ACNGT 3 cut(s) 808, 1024, 1441
TaiI ACGT 1 cut(s) 242
TaqI TCGA 2 cut(s) 41, 83
TasI AATT 4 cut(s) 666, 973, 1086, 1351
TatI WGTACW 4 cut(s) 28, 203, 242, 1405
TauI GCSGC 2 cut(s) 8, 919
TfiI GAWTC 2 cut(s) 881, 1118
Tru1I TTAA 2 cut(s) 1029, 1124
Tru9I TTAA 2 cut(s) 1029, 1124
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 3 cut(s) 235, 808, 1441
TseI GCWGC 9 cut(s) 359, 533, 1049, 1095, 1235, 1238, 1256, 1370, 1448
Tsp45I GTSAC 3 cut(s) 235, 808, 1441
TspDTI ATGAA 5 cut(s) 660, 674, 826, 1171, 1450
TspRI CASTG 1 cut(s) 894
Van91I CCANNNNNTGG 2 cut(s) 156, 1476
VpaK11BI GGWCC 2 cut(s) 375, 749
XapI RAATTY 2 cut(s) 666, 1351
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 385, 505
XhoI CTCGAG 1 cut(s) 40
XmiI GTMKAC 1 cut(s) 456
XspI CTAG 3 cut(s) 126, 654, 1510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.