Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014885

Physical Location & Seq

Genomic Coordinates Reverse (-)

8285112 .. 8288585

Gene Structure 3474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGGGATTTGCTGGAGTAACAAGATCAAGTCTGTAAGTCCTTCTAATACAGGATACAATTCTAGAAGTGCGAGTAGGGATGGTTCAAGTGGCAAGGCCTCATCGAGCTCCATGCCTACAACTCCTCGGAGTGAAGGGGAGATTTTGCAATCCTGCAATTTGAACAGCATCAGCTTCACTGAGCTCAAAAATGCTACAAGAAACTTCCGTCCCGATAGTGTACTAGGAGAAGGCGGTTTTGGTTCCGTTTTCAAAGGTTGGATTGACGAGAGTACGCTTATAGCTACCAAAGCTGGGTCTGGCATGGTAATTGCTGTGAAGAGACTCACCCCAGATGGTTTCCAGGGCCATAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTACAGCATCCTAATCTTGTGAAATTGATTGGTTATTGCTTAGAAGATGAGCACCGGCTCCTGGTGTATGAGTTCATGCCTAAGGGCAGCATGGAAAATCATCTATTCAGGAGAAGTACTCACTTTCAGCCTCTTTCTTGGACCCTGCGAATGAAAATTGCCCTTGGTTCTGCAAAGGGACTTGCCTTTCTGCACAATGCTGAACAACAAGTCATACATCGTGATTTCAAGTCTGGCAATATTTTGCTTGACTCGAACTACAATGCGAAACTGGCTGATTTTGGGCTGGCGAGGGATGGACCAACTGGCGACAAAAGCCATGTCTCTACTAGGGTCATAGGAACCCAAGGATATGCTGCTCCTGAGTACCTAGCCACAGGTCATCTTACTGCCAAGAGTGACATATACGGCTTTGGAGTTGTTCTTCTAGAAATGTTATCTGGACGACGAGCTATAGATAGAAACAGGCCAGCTGGTGAACACAACCTGGTAGAATGGGCAAAACCATACCTGACCAACAAAAGGCGAGTTTTACGTGTTATAGATCCTCGACTTGAAGGCCAATACTCACTCAATCGTGCCCAAAAGGCTGCCAGCCTAGCACTTCAATGTCTTTCTACTGATCCTAAGTACAGACCAGACATGAATGAAGTGGTAACTACACTGGAGCAGCTTCAGGACACTACAAAGGACATGCCCAAAGGTGGTCAGAAAGAGCACCATGCAACTAGTAATGGACTTCCTAAGAGAAGCAGCGCCAATGATGCTCCCAATAGAGTAACTGTTAATTATCCAAGACCTTCTGCAAACCCACTTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

404

Amino Acids

44.49

Weight (kDa)

9.45

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 348	2.4e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 351	6e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02290 AT5G02290
fragaria_vesca	FvH4_6g13630 FvH4_6g13630
malus_domestica	MD04G1129600.v1.1 MD12G1142600.v1.1
prunus_persica	Prupe.6G255900_v2.0.a1
pyrus_communis	pycom04g11800 pycom12g13750
rosa_chinensis	RchiOBHm_Chr3g0466481
rosa_laevigata	RLG00000024570
rosa_multiflora	Rmu_sc0003332.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414430
rosa_rugosa	Rorug03G0082300
rosa_samantha	Rh3DG150900
rosa_wichuraiana	Rw3G012190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	926, 1004
AcuI	CTGAAG	1 cut(s)	1046
AfaI	GTAC	5 cut(s)	222, 274, 505, 755, 1019
AfiI	CCNNNNNNNGG	4 cut(s)	294, 448, 909, 1091
AflIII	ACRYGT	1 cut(s)	922
AgsI	TTSAA	6 cut(s)	87, 163, 253, 616, 944, 995
AhlI	ACTAGT	1 cut(s)	1115
AjnI	CCWGG	3 cut(s)	342, 447, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	9 cut(s)	108, 174, 184, 284, 293, 388, 839, 860, 1060
AluI	AGCT	9 cut(s)	108, 174, 184, 284, 293, 388, 839, 860, 1060
Alw21I	GWGCWC	4 cut(s)	110, 186, 441, 1107
Alw26I	GTCTC	2 cut(s)	316, 715
AlwI	GGATC	2 cut(s)	926, 1004
AoxI	GGCC	4 cut(s)	96, 346, 854, 946
ApeKI	GCWGC	5 cut(s)	474, 743, 977, 1057, 1140
ArsI	GACNNNNNNTTYG	2 cut(s)	693, 725
AspLEI	GCGC	1 cut(s)	1145
AspS9I	GGNCC	3 cut(s)	346, 528, 686
AsuHPI	GGTGA	2 cut(s)	319, 875
AvaII	GGWCC	2 cut(s)	528, 686
AxyI	CCTNAGG	1 cut(s)	468
BaeGI	GKGCMC	1 cut(s)	970
BanII	GRGCYC	2 cut(s)	110, 186
Bbv12I	GWGCWC	4 cut(s)	110, 186, 441, 1107
BbvI	GCAGC	5 cut(s)	486, 730, 964, 1069, 1152
BccI	CCATC	3 cut(s)	74, 329, 677
BceAI	ACGGC	1 cut(s)	811
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	3 cut(s)	344, 449, 875
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	2 cut(s)	316, 715
BcuI	ACTAGT	1 cut(s)	1115
BfaI	CTAG	7 cut(s)	63, 224, 717, 758, 815, 986, 1116
BfmI	CTRYAG	2 cut(s)	389, 840
BfoI	RGCGCY	1 cut(s)	1146
BfuI	GTATCC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	974
BisI	GCNGC	5 cut(s)	475, 744, 978, 1058, 1141
BlsI	GCNGC	5 cut(s)	476, 745, 979, 1059, 1142
BmcAI	AGTACT	1 cut(s)	505
Bme1390I	CCNGG	3 cut(s)	344, 449, 875
Bme18I	GGWCC	2 cut(s)	528, 686
BmgT120I	GGNCC	3 cut(s)	346, 528, 686
BmiI	GGNNCC	4 cut(s)	244, 446, 530, 730
BmrFI	CCNGG	3 cut(s)	344, 449, 875
BmsI	GCATC	3 cut(s)	177, 403, 1141
BplI	GAGNNNNNCTC	2 cut(s)	490, 522
BpmI	CTGGAG	2 cut(s)	34, 1073
BsaAI	YACGTR	1 cut(s)	923
BsaJI	CCNNGG	4 cut(s)	125, 343, 550, 733
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 448, 909, 1091
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	3 cut(s)	663, 697, 1056
Bse21I	CCTNAGG	1 cut(s)	468
BseBI	CCWGG	3 cut(s)	344, 449, 875
BseDI	CCNNGG	4 cut(s)	125, 343, 550, 733
BseGI	GGATG	3 cut(s)	85, 394, 688
BseLI	CCNNNNNNNGG	4 cut(s)	294, 448, 909, 1091
BseMII	CTCAG	2 cut(s)	171, 741
BseNI	ACTGG	3 cut(s)	663, 697, 1056
BseRI	GAGGAG	1 cut(s)	114
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	5 cut(s)	486, 730, 964, 1069, 1152
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	563
BshFI	GGCC	4 cut(s)	98, 348, 856, 948
BsiHKAI	GWGCWC	4 cut(s)	110, 186, 441, 1107
BsiSI	CCGG	1 cut(s)	442
BslFI	GGGAC	2 cut(s)	195, 579
BslI	CCNNNNNNNGG	4 cut(s)	294, 448, 909, 1091
BsmAI	GTCTC	2 cut(s)	316, 715
BsmFI	GGGAC	2 cut(s)	195, 579
BsnI	GGCC	4 cut(s)	98, 348, 856, 948
Bsp1286I	GDGCHC	5 cut(s)	110, 186, 441, 970, 1107
Bsp143I	GATC	3 cut(s)	24, 931, 1009
BspACI	CCGC	1 cut(s)	234
BspANI	GGCC	4 cut(s)	98, 348, 856, 948
BspCNI	CTCAG	2 cut(s)	172, 742
BspLI	GGNNCC	4 cut(s)	244, 446, 530, 730
BspPI	GGATC	2 cut(s)	926, 1004
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	3 cut(s)	663, 697, 1056
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	4 cut(s)	125, 343, 550, 733
BssMI	GATC	3 cut(s)	24, 931, 1009
BssT1I	CCWWGG	2 cut(s)	550, 733
Bst2UI	CCWGG	3 cut(s)	344, 449, 875
Bst4CI	ACNGT	1 cut(s)	1171
Bst6I	CTCTTC	1 cut(s)	314
BstBAI	YACGTR	1 cut(s)	923
BstC8I	GCNNGC	3 cut(s)	675, 858, 982
BstDEI	CTNAG	6 cut(s)	180, 427, 468, 750, 1014, 1131
BstF5I	GGATG	3 cut(s)	85, 394, 688
BstH2I	RGCGCY	1 cut(s)	1146
BstHHI	GCGC	1 cut(s)	1145
BstKTI	GATC	3 cut(s)	27, 934, 1012
BstMAI	GTCTC	2 cut(s)	316, 715
BstMBI	GATC	3 cut(s)	24, 931, 1009
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 659, 702, 974, 986, 1151
BstNI	CCWGG	3 cut(s)	344, 449, 875
BstNSI	RCATGY	1 cut(s)	1084
BstSCI	CCNGG	3 cut(s)	342, 447, 873
BstSFI	CTRYAG	2 cut(s)	389, 840
BstSLI	GKGCMC	1 cut(s)	970
BstV1I	GCAGC	5 cut(s)	486, 730, 964, 1069, 1152
BstX2I	RGATCY	1 cut(s)	931
BstYI	RGATCY	1 cut(s)	931
Bsu36I	CCTNAGG	1 cut(s)	468
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	4 cut(s)	98, 348, 856, 948
BtsCI	GGATG	3 cut(s)	85, 394, 688
BtsIMutI	CAGTG	2 cut(s)	177, 1049
Cac8I	GCNNGC	3 cut(s)	675, 858, 982
CfoI	GCGC	1 cut(s)	1145
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	3 cut(s)	346, 528, 686
CsiI	ACCWGGT	1 cut(s)	873
Csp6I	GTAC	5 cut(s)	221, 273, 504, 754, 1018
CviAII	CATG	8 cut(s)	112, 304, 463, 478, 707, 1030, 1081, 1109
CviQI	GTAC	5 cut(s)	221, 273, 504, 754, 1018
DdeI	CTNAG	6 cut(s)	180, 427, 468, 750, 1014, 1131
DpnI	GATC	3 cut(s)	26, 933, 1011
DpnII	GATC	3 cut(s)	24, 931, 1009
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Ecl136II	GAGCTC	2 cut(s)	108, 184
Eco130I	CCWWGG	2 cut(s)	550, 733
Eco147I	AGGCCT	1 cut(s)	98
Eco24I	GRGCYC	2 cut(s)	110, 186
Eco47I	GGWCC	2 cut(s)	528, 686
Eco53kI	GAGCTC	2 cut(s)	108, 184
Eco57I	CTGAAG	1 cut(s)	1046
Eco81I	CCTNAGG	1 cut(s)	468
EcoICRI	GAGCTC	2 cut(s)	108, 184
EcoRII	CCWGG	3 cut(s)	342, 447, 873
EcoT14I	CCWWGG	2 cut(s)	550, 733
EcoT38I	GRGCYC	2 cut(s)	110, 186
ErhI	CCWWGG	2 cut(s)	550, 733
FaeI	CATG	8 cut(s)	115, 307, 466, 481, 710, 1033, 1084, 1112
FaqI	GGGAC	2 cut(s)	195, 579
FatI	CATG	8 cut(s)	111, 303, 462, 477, 706, 1029, 1080, 1108
Fnu4HI	GCNGC	5 cut(s)	475, 744, 978, 1058, 1141
FokI	GGATG	3 cut(s)	92, 381, 695
FriOI	GRGCYC	2 cut(s)	110, 186
Fsp4HI	GCNGC	5 cut(s)	475, 744, 978, 1058, 1141
FspBI	CTAG	7 cut(s)	63, 224, 717, 758, 815, 986, 1116
GlaI	GCGC	1 cut(s)	1144
GluI	GCNGC	5 cut(s)	475, 744, 978, 1058, 1141
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	34, 1073
HaeII	RGCGCY	1 cut(s)	1146
HaeIII	GGCC	4 cut(s)	98, 348, 856, 948
HapII	CCGG	1 cut(s)	442
HhaI	GCGC	1 cut(s)	1145
Hin1II	CATG	8 cut(s)	115, 307, 466, 481, 710, 1033, 1084, 1112
Hin6I	GCGC	1 cut(s)	1143
HinP1I	GCGC	1 cut(s)	1143
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	2 cut(s)	324, 638
HpaII	CCGG	1 cut(s)	442
HphI	GGTGA	2 cut(s)	319, 875
Hpy166II	GTNNAC	3 cut(s)	221, 363, 866
Hpy188I	TCNGA	2 cut(s)	129, 1098
Hpy188III	TCNNGA	8 cut(s)	63, 212, 496, 608, 749, 815, 828, 1064
Hpy8I	GTNNAC	3 cut(s)	221, 363, 866
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	5 cut(s)	51, 128, 224, 938, 1197
HpyCH4III	ACNGT	1 cut(s)	1171
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	6 cut(s)	148, 156, 560, 580, 1112, 1193
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 659, 702, 974, 986, 1151
HpyF3I	CTNAG	6 cut(s)	180, 427, 468, 750, 1014, 1131
HpySE526I	ACGT	1 cut(s)	922
Hsp92II	CATG	8 cut(s)	115, 307, 466, 481, 710, 1033, 1084, 1112
HspAI	GCGC	1 cut(s)	1143
Kzo9I	GATC	3 cut(s)	24, 931, 1009
LmnI	GCTCC	5 cut(s)	113, 450, 751, 1054, 1159
Lsp1109I	GCAGC	5 cut(s)	486, 730, 964, 1069, 1152
LweI	GCATC	3 cut(s)	177, 403, 1141
MabI	ACCWGGT	1 cut(s)	873
MaeI	CTAG	7 cut(s)	63, 224, 717, 758, 815, 986, 1116
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	4 cut(s)	17, 785, 1042, 1165
MalI	GATC	3 cut(s)	26, 933, 1011
MboI	GATC	3 cut(s)	24, 931, 1009
MboII	GAAGA	3 cut(s)	331, 443, 803
MflI	RGATCY	1 cut(s)	931
MhlI	GDGCHC	5 cut(s)	110, 186, 441, 970, 1107
MluCI	AATT	6 cut(s)	58, 157, 309, 410, 543, 1174
MlyI	GAGTC	2 cut(s)	318, 632
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	109, 135, 528, 672, 945
MseI	TTAA	1 cut(s)	1173
MslI	CAYNNNNRTG	1 cut(s)	994
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	1 cut(s)	442
MspR9I	CCNGG	3 cut(s)	344, 449, 875
MvaI	CCWGG	3 cut(s)	344, 449, 875
MwoI	GCNNNNNNNGC	6 cut(s)	290, 659, 702, 974, 986, 1151
NdeII	GATC	3 cut(s)	24, 931, 1009
NlaIII	CATG	8 cut(s)	115, 307, 466, 481, 710, 1033, 1084, 1112
NlaIV	GGNNCC	4 cut(s)	244, 446, 530, 730
NmuCI	GTSAC	1 cut(s)	785
NspI	RCATGY	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	98
PkrI	GCNGC	5 cut(s)	476, 745, 979, 1059, 1142
PleI	GAGTC	2 cut(s)	318, 632
PpsI	GAGTC	2 cut(s)	318, 632
Ppu21I	YACGTR	1 cut(s)	923
Psp124BI	GAGCTC	2 cut(s)	110, 186
Psp6I	CCWGG	3 cut(s)	342, 447, 873
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	3 cut(s)	342, 447, 873
PspN4I	GGNNCC	4 cut(s)	244, 446, 530, 730
PspPI	GGNCC	3 cut(s)	346, 528, 686
PsrI	GAACNNNNNNTAC	2 cut(s)	67, 99
PsuI	RGATCY	1 cut(s)	931
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	5 cut(s)	222, 274, 505, 755, 1019
RsaNI	GTAC	5 cut(s)	221, 273, 504, 754, 1018
RseI	CAYNNNNRTG	1 cut(s)	994
SacI	GAGCTC	2 cut(s)	110, 186
SaqAI	TTAA	1 cut(s)	1173
SatI	GCNGC	5 cut(s)	475, 744, 978, 1058, 1141
Sau3AI	GATC	3 cut(s)	24, 931, 1009
Sau96I	GGNCC	3 cut(s)	346, 528, 686
ScaI	AGTACT	1 cut(s)	505
SchI	GAGTC	2 cut(s)	318, 632
ScrFI	CCNGG	3 cut(s)	344, 449, 875
SduI	GDGCHC	5 cut(s)	110, 186, 441, 970, 1107
SexAI	ACCWGGT	1 cut(s)	873
SfaNI	GCATC	3 cut(s)	177, 403, 1141
SfcI	CTRYAG	2 cut(s)	389, 840
SinI	GGWCC	2 cut(s)	528, 686
SmiMI	CAYNNNNRTG	1 cut(s)	994
SpeI	ACTAGT	1 cut(s)	1115
Sse9I	AATT	6 cut(s)	58, 157, 309, 410, 543, 1174
SseBI	AGGCCT	1 cut(s)	98
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	628
SspMI	CTAG	7 cut(s)	63, 224, 717, 758, 815, 986, 1116
SstI	GAGCTC	2 cut(s)	110, 186
StuI	AGGCCT	1 cut(s)	98
StyD4I	CCNGG	3 cut(s)	342, 447, 873
StyI	CCWWGG	2 cut(s)	550, 733
TaaI	ACNGT	1 cut(s)	1171
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	3 cut(s)	104, 641, 937
TasI	AATT	6 cut(s)	58, 157, 309, 410, 543, 1174
TatI	WGTACW	3 cut(s)	220, 503, 1017
Tru1I	TTAA	1 cut(s)	1173
Tru9I	TTAA	1 cut(s)	1173
TscAI	CASTG	2 cut(s)	184, 1056
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	5 cut(s)	474, 743, 977, 1057, 1140
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	4 cut(s)	451, 554, 1046, 1050
TspGWI	ACGGA	2 cut(s)	197, 235
TspRI	CASTG	2 cut(s)	184, 1056
VpaK11BI	GGWCC	2 cut(s)	528, 686
XbaI	TCTAGA	2 cut(s)	62, 814
XceI	RCATGY	1 cut(s)	1084
XspI	CTAG	7 cut(s)	63, 224, 717, 758, 815, 986, 1116
ZrmI	AGTACT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.