Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0014885

Physical Location & Seq

Genomic Coordinates Forward (+)

16237685 .. 16240245

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13750.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGGGGTTTGCTGGAGCAACAGAATCAAGGCTGAAAGTCCTTCCAATACTGGATTCAATTCGAAAAATGGGAGTGGTTCAAGTAGCAGGGCCTCGTCAACTTCCATGCCCCTGACTCCTCGGAGCGAGGGTGAGATCTTACAATCCACTACTTTGAAGAGTATCAGCTTCAGTGAGCTCAAAACCGCCACAAGAAACTTCCGTCCTGACAGTGTGCTTGGAGATGGGGGTTTTGGTTCTGTTTTCAAAGGTTGGATGGATGAAAGTTCGCTTAAAGCGTCCAAGGCCGGGACTGGCATGGTGATCGCTGTGAAGAAACTCAACCAAGATGGATTCCAGGGTCACAAGGAATGGCTGACAGAAATCAACTATCTTGGTGAGCTGCATCATCCCAATCTTGTGAAACTCATTGGTTATTGCTTAGAGGATGATCACCGGCTCTTGGTTTACGAGTTCATGCCTAAGGGCAGCATGGAAAACCATCTATTCAGGAGAAGTTCTCACTTTCAACCACTTTCTTGGAGCCTCCGAATGACAATTGCCCTCGGCGCTGCAAAGGGACTTGCCTTTCTCCACAATGCTGAAAGACAAATCATACATCGTGACTTCAAGTCATCGAATATTTTGCTCGACTCGAACTACAATGCAAAGCTGTCTGATTTCGGGTTAGCCAGGGATGGGCCAACTGGTGACAAGAGCCACGTCTCTACTAGGGTCATTGGAACCCAGGGATATGCTGCTCCGGAGTATTTAGCCACAGGTCATCTTACTACCAAGAGTGACATATACAGTTTCGGAGTTGTTCTTCTAGAAATGTTATCTGGACGACGAGCTATAGATAAGAACAGGCCAACTGGAGAACACAATCTGGTGGAATGGGCAAAACCATACCTGAGAAACAAACGCCGAGTTTTCCGTGTCATTGATCCTCGCCTTGAAGGTCAGTACTCAGTCAGTCGTTCCCAAAAGGCTGCCGTCCTTGCACTTCAATGTCTTGCTGTAGATCCCAAGTACAGACCTGACATGAATGAAGTGGTAACTATACTGGAGGAACTTCAGGACACAAAGGGCATACCAAAAAGTACACAGAAAGAGCACAATGCAACTAGTCAAGGCCTTCCTAACGGTGCGCCTGACTCCAGCACAAGGAGTGTTGACGACGCTCTCAGCGTGACTGCTTATCCCCGGCCTTCCAGAAACCCACTTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

405

Amino Acids

44.65

Weight (kDa)

9.37

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02290 AT5G02290
fragaria_vesca	FvH4_6g13630 FvH4_6g13630
malus_domestica	MD04G1129600.v1.1 MD12G1142600.v1.1
prunus_persica	Prupe.6G255900_v2.0.a1
pyrus_communis	pycom04g11800 pycom12g13750
rosa_chinensis	RchiOBHm_Chr3g0466481
rosa_laevigata	RLG00000024570
rosa_multiflora	Rmu_sc0003332.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414430
rosa_rugosa	Rorug03G0082300
rosa_samantha	Rh3DG150900
rosa_wichuraiana	Rw3G012190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	742
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	2 cut(s)	920, 998
AcuI	CTGAAG	2 cut(s)	154, 1040
AfaI	GTAC	3 cut(s)	947, 1013, 1084
AfiI	CCNNNNNNNGG	4 cut(s)	288, 442, 678, 1146
AgsI	TTSAA	8 cut(s)	58, 81, 157, 247, 509, 610, 938, 989
AhdI	GACNNNNNGTC	1 cut(s)	610
AhlI	ACTAGT	1 cut(s)	1106
AjiI	CACGTC	1 cut(s)	703
AjnI	CCWGG	3 cut(s)	336, 671, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	38, 70
AluBI	AGCT	5 cut(s)	168, 178, 382, 652, 833
AluI	AGCT	5 cut(s)	168, 178, 382, 652, 833
Alw21I	GWGCWC	2 cut(s)	180, 1098
Alw26I	GTCTC	1 cut(s)	709
AlwI	GGATC	2 cut(s)	920, 998
Aor13HI	TCCGGA	1 cut(s)	742
AoxI	GGCC	6 cut(s)	90, 285, 680, 848, 1114, 1187
ApeKI	GCWGC	5 cut(s)	382, 468, 551, 737, 971
AspLEI	GCGC	2 cut(s)	551, 1132
AspS9I	GGNCC	2 cut(s)	90, 680
AsuC2I	CCSGG	2 cut(s)	289, 1186
AsuHPI	GGTGA	5 cut(s)	143, 313, 389, 425, 701
AsuII	TTCGAA	1 cut(s)	62
AxyI	CCTNAGG	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	180, 1098
BbvI	GCAGC	5 cut(s)	369, 480, 538, 724, 958
BccI	CCATC	5 cut(s)	218, 250, 323, 489, 671
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	4 cut(s)	286, 320, 607, 641
BciT130I	CCWGG	3 cut(s)	338, 673, 728
BclI	TGATCA	1 cut(s)	430
BcnI	CCSGG	2 cut(s)	289, 1186
BcoDI	GTCTC	1 cut(s)	709
BcuI	ACTAGT	1 cut(s)	1106
BfaI	CTAG	3 cut(s)	711, 809, 1107
BfmI	CTRYAG	2 cut(s)	834, 999
BfoI	RGCGCY	1 cut(s)	552
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	5 cut(s)	383, 469, 552, 738, 972
BlsI	GCNGC	5 cut(s)	384, 470, 553, 739, 973
BmcAI	AGTACT	1 cut(s)	947
Bme1390I	CCNGG	5 cut(s)	289, 338, 673, 728, 1186
BmeRI	GACNNNNNGTC	1 cut(s)	610
BmgBI	CACGTC	1 cut(s)	703
BmgT120I	GGNCC	2 cut(s)	90, 680
BmiI	GGNNCC	2 cut(s)	524, 724
BmrFI	CCNGG	5 cut(s)	289, 338, 673, 728, 1186
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	484, 516
BpmI	CTGGAG	4 cut(s)	34, 876, 1067, 1123
Bpu14I	TTCGAA	1 cut(s)	62
BpuMI	CCSGG	2 cut(s)	289, 1186
BsaJI	CCNNGG	8 cut(s)	119, 282, 337, 544, 672, 726, 727, 1184
BsaWI	WCCGGW	1 cut(s)	742
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 442, 678, 1146
Bse118I	RCCGGY	1 cut(s)	435
Bse1I	ACTGG	5 cut(s)	55, 298, 691, 859, 1050
Bse21I	CCTNAGG	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	742
BseBI	CCWGG	3 cut(s)	338, 673, 728
BseDI	CCNNGG	8 cut(s)	119, 282, 337, 544, 672, 726, 727, 1184
BseGI	GGATG	5 cut(s)	261, 265, 388, 433, 682
BseLI	CCNNNNNNNGG	4 cut(s)	288, 442, 678, 1146
BseMII	CTCAG	3 cut(s)	884, 963, 1180
BseNI	ACTGG	5 cut(s)	55, 298, 691, 859, 1050
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	5 cut(s)	369, 480, 538, 724, 958
BshFI	GGCC	6 cut(s)	92, 287, 682, 850, 1116, 1189
BsiHKAI	GWGCWC	2 cut(s)	180, 1098
BsiSI	CCGG	4 cut(s)	288, 436, 743, 1186
BslFI	GGGAC	2 cut(s)	304, 573
BslI	CCNNNNNNNGG	4 cut(s)	288, 442, 678, 1146
BsmAI	GTCTC	1 cut(s)	709
BsmBI	CGTCTC	1 cut(s)	709
BsmFI	GGGAC	2 cut(s)	304, 573
BsnI	GGCC	6 cut(s)	92, 287, 682, 850, 1116, 1189
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	180, 1098
Bsp13I	TCCGGA	1 cut(s)	742
Bsp143I	GATC	5 cut(s)	135, 303, 430, 925, 1003
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	6 cut(s)	92, 287, 682, 850, 1116, 1189
BspCNI	CTCAG	3 cut(s)	885, 962, 1179
BspEI	TCCGGA	1 cut(s)	742
BspLI	GGNNCC	2 cut(s)	524, 724
BspPI	GGATC	2 cut(s)	920, 998
BspT104I	TTCGAA	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	435
BsrI	ACTGG	5 cut(s)	55, 298, 691, 859, 1050
BssAI	RCCGGY	1 cut(s)	435
BssECI	CCNNGG	8 cut(s)	119, 282, 337, 544, 672, 726, 727, 1184
BssMI	GATC	5 cut(s)	135, 303, 430, 925, 1003
BssT1I	CCWWGG	1 cut(s)	282
Bst2UI	CCWGG	3 cut(s)	338, 673, 728
Bst4CI	ACNGT	3 cut(s)	212, 791, 1127
Bst6I	CTCTTC	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	421, 462, 893, 949, 1166
BstF5I	GGATG	5 cut(s)	261, 265, 388, 433, 682
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	551, 1132
BstKTI	GATC	5 cut(s)	138, 306, 433, 928, 1006
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	5 cut(s)	135, 303, 430, 925, 1003
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 548, 980
BstNI	CCWGG	3 cut(s)	338, 673, 728
BstSCI	CCNGG	5 cut(s)	287, 336, 671, 726, 1184
BstSFI	CTRYAG	2 cut(s)	834, 999
BstV1I	GCAGC	5 cut(s)	369, 480, 538, 724, 958
BstX2I	RGATCY	2 cut(s)	135, 1003
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	2 cut(s)	135, 1003
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	6 cut(s)	92, 287, 682, 850, 1116, 1189
BtrI	CACGTC	1 cut(s)	703
BtsCI	GGATG	5 cut(s)	261, 265, 388, 433, 682
BtsIMutI	CAGTG	2 cut(s)	178, 217
CfoI	GCGC	2 cut(s)	551, 1132
Cfr10I	RCCGGY	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	90, 680
CseI	GACGC	2 cut(s)	267, 1169
Csp6I	GTAC	3 cut(s)	946, 1012, 1083
CviAII	CATG	5 cut(s)	106, 298, 457, 472, 1024
CviQI	GTAC	3 cut(s)	946, 1012, 1083
DdeI	CTNAG	5 cut(s)	421, 462, 893, 949, 1166
DpnI	GATC	5 cut(s)	137, 305, 432, 927, 1005
DpnII	GATC	5 cut(s)	135, 303, 430, 925, 1003
DriI	GACNNNNNGTC	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	152
Eam1105I	GACNNNNNGTC	1 cut(s)	610
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	178
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	1116
Eco24I	GRGCYC	1 cut(s)	180
Eco53kI	GAGCTC	1 cut(s)	178
Eco57I	CTGAAG	2 cut(s)	154, 1040
Eco81I	CCTNAGG	1 cut(s)	462
EcoICRI	GAGCTC	1 cut(s)	178
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	3 cut(s)	336, 671, 726
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	282
Esp3I	CGTCTC	1 cut(s)	709
FaeI	CATG	5 cut(s)	109, 301, 460, 475, 1027
FaqI	GGGAC	2 cut(s)	304, 573
FatI	CATG	5 cut(s)	105, 297, 456, 471, 1023
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	5 cut(s)	383, 469, 552, 738, 972
FokI	GGATG	5 cut(s)	268, 272, 375, 440, 689
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	5 cut(s)	383, 469, 552, 738, 972
FspBI	CTAG	3 cut(s)	711, 809, 1107
GlaI	GCGC	2 cut(s)	550, 1131
GluI	GCNGC	5 cut(s)	383, 469, 552, 738, 972
GsuI	CTGGAG	4 cut(s)	34, 876, 1067, 1123
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	6 cut(s)	92, 287, 682, 850, 1116, 1189
HapII	CCGG	4 cut(s)	288, 436, 743, 1186
HgaI	GACGC	2 cut(s)	267, 1169
HhaI	GCGC	2 cut(s)	551, 1132
Hin1II	CATG	5 cut(s)	109, 301, 460, 475, 1027
Hin6I	GCGC	2 cut(s)	549, 1130
HinP1I	GCGC	2 cut(s)	549, 1130
HincII	GTYRAC	2 cut(s)	99, 1156
HindII	GTYRAC	2 cut(s)	99, 1156
HinfI	GANTC	6 cut(s)	24, 54, 115, 333, 632, 1136
HpaII	CCGG	4 cut(s)	288, 436, 743, 1186
HphI	GGTGA	5 cut(s)	143, 313, 389, 425, 701
Hpy166II	GTNNAC	4 cut(s)	99, 448, 1085, 1156
Hpy188I	TCNGA	4 cut(s)	123, 530, 658, 797
Hpy188III	TCNNGA	8 cut(s)	206, 490, 602, 743, 809, 822, 1058, 1194
Hpy8I	GTNNAC	4 cut(s)	99, 448, 1085, 1156
Hpy99I	CGWCG	2 cut(s)	831, 1163
HpyAV	CCTTC	4 cut(s)	51, 932, 1127, 1200
HpyCH4III	ACNGT	3 cut(s)	212, 791, 1127
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	5 cut(s)	385, 554, 647, 983, 1103
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 548, 980
HpyF3I	CTNAG	5 cut(s)	421, 462, 893, 949, 1166
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	5 cut(s)	109, 301, 460, 475, 1027
HspAI	GCGC	2 cut(s)	549, 1130
Kpn2I	TCCGGA	1 cut(s)	742
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	5 cut(s)	135, 303, 430, 925, 1003
LmnI	GCTCC	4 cut(s)	15, 123, 522, 745
Lsp1109I	GCAGC	5 cut(s)	369, 480, 538, 724, 958
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	3 cut(s)	711, 809, 1107
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	6 cut(s)	341, 602, 689, 779, 1036, 1171
MalI	GATC	5 cut(s)	137, 305, 432, 927, 1005
MboI	GATC	5 cut(s)	135, 303, 430, 925, 1003
MboII	GAAGA	3 cut(s)	169, 325, 797
MfeI	CAATTG	1 cut(s)	537
MflI	RGATCY	2 cut(s)	135, 1003
MhlI	GDGCHC	2 cut(s)	180, 1098
MluCI	AATT	2 cut(s)	58, 537
MlyI	GAGTC	3 cut(s)	109, 626, 1130
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	8 cut(s)	103, 121, 129, 418, 536, 554, 939, 1042
MroI	TCCGGA	1 cut(s)	742
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	988
MspI	CCGG	4 cut(s)	288, 436, 743, 1186
MspR9I	CCNGG	5 cut(s)	289, 338, 673, 728, 1186
MunI	CAATTG	1 cut(s)	537
MvaI	CCWGG	3 cut(s)	338, 673, 728
MwoI	GCNNNNNNNGC	3 cut(s)	284, 548, 980
NciI	CCSGG	2 cut(s)	289, 1186
NdeII	GATC	5 cut(s)	135, 303, 430, 925, 1003
NlaIII	CATG	5 cut(s)	109, 301, 460, 475, 1027
NlaIV	GGNNCC	2 cut(s)	524, 724
NmeAIII	GCCGAG	2 cut(s)	525, 932
NmuCI	GTSAC	5 cut(s)	341, 602, 689, 779, 1171
NspV	TTCGAA	1 cut(s)	62
PasI	CCCWGGG	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	1116
PcsI	WCGNNNNNNNCGW	2 cut(s)	275, 1167
PfeI	GAWTC	3 cut(s)	24, 54, 333
PkrI	GCNGC	5 cut(s)	384, 470, 553, 739, 973
PleI	GAGTC	3 cut(s)	109, 626, 1130
PpsI	GAGTC	3 cut(s)	109, 626, 1130
Psp124BI	GAGCTC	1 cut(s)	180
Psp6I	CCWGG	3 cut(s)	336, 671, 726
PspGI	CCWGG	3 cut(s)	336, 671, 726
PspN4I	GGNNCC	2 cut(s)	524, 724
PspPI	GGNCC	2 cut(s)	90, 680
PsuI	RGATCY	2 cut(s)	135, 1003
RsaI	GTAC	3 cut(s)	947, 1013, 1084
RsaNI	GTAC	3 cut(s)	946, 1012, 1083
RseI	CAYNNNNRTG	1 cut(s)	988
SacI	GAGCTC	1 cut(s)	180
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	5 cut(s)	383, 469, 552, 738, 972
Sau3AI	GATC	5 cut(s)	135, 303, 430, 925, 1003
Sau96I	GGNCC	2 cut(s)	90, 680
ScaI	AGTACT	1 cut(s)	947
SchI	GAGTC	3 cut(s)	109, 626, 1130
ScrFI	CCNGG	5 cut(s)	289, 338, 673, 728, 1186
SduI	GDGCHC	2 cut(s)	180, 1098
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	2 cut(s)	834, 999
SfuI	TTCGAA	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	988
SpeI	ACTAGT	1 cut(s)	1106
Sse9I	AATT	2 cut(s)	58, 537
SseBI	AGGCCT	1 cut(s)	1116
SsiI	CCGC	1 cut(s)	186
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	3 cut(s)	711, 809, 1107
SstI	GAGCTC	1 cut(s)	180
StuI	AGGCCT	1 cut(s)	1116
StyD4I	CCNGG	5 cut(s)	287, 336, 671, 726, 1184
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	212, 791, 1127
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	4 cut(s)	62, 617, 630, 635
TasI	AATT	2 cut(s)	58, 537
TatI	WGTACW	3 cut(s)	945, 1011, 1082
TfiI	GAWTC	3 cut(s)	24, 54, 333
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	178, 217
TseFI	GTSAC	5 cut(s)	341, 602, 689, 779, 1171
TseI	GCWGC	5 cut(s)	382, 468, 551, 737, 971
Tsp45I	GTSAC	5 cut(s)	341, 602, 689, 779, 1171
TspDTI	ATGAA	4 cut(s)	276, 445, 1040, 1044
TspGWI	ACGGA	2 cut(s)	191, 905
TspRI	CASTG	2 cut(s)	178, 217
XbaI	TCTAGA	1 cut(s)	808
XspI	CTAG	3 cut(s)	711, 809, 1107
ZrmI	AGTACT	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.