MD12G1142600.v1.1
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
22187822 .. 22191167
3346 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1142600.v1.1.491

Sequence Viewer

Length: 1182 bp
ATGGGGGTTTGCTGGAGCAACAAAATCAAGGCTGAAAGTCCTTTCAATACAGGATTCAATTCGAAAAATGGGAGTGGTTCAAGTAGCAGGGCCTCGTCGACTTCCATGCCCCTGACTCCTCGGAGCGAGGGTGAGATCTTACAGTCCACTACTTTGAAGAGTGTCAGCTTCAGTGAGCTCAAAACCGCCACAAGAAACTTCCGTCCTGACAGTGTGCTTGGAGATGGGGGTTTTGGTTCTGTTTTCAAAGGTTGGATGGATGAAAGTTCGCTTAAAGCGTCCAAGGCCGGGACTGGCATGGTGATCGCTGTGAAGAAACTCAACCAAGATGGATTCCAGGGTCACAAGGAATGGCTGACAGAAATTAACTATCTTGGTGAGCTGCATCATCCCAATCTTGTGAAACTCATTGGTTATTGCTTAGAGGATGATCACCGGCTCTTGGTTTACGAGTTCATGCCTAAGGGCAGCATGGAAAACCATCTATTCAGGAGAAGTTCTCACTTTCAGCCACTTTCTTGGAGCCTCCGAATGAAAATTGCCCTCGGCGCTGCAAAGGGACTTGCCTTTCTCCACAATGCTGAAAGACAAATCATACATCGTGACTTCAAGTCATCGAATATTTTGCTCGACTCGAACTACAATGCAAAGCTGTCTGATTTCGGGTTAGCCAGGGATGGGCCAACTGGTGACAAGAGCCACGTCTCTACTAGGGTCATTGGAACCCAGGGATATGCTGCTCCGGAGTATTTAGCCACAGGTCATCTTACTACCAAGAGTGACATATACAGTTTCGGAGTTGTTCTTCTAGAAATGTTATCTGGACGACGAGCTATAGATAAGAACAGGCCAACTGGAGAACACAATCTGGTGGAATGGGCAAAACCATACTTGAGAAACAAACGCCGAGTTTTTCGTGTCATTGATCCCCGCCTTGAAGGCCAGTACTCAGTCAGTCGTTCCCAAAAGGCTGCCGTCCTTGCACTTCAATGTCTTGCTGTAGATCCCAAGTACAGACCTGACATGAATGAAGTGGTAACTATACTGGAGGAGCTTCAGGACACAAAGGACATTCCAAAAAGTACACAGAAAGAGCACAATGCAACTAGTCAAGGCCTTCCTAACGACGCTCCCAGCGTGACTGCTTATCCCCGGCCTTCCAGAAACCCACTTTTTGCTTGA

Protein Analysis

394

Amino Acids

43.66

Weight (kDa)

9.41

Isoelectric Point (pI)

42.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 70 - 346 2.4e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 71 - 348 2e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02290 AT5G02290
fragaria_vesca FvH4_6g13630 FvH4_6g13630
malus_domestica MD04G1129600.v1.1 MD12G1142600.v1.1
prunus_persica Prupe.6G255900_v2.0.a1
pyrus_communis pycom04g11800 pycom12g13750
rosa_chinensis RchiOBHm_Chr3g0466481
rosa_laevigata RLG00000024570
rosa_multiflora Rmu_sc0003332.1_g000021
rosa_roxburghii Rroxscaffold_6G00414430
rosa_rugosa Rorug03G0082300
rosa_samantha Rh3DG150900
rosa_wichuraiana Rw3G012190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AccIII TCCGGA 1 cut(s) 742
AciI CCGC 2 cut(s) 186, 931
AclWI GGATC 2 cut(s) 920, 998
AcuI CTGAAG 2 cut(s) 154, 1040
AfaI GTAC 3 cut(s) 947, 1013, 1084
AfiI CCNNNNNNNGG 3 cut(s) 288, 442, 678
AgsI TTSAA 8 cut(s) 46, 58, 81, 157, 247, 610, 938, 989
AhdI GACNNNNNGTC 1 cut(s) 610
AhlI ACTAGT 1 cut(s) 1106
AjiI CACGTC 1 cut(s) 703
AjnI CCWGG 3 cut(s) 336, 671, 726
AluBI AGCT 6 cut(s) 168, 178, 382, 652, 833, 1054
AluI AGCT 6 cut(s) 168, 178, 382, 652, 833, 1054
Alw21I GWGCWC 2 cut(s) 180, 1098
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 2 cut(s) 920, 998
Aor13HI TCCGGA 1 cut(s) 742
AoxI GGCC 7 cut(s) 90, 285, 680, 848, 940, 1114, 1154
ApeKI GCWGC 5 cut(s) 382, 468, 551, 737, 971
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 90, 680
AsuC2I CCSGG 2 cut(s) 289, 1153
AsuHPI GGTGA 5 cut(s) 143, 313, 389, 425, 701
AsuII TTCGAA 1 cut(s) 62
AxyI CCTNAGG 1 cut(s) 462
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 180, 1098
BbvI GCAGC 5 cut(s) 369, 480, 538, 724, 958
BccI CCATC 5 cut(s) 218, 250, 323, 489, 671
BceAI ACGGC 1 cut(s) 959
BcgI CGANNNNNNTGC 6 cut(s) 88, 122, 286, 320, 607, 641
BciT130I CCWGG 3 cut(s) 338, 673, 728
BclI TGATCA 1 cut(s) 430
BcnI CCSGG 2 cut(s) 289, 1153
BcoDI GTCTC 1 cut(s) 709
BcuI ACTAGT 1 cut(s) 1106
BfaI CTAG 3 cut(s) 711, 809, 1107
BfmI CTRYAG 2 cut(s) 834, 999
BfoI RGCGCY 1 cut(s) 552
BglI GCCNNNNNGGC 1 cut(s) 939
BglII AGATCT 1 cut(s) 135
BisI GCNGC 5 cut(s) 383, 469, 552, 738, 972
BlsI GCNGC 5 cut(s) 384, 470, 553, 739, 973
BmcAI AGTACT 1 cut(s) 947
Bme1390I CCNGG 5 cut(s) 289, 338, 673, 728, 1153
BmeRI GACNNNNNGTC 1 cut(s) 610
BmgBI CACGTC 1 cut(s) 703
BmgT120I GGNCC 2 cut(s) 90, 680
BmiI GGNNCC 2 cut(s) 524, 724
BmrFI CCNGG 5 cut(s) 289, 338, 673, 728, 1153
BmsI GCATC 1 cut(s) 394
BplI GAGNNNNNCTC 2 cut(s) 484, 516
BpmI CTGGAG 3 cut(s) 34, 876, 1067
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 913
BpuMI CCSGG 2 cut(s) 289, 1153
BsaJI CCNNGG 8 cut(s) 119, 282, 337, 544, 672, 726, 727, 1151
BsaWI WCCGGW 1 cut(s) 742
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 442, 678
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 5 cut(s) 298, 691, 859, 943, 1050
Bse21I CCTNAGG 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 742
BseBI CCWGG 3 cut(s) 338, 673, 728
BseDI CCNNGG 8 cut(s) 119, 282, 337, 544, 672, 726, 727, 1151
BseGI GGATG 5 cut(s) 261, 265, 388, 433, 682
BseLI CCNNNNNNNGG 3 cut(s) 288, 442, 678
BseMII CTCAG 1 cut(s) 963
BseNI ACTGG 5 cut(s) 298, 691, 859, 943, 1050
BseRI GAGGAG 2 cut(s) 108, 1064
BseXI GCAGC 5 cut(s) 369, 480, 538, 724, 958
BseYI CCCAGC 1 cut(s) 1133
BshFI GGCC 7 cut(s) 92, 287, 682, 850, 942, 1116, 1156
BsiHKAI GWGCWC 2 cut(s) 180, 1098
BsiSI CCGG 4 cut(s) 288, 436, 743, 1153
BslFI GGGAC 2 cut(s) 304, 573
BslI CCNNNNNNNGG 3 cut(s) 288, 442, 678
BsmAI GTCTC 1 cut(s) 709
BsmBI CGTCTC 1 cut(s) 709
BsmFI GGGAC 2 cut(s) 304, 573
BsnI GGCC 7 cut(s) 92, 287, 682, 850, 942, 1116, 1156
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 180, 1098
Bsp13I TCCGGA 1 cut(s) 742
Bsp143I GATC 5 cut(s) 135, 303, 430, 925, 1003
BspACI CCGC 2 cut(s) 186, 931
BspANI GGCC 7 cut(s) 92, 287, 682, 850, 942, 1116, 1156
BspCNI CTCAG 1 cut(s) 962
BspEI TCCGGA 1 cut(s) 742
BspLI GGNNCC 2 cut(s) 524, 724
BspPI GGATC 2 cut(s) 920, 998
BspT104I TTCGAA 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 5 cut(s) 298, 691, 859, 943, 1050
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 8 cut(s) 119, 282, 337, 544, 672, 726, 727, 1151
BssMI GATC 5 cut(s) 135, 303, 430, 925, 1003
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 3 cut(s) 338, 673, 728
Bst4CI ACNGT 3 cut(s) 144, 212, 791
Bst6I CTCTTC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 421, 462, 949
BstF5I GGATG 5 cut(s) 261, 265, 388, 433, 682
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 5 cut(s) 138, 306, 433, 928, 1006
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 5 cut(s) 135, 303, 430, 925, 1003
BstMWI GCNNNNNNNGC 4 cut(s) 284, 548, 939, 980
BstNI CCWGG 3 cut(s) 338, 673, 728
BstSCI CCNGG 5 cut(s) 287, 336, 671, 726, 1151
BstSFI CTRYAG 2 cut(s) 834, 999
BstV1I GCAGC 5 cut(s) 369, 480, 538, 724, 958
BstX2I RGATCY 2 cut(s) 135, 1003
BstXI CCANNNNNNTGG 1 cut(s) 519
BstYI RGATCY 2 cut(s) 135, 1003
Bsu36I CCTNAGG 1 cut(s) 462
BsuRI GGCC 7 cut(s) 92, 287, 682, 850, 942, 1116, 1156
BtrI CACGTC 1 cut(s) 703
BtsCI GGATG 5 cut(s) 261, 265, 388, 433, 682
BtsIMutI CAGTG 2 cut(s) 178, 217
CfoI GCGC 1 cut(s) 551
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 90, 680
CseI GACGC 2 cut(s) 267, 1136
Csp6I GTAC 3 cut(s) 946, 1012, 1083
CviAII CATG 5 cut(s) 106, 298, 457, 472, 1024
CviQI GTAC 3 cut(s) 946, 1012, 1083
DdeI CTNAG 3 cut(s) 421, 462, 949
DpnI GATC 5 cut(s) 137, 305, 432, 927, 1005
DpnII GATC 5 cut(s) 135, 303, 430, 925, 1003
DriI GACNNNNNGTC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 152
Eam1105I GACNNNNNGTC 1 cut(s) 610
EarI CTCTTC 1 cut(s) 152
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 282
Eco147I AGGCCT 1 cut(s) 1116
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 2 cut(s) 154, 1040
Eco81I CCTNAGG 1 cut(s) 462
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 90
EcoRII CCWGG 3 cut(s) 336, 671, 726
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 282
Esp3I CGTCTC 1 cut(s) 709
FaeI CATG 5 cut(s) 109, 301, 460, 475, 1027
FaqI GGGAC 2 cut(s) 304, 573
FatI CATG 5 cut(s) 105, 297, 456, 471, 1023
FauI CCCGC 1 cut(s) 938
FbaI TGATCA 1 cut(s) 430
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 5 cut(s) 383, 469, 552, 738, 972
FokI GGATG 5 cut(s) 268, 272, 375, 440, 689
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 5 cut(s) 383, 469, 552, 738, 972
FspBI CTAG 3 cut(s) 711, 809, 1107
GlaI GCGC 1 cut(s) 550
GluI GCNGC 5 cut(s) 383, 469, 552, 738, 972
GsaI CCCAGC 1 cut(s) 1137
GsuI CTGGAG 3 cut(s) 34, 876, 1067
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 7 cut(s) 92, 287, 682, 850, 942, 1116, 1156
HapII CCGG 4 cut(s) 288, 436, 743, 1153
HgaI GACGC 2 cut(s) 267, 1136
HhaI GCGC 1 cut(s) 551
Hin1II CATG 5 cut(s) 109, 301, 460, 475, 1027
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 4 cut(s) 54, 115, 333, 632
HpaII CCGG 4 cut(s) 288, 436, 743, 1153
HphI GGTGA 5 cut(s) 143, 313, 389, 425, 701
Hpy166II GTNNAC 4 cut(s) 99, 147, 448, 1085
Hpy188I TCNGA 4 cut(s) 123, 530, 658, 797
Hpy188III TCNNGA 8 cut(s) 206, 490, 602, 743, 809, 822, 1058, 1161
Hpy8I GTNNAC 4 cut(s) 99, 147, 448, 1085
Hpy99I CGWCG 3 cut(s) 100, 831, 1130
HpyAV CCTTC 3 cut(s) 932, 1127, 1167
HpyCH4III ACNGT 3 cut(s) 144, 212, 791
HpyCH4IV ACGT 1 cut(s) 702
HpyCH4V TGCA 5 cut(s) 385, 554, 647, 983, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 548, 939, 980
HpyF3I CTNAG 3 cut(s) 421, 462, 949
HpySE526I ACGT 1 cut(s) 702
Hsp92II CATG 5 cut(s) 109, 301, 460, 475, 1027
HspAI GCGC 1 cut(s) 549
Kpn2I TCCGGA 1 cut(s) 742
Ksp22I TGATCA 1 cut(s) 430
Kzo9I GATC 5 cut(s) 135, 303, 430, 925, 1003
LmnI GCTCC 6 cut(s) 15, 123, 522, 745, 1051, 1135
Lsp1109I GCAGC 5 cut(s) 369, 480, 538, 724, 958
LweI GCATC 1 cut(s) 394
MaeI CTAG 3 cut(s) 711, 809, 1107
MaeII ACGT 1 cut(s) 702
MaeIII GTNAC 6 cut(s) 341, 602, 689, 779, 1036, 1138
MalI GATC 5 cut(s) 137, 305, 432, 927, 1005
MboI GATC 5 cut(s) 135, 303, 430, 925, 1003
MboII GAAGA 3 cut(s) 169, 325, 797
MflI RGATCY 2 cut(s) 135, 1003
MhlI GDGCHC 2 cut(s) 180, 1098
MluCI AATT 3 cut(s) 58, 363, 537
MlyI GAGTC 2 cut(s) 109, 626
MmeI TCCRAC 1 cut(s) 233
MnlI CCTC 7 cut(s) 103, 121, 129, 418, 536, 554, 1042
MroI TCCGGA 1 cut(s) 742
MseI TTAA 2 cut(s) 273, 366
MslI CAYNNNNRTG 1 cut(s) 988
MspI CCGG 4 cut(s) 288, 436, 743, 1153
MspR9I CCNGG 5 cut(s) 289, 338, 673, 728, 1153
MvaI CCWGG 3 cut(s) 338, 673, 728
MwoI GCNNNNNNNGC 4 cut(s) 284, 548, 939, 980
NciI CCSGG 2 cut(s) 289, 1153
NdeII GATC 5 cut(s) 135, 303, 430, 925, 1003
NlaIII CATG 5 cut(s) 109, 301, 460, 475, 1027
NlaIV GGNNCC 2 cut(s) 524, 724
NmeAIII GCCGAG 2 cut(s) 525, 932
NmuCI GTSAC 5 cut(s) 341, 602, 689, 779, 1138
NspV TTCGAA 1 cut(s) 62
PasI CCCWGGG 1 cut(s) 727
PceI AGGCCT 1 cut(s) 1116
PcsI WCGNNNNNNNCGW 2 cut(s) 275, 1134
PfeI GAWTC 2 cut(s) 54, 333
PkrI GCNGC 5 cut(s) 384, 470, 553, 739, 973
PleI GAGTC 2 cut(s) 109, 626
PpsI GAGTC 2 cut(s) 109, 626
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 3 cut(s) 336, 671, 726
PspFI CCCAGC 1 cut(s) 1133
PspGI CCWGG 3 cut(s) 336, 671, 726
PspN4I GGNNCC 2 cut(s) 524, 724
PspPI GGNCC 2 cut(s) 90, 680
PsuI RGATCY 2 cut(s) 135, 1003
RsaI GTAC 3 cut(s) 947, 1013, 1084
RsaNI GTAC 3 cut(s) 946, 1012, 1083
RseI CAYNNNNRTG 1 cut(s) 988
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 273, 366
SatI GCNGC 5 cut(s) 383, 469, 552, 738, 972
Sau3AI GATC 5 cut(s) 135, 303, 430, 925, 1003
Sau96I GGNCC 2 cut(s) 90, 680
ScaI AGTACT 1 cut(s) 947
SchI GAGTC 2 cut(s) 109, 626
ScrFI CCNGG 5 cut(s) 289, 338, 673, 728, 1153
SduI GDGCHC 2 cut(s) 180, 1098
SfaNI GCATC 1 cut(s) 394
SfcI CTRYAG 2 cut(s) 834, 999
SfuI TTCGAA 1 cut(s) 62
SmiMI CAYNNNNRTG 1 cut(s) 988
SmlI CTYRAG 1 cut(s) 892
SmoI CTYRAG 1 cut(s) 892
SpeI ACTAGT 1 cut(s) 1106
Sse9I AATT 3 cut(s) 58, 363, 537
SseBI AGGCCT 1 cut(s) 1116
SsiI CCGC 2 cut(s) 186, 931
SspI AATATT 1 cut(s) 622
SspMI CTAG 3 cut(s) 711, 809, 1107
SstI GAGCTC 1 cut(s) 180
StuI AGGCCT 1 cut(s) 1116
StyD4I CCNGG 5 cut(s) 287, 336, 671, 726, 1151
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 3 cut(s) 144, 212, 791
TaiI ACGT 1 cut(s) 705
TaqI TCGA 5 cut(s) 62, 98, 617, 630, 635
TasI AATT 3 cut(s) 58, 363, 537
TatI WGTACW 3 cut(s) 945, 1011, 1082
TfiI GAWTC 2 cut(s) 54, 333
Tru1I TTAA 2 cut(s) 273, 366
Tru9I TTAA 2 cut(s) 273, 366
TscAI CASTG 2 cut(s) 178, 217
TseFI GTSAC 5 cut(s) 341, 602, 689, 779, 1138
TseI GCWGC 5 cut(s) 382, 468, 551, 737, 971
Tsp45I GTSAC 5 cut(s) 341, 602, 689, 779, 1138
TspDTI ATGAA 5 cut(s) 276, 445, 548, 1040, 1044
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 2 cut(s) 178, 217
XbaI TCTAGA 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 3 cut(s) 711, 809, 1107
ZrmI AGTACT 1 cut(s) 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.