Rroxscaffold_6G00414430
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
36776004 .. 36779296
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414430.1

Sequence Viewer

Length: 1254 bp
ATGGGGATTTGCTGGAGTAACAAGATCAAGTCTGTAAGTCCTTCTAATACAGCTCTGACTGAGTCTTTGGTGAAATGTCCAATTGCTTTTTCTGTAGGATACAATGGTTCAAGTAGCAAGGCCTCATCGAGCTCCATGCCTACAACTCCTCGGAGTGAGGGGGAGATTTTGCAATCCTGCAATTTGAACAGTATCAGCTTCAGTGAGCTCAAAAATGCTACAAGAAACTTCCGTCCTGATAGTGTACTAGGAGATGGCGGTTTTGGTTCCGTTTTCAAAGGTTGGATCGACGAGAGTATGCTTATAGCTACCAAGGCTGGGTCTGGCATGGTAATTGCTGTGAAGAGACTCAACCAAGATGGTTTCCAGGGCCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTACAGCATCCTAATCTTGTGAAATTGATTGGTTATTGCTTAGAGGATGAGCACCGGCTTCTGGTTTATGAGTTCATGCCTAAGGGCAGCATGGAAAATCATCTATTCAGGAGAAGTACTCACTTTCAGCCTCTTTCTTGGACCCTGCGAATGAAAATTGCCCTTGGTGCTGCAAAGGGACTTGCCTTTCTGCACAATGCTGAACAACAAGTCATACATCGTGACTTCAAGTCTGCCAACATTTTACTTGACTCGAACTACAATGCGAAGCTGGCTGATTTTGGGCTGGCGAGGGATGGACCAACTGGCGACAAAAGCCATGTCTCTACTAGGGTCATAGGAACCCAAGGATATGCTGCTCCCGAGTATCTAGCCACAGGTCATCTTACTGCCAAGAGTGACATATACAGCTTTGGAGTTGTTCTTCTAGAAATGTTATCTGGACGACGTGCTATAGATAGGAACAGGCCAACTGGTGAACACAACCTGGTAGAATGGGCAAAACCGTACCTGGTTAACAAACGGCGAGTTTTACATGTTATAGACCCTCGACTTGAAGGCCAATACTCATTCAATCGAGCCCAAAAGGCTGCCAACCTAGCACTTCAGTGTCTTTCTACTGATTCTAAGTACAGGCCGGACATGAATGAAGTGGTAACTACACTGGAGCAGCTTCAGGACACAACAAAGGACATGCCCAAAGGTACTCAGAAAGAGCACCATGCAACTAGTAATGGACTTTCTAATAATGCACCTAGGTCTCACAGAAGCAACACCAATGATGCTCCCAATAGAGTAACTGTTAATTATCCAAGGCCTTCTGCAAACCCACTTTTTGCTTGA

Protein Analysis

417

Amino Acids

46.2

Weight (kDa)

9.27

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 80 - 356 1.5e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 81 - 359 3.4e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014885)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02290 AT5G02290
fragaria_vesca FvH4_6g13630 FvH4_6g13630
malus_domestica MD04G1129600.v1.1 MD12G1142600.v1.1
prunus_persica Prupe.6G255900_v2.0.a1
pyrus_communis pycom04g11800 pycom12g13750
rosa_chinensis RchiOBHm_Chr3g0466481
rosa_laevigata RLG00000024570
rosa_multiflora Rmu_sc0003332.1_g000021
rosa_roxburghii Rroxscaffold_6G00414430
rosa_rugosa Rorug03G0082300
rosa_samantha Rh3DG150900
rosa_wichuraiana Rw3G012190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 258
AclWI GGATC 1 cut(s) 293
AcuI CTGAAG 3 cut(s) 184, 1001, 1070
AfaI GTAC 5 cut(s) 246, 529, 920, 1043, 1117
AfiI CCNNNNNNNGG 2 cut(s) 318, 472
AflIII ACRYGT 1 cut(s) 946
AgsI TTSAA 6 cut(s) 111, 187, 277, 640, 968, 985
AhdI GACNNNNNGTC 1 cut(s) 640
AhlI ACTAGT 1 cut(s) 1139
AjiI CACGTC 1 cut(s) 860
AjnI CCWGG 3 cut(s) 366, 897, 921
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AleI CACNNNNGTG 1 cut(s) 1018
AluBI AGCT 9 cut(s) 53, 132, 198, 208, 308, 412, 682, 822, 1084
AluI AGCT 9 cut(s) 53, 132, 198, 208, 308, 412, 682, 822, 1084
Alw21I GWGCWC 4 cut(s) 134, 210, 465, 1131
Alw26I GTCTC 3 cut(s) 340, 739, 1176
AlwI GGATC 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 6 cut(s) 120, 370, 878, 970, 1046, 1226
ApeKI GCWGC 5 cut(s) 498, 581, 767, 1001, 1081
ArsI GACNNNNNNTTYG 4 cut(s) 49, 81, 717, 749
AspA2I CCTAGG 1 cut(s) 1166
AspS9I GGNCC 3 cut(s) 370, 552, 710
AsuHPI GGTGA 2 cut(s) 82, 899
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 2 cut(s) 552, 710
AvrII CCTAGG 1 cut(s) 1166
AxyI CCTNAGG 1 cut(s) 492
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BanII GRGCYC 3 cut(s) 134, 210, 994
Bbv12I GWGCWC 4 cut(s) 134, 210, 465, 1131
BbvI GCAGC 5 cut(s) 510, 568, 754, 988, 1093
BccI CCATC 3 cut(s) 248, 353, 701
BceAI ACGGC 1 cut(s) 950
BcgI CGANNNNNNTGC 2 cut(s) 118, 152
BciT130I CCWGG 3 cut(s) 368, 899, 923
BciVI GTATCC 1 cut(s) 92
BcoDI GTCTC 3 cut(s) 340, 739, 1176
BcuI ACTAGT 1 cut(s) 1139
BfaI CTAG 7 cut(s) 248, 741, 782, 839, 1010, 1140, 1167
BfmI CTRYAG 3 cut(s) 93, 413, 864
BfuI GTATCC 1 cut(s) 92
BglI GCCNNNNNGGC 1 cut(s) 998
BisI GCNGC 5 cut(s) 499, 582, 768, 1002, 1082
BlnI CCTAGG 1 cut(s) 1166
BlsI GCNGC 5 cut(s) 500, 583, 769, 1003, 1083
BmcAI AGTACT 1 cut(s) 529
Bme1390I CCNGG 3 cut(s) 368, 899, 923
Bme18I GGWCC 2 cut(s) 552, 710
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 773
BmgBI CACGTC 1 cut(s) 860
BmgT120I GGNCC 3 cut(s) 370, 552, 710
BmiI GGNNCC 3 cut(s) 268, 554, 754
BmrFI CCNGG 3 cut(s) 368, 899, 923
BmsI GCATC 2 cut(s) 427, 1183
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpmI CTGGAG 2 cut(s) 34, 1097
BsaI GGTCTC 1 cut(s) 1176
BsaJI CCNNGG 7 cut(s) 149, 312, 367, 574, 757, 1166, 1223
Bsc4I CCNNNNNNNGG 2 cut(s) 318, 472
Bse118I RCCGGY 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 721, 889, 1080
Bse21I CCTNAGG 1 cut(s) 492
BseBI CCWGG 3 cut(s) 368, 899, 923
BseDI CCNNGG 7 cut(s) 149, 312, 367, 574, 757, 1166, 1223
BseGI GGATG 3 cut(s) 418, 463, 712
BseLI CCNNNNNNNGG 2 cut(s) 318, 472
BseMII CTCAG 2 cut(s) 51, 1133
BseNI ACTGG 3 cut(s) 721, 889, 1080
BseRI GAGGAG 1 cut(s) 138
BseXI GCAGC 5 cut(s) 510, 568, 754, 988, 1093
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 587
BshFI GGCC 6 cut(s) 122, 372, 880, 972, 1048, 1228
BsiHKAI GWGCWC 4 cut(s) 134, 210, 465, 1131
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 466, 1049
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 2 cut(s) 318, 472
BsmAI GTCTC 3 cut(s) 340, 739, 1176
BsmFI GGGAC 1 cut(s) 603
BsnI GGCC 6 cut(s) 122, 372, 880, 972, 1048, 1228
Bso31I GGTCTC 1 cut(s) 1176
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 5 cut(s) 134, 210, 465, 994, 1131
Bsp143I GATC 2 cut(s) 24, 285
BspACI CCGC 1 cut(s) 258
BspANI GGCC 6 cut(s) 122, 372, 880, 972, 1048, 1228
BspCNI CTCAG 2 cut(s) 52, 1132
BspLI GGNNCC 3 cut(s) 268, 554, 754
BspPI GGATC 1 cut(s) 293
BspTNI GGTCTC 1 cut(s) 1176
BsrFI RCCGGY 1 cut(s) 465
BsrI ACTGG 3 cut(s) 721, 889, 1080
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 7 cut(s) 149, 312, 367, 574, 757, 1166, 1223
BssMI GATC 2 cut(s) 24, 285
BssT1I CCWWGG 5 cut(s) 312, 574, 757, 1166, 1223
Bst2UI CCWGG 3 cut(s) 368, 899, 923
Bst4CI ACNGT 3 cut(s) 191, 918, 1213
Bst6I CTCTTC 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 684, 699
BstDEI CTNAG 5 cut(s) 60, 451, 492, 1038, 1119
BstF5I GGATG 3 cut(s) 418, 463, 712
BstKTI GATC 2 cut(s) 27, 288
BstMAI GTCTC 3 cut(s) 340, 739, 1176
BstMBI GATC 2 cut(s) 24, 285
BstMWI GCNNNNNNNGC 6 cut(s) 314, 578, 683, 726, 998, 1010
BstNI CCWGG 3 cut(s) 368, 899, 923
BstNSI RCATGY 2 cut(s) 950, 1108
BstSCI CCNGG 3 cut(s) 366, 897, 921
BstSFI CTRYAG 3 cut(s) 93, 413, 864
BstV1I GCAGC 5 cut(s) 510, 568, 754, 988, 1093
Bsu36I CCTNAGG 1 cut(s) 492
BsuI GTATCC 1 cut(s) 92
BsuRI GGCC 6 cut(s) 122, 372, 880, 972, 1048, 1228
BtrI CACGTC 1 cut(s) 860
BtsCI GGATG 3 cut(s) 418, 463, 712
BtsIMutI CAGTG 3 cut(s) 208, 1025, 1073
Cac8I GCNNGC 2 cut(s) 684, 699
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 370, 552, 710
CsiI ACCWGGT 2 cut(s) 897, 921
Csp6I GTAC 5 cut(s) 245, 528, 919, 1042, 1116
CviAII CATG 9 cut(s) 136, 328, 487, 502, 731, 947, 1054, 1105, 1133
CviQI GTAC 5 cut(s) 245, 528, 919, 1042, 1116
DdeI CTNAG 5 cut(s) 60, 451, 492, 1038, 1119
DpnI GATC 2 cut(s) 26, 287
DpnII GATC 2 cut(s) 24, 285
DriI GACNNNNNGTC 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 338
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 338
Ecl136II GAGCTC 2 cut(s) 132, 208
Eco130I CCWWGG 5 cut(s) 312, 574, 757, 1166, 1223
Eco147I AGGCCT 2 cut(s) 122, 1228
Eco24I GRGCYC 3 cut(s) 134, 210, 994
Eco31I GGTCTC 1 cut(s) 1176
Eco47I GGWCC 2 cut(s) 552, 710
Eco53kI GAGCTC 2 cut(s) 132, 208
Eco57I CTGAAG 3 cut(s) 184, 1001, 1070
Eco81I CCTNAGG 1 cut(s) 492
Eco88I CYCGRG 1 cut(s) 773
EcoICRI GAGCTC 2 cut(s) 132, 208
EcoRII CCWGG 3 cut(s) 366, 897, 921
EcoT14I CCWWGG 5 cut(s) 312, 574, 757, 1166, 1223
EcoT38I GRGCYC 3 cut(s) 134, 210, 994
ErhI CCWWGG 5 cut(s) 312, 574, 757, 1166, 1223
FaeI CATG 9 cut(s) 139, 331, 490, 505, 734, 950, 1057, 1108, 1136
FaqI GGGAC 1 cut(s) 603
FatI CATG 9 cut(s) 135, 327, 486, 501, 730, 946, 1053, 1104, 1132
Fnu4HI GCNGC 5 cut(s) 499, 582, 768, 1002, 1082
FokI GGATG 3 cut(s) 405, 470, 719
FriOI GRGCYC 3 cut(s) 134, 210, 994
Fsp4HI GCNGC 5 cut(s) 499, 582, 768, 1002, 1082
FspBI CTAG 7 cut(s) 248, 741, 782, 839, 1010, 1140, 1167
GluI GCNGC 5 cut(s) 499, 582, 768, 1002, 1082
GsaI CCCAGC 1 cut(s) 321
GsuI CTGGAG 2 cut(s) 34, 1097
HaeIII GGCC 6 cut(s) 122, 372, 880, 972, 1048, 1228
HapII CCGG 2 cut(s) 466, 1049
Hin1II CATG 9 cut(s) 139, 331, 490, 505, 734, 950, 1057, 1108, 1136
HincII GTYRAC 2 cut(s) 387, 928
HindII GTYRAC 2 cut(s) 387, 928
HinfI GANTC 4 cut(s) 62, 348, 662, 1034
HpaI GTTAAC 1 cut(s) 928
HpaII CCGG 2 cut(s) 466, 1049
HphI GGTGA 2 cut(s) 82, 899
Hpy166II GTNNAC 4 cut(s) 245, 387, 890, 928
Hpy188I TCNGA 3 cut(s) 57, 153, 1122
Hpy188III TCNNGA 7 cut(s) 236, 520, 632, 773, 839, 852, 1088
Hpy8I GTNNAC 4 cut(s) 245, 387, 890, 928
Hpy99I CGWCG 2 cut(s) 293, 861
HpyAV CCTTC 3 cut(s) 51, 962, 1239
HpyCH4III ACNGT 3 cut(s) 191, 918, 1213
HpyCH4IV ACGT 1 cut(s) 859
HpyCH4V TGCA 7 cut(s) 172, 180, 584, 604, 1136, 1163, 1235
HpyF10VI GCNNNNNNNGC 6 cut(s) 314, 578, 683, 726, 998, 1010
HpyF3I CTNAG 5 cut(s) 60, 451, 492, 1038, 1119
HpySE526I ACGT 1 cut(s) 859
Hsp92II CATG 9 cut(s) 139, 331, 490, 505, 734, 950, 1057, 1108, 1136
KspAI GTTAAC 1 cut(s) 928
Kzo9I GATC 2 cut(s) 24, 285
LmnI GCTCC 4 cut(s) 137, 775, 1078, 1201
Lsp1109I GCAGC 5 cut(s) 510, 568, 754, 988, 1093
LweI GCATC 2 cut(s) 427, 1183
MabI ACCWGGT 2 cut(s) 897, 921
MaeI CTAG 7 cut(s) 248, 741, 782, 839, 1010, 1140, 1167
MaeII ACGT 1 cut(s) 859
MaeIII GTNAC 5 cut(s) 17, 632, 809, 1066, 1207
MalI GATC 2 cut(s) 26, 287
MboI GATC 2 cut(s) 24, 285
MboII GAAGA 2 cut(s) 355, 827
MfeI CAATTG 1 cut(s) 81
MhlI GDGCHC 5 cut(s) 134, 210, 465, 994, 1131
MluCI AATT 6 cut(s) 81, 181, 333, 434, 567, 1216
MlyI GAGTC 3 cut(s) 71, 342, 656
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 7 cut(s) 133, 151, 159, 448, 552, 696, 969
MseI TTAA 2 cut(s) 927, 1215
MslI CAYNNNNRTG 1 cut(s) 1018
MspI CCGG 2 cut(s) 466, 1049
MspR9I CCNGG 3 cut(s) 368, 899, 923
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 3 cut(s) 368, 899, 923
MwoI GCNNNNNNNGC 6 cut(s) 314, 578, 683, 726, 998, 1010
NdeII GATC 2 cut(s) 24, 285
NlaIII CATG 9 cut(s) 139, 331, 490, 505, 734, 950, 1057, 1108, 1136
NlaIV GGNNCC 3 cut(s) 268, 554, 754
NmuCI GTSAC 2 cut(s) 632, 809
NspI RCATGY 2 cut(s) 950, 1108
OliI CACNNNNGTG 1 cut(s) 1018
PceI AGGCCT 2 cut(s) 122, 1228
PciI ACATGT 1 cut(s) 946
PfeI GAWTC 1 cut(s) 1034
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 5 cut(s) 500, 583, 769, 1003, 1083
PleI GAGTC 3 cut(s) 70, 342, 656
PpsI GAGTC 3 cut(s) 70, 342, 656
PscI ACATGT 1 cut(s) 946
Psp124BI GAGCTC 2 cut(s) 134, 210
Psp6I CCWGG 3 cut(s) 366, 897, 921
PspFI CCCAGC 1 cut(s) 317
PspGI CCWGG 3 cut(s) 366, 897, 921
PspN4I GGNNCC 3 cut(s) 268, 554, 754
PspPI GGNCC 3 cut(s) 370, 552, 710
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 5 cut(s) 246, 529, 920, 1043, 1117
RsaNI GTAC 5 cut(s) 245, 528, 919, 1042, 1116
RseI CAYNNNNRTG 1 cut(s) 1018
SacI GAGCTC 2 cut(s) 134, 210
SaqAI TTAA 2 cut(s) 927, 1215
SatI GCNGC 5 cut(s) 499, 582, 768, 1002, 1082
Sau3AI GATC 2 cut(s) 24, 285
Sau96I GGNCC 3 cut(s) 370, 552, 710
ScaI AGTACT 1 cut(s) 529
SchI GAGTC 3 cut(s) 71, 342, 656
ScrFI CCNGG 3 cut(s) 368, 899, 923
SduI GDGCHC 5 cut(s) 134, 210, 465, 994, 1131
SexAI ACCWGGT 2 cut(s) 897, 921
SfaNI GCATC 2 cut(s) 427, 1183
SfcI CTRYAG 3 cut(s) 93, 413, 864
SinI GGWCC 2 cut(s) 552, 710
SmiMI CAYNNNNRTG 1 cut(s) 1018
SpeI ACTAGT 1 cut(s) 1139
Sse9I AATT 6 cut(s) 81, 181, 333, 434, 567, 1216
SseBI AGGCCT 2 cut(s) 122, 1228
SsiI CCGC 1 cut(s) 258
SspMI CTAG 7 cut(s) 248, 741, 782, 839, 1010, 1140, 1167
SstI GAGCTC 2 cut(s) 134, 210
StuI AGGCCT 2 cut(s) 122, 1228
StyD4I CCNGG 3 cut(s) 366, 897, 921
StyI CCWWGG 5 cut(s) 312, 574, 757, 1166, 1223
TaaI ACNGT 3 cut(s) 191, 918, 1213
TaiI ACGT 1 cut(s) 862
TaqI TCGA 5 cut(s) 128, 288, 665, 961, 988
TasI AATT 6 cut(s) 81, 181, 333, 434, 567, 1216
TatI WGTACW 3 cut(s) 244, 527, 1041
TfiI GAWTC 1 cut(s) 1034
Tru1I TTAA 2 cut(s) 927, 1215
Tru9I TTAA 2 cut(s) 927, 1215
TscAI CASTG 3 cut(s) 208, 1025, 1080
TseFI GTSAC 2 cut(s) 632, 809
TseI GCWGC 5 cut(s) 498, 581, 767, 1001, 1081
Tsp45I GTSAC 2 cut(s) 632, 809
TspDTI ATGAA 4 cut(s) 475, 578, 1070, 1074
TspGWI ACGGA 2 cut(s) 221, 259
TspRI CASTG 3 cut(s) 208, 1025, 1080
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 552, 710
XbaI TCTAGA 1 cut(s) 838
XceI RCATGY 2 cut(s) 950, 1108
XmaJI CCTAGG 1 cut(s) 1166
XspI CTAG 7 cut(s) 248, 741, 782, 839, 1010, 1140, 1167
ZrmI AGTACT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.