Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014885

Physical Location & Seq

Genomic Coordinates Reverse (-)

12957178 .. 12960414

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG150900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGGATTTGCTGGAGTAACAAGATCAAGTCTGTAAGTCCTTCTAATACAGGATACAATGGTTCAAGTAGCAAGGCCTCATCGAGCTCCATGCCTACAACTCCTCGGAGTGAGGGGGAGATTTTGCAATCCTGCAATTTGAACAGTATCAGCTTCAGTGAGCTCAAAAATGCTACAAGAAACTTCCGTCCTGATAGTGTACTAGGAGATGGCGGTTTTGGGTCCGTTTTCAAAGGTTGGATCGACGAGAGTACGCTTATAGCTACCAAGGCTGGGTCTGGCATGGTAATTGCTGTGAAGAGACTCAACCAAGATGGTTTACAGGGCCACAAGGAATGGTTGACAGAAATCAACTATCTTGGACAGCTACAGCATCCTAATCTTGTGAAATTGATTGGTTATTGCTTAGAGGATGAGCACCGGCTCCTGGTTTATGAGTTCATGCCTAAGGGCAGCATGGAAAATCATCTATTCAGGAGAAGTACTCACTTTCAGCCTCTTTCTTGGACCCTGCGAATGAAAATTGCCCTTGGTGCTGCAAAGGGACTTGCCTTTCTGCACAATGCTGAACAACAAGTCATACATCGTGACTTCAAGTCTGCCAACATTTTGCTTGACTCGAACTACAATGCGAAGCTGGCTGATTTTGGGCTAGCGAGGGATGGACCAACTGGCGACAAAAGCCATGTCTCTACTAGGGTCATAGGAACCCAAGGATATGCTGCTCCCGAGTATCTAGCCACAGGTCATCTTACTGCCAAGAGTGACATATACAGCTTCGGAGTTGTTCTTCTAGAAATGTTATCTGGACGACGTGCTATAGATAGGAACAGACCAACTGGTGAACACAACCTGGTAGAATGGGCAAAACCGTACCTGGTTAGCAAACGGCGAGTTTTACATGTTATAGACCCTCGACTTGAAGGCCAATACTCATTCAATCGAGCCCAAAAGGCTGCCAACCTAGCACTTCAATGTCTTTCTACTGATTCTAAGTACAGGCCGGACATGAATGAAGTGGTAACTACACTGGAGCAGCTTCAGGACACAACAAAGGACATGCCCAAAGGTACTCAGAAAGAGCACCATGCAACTAGTAATGGACTTTCTAATAATGCACCTAGGTCTCACAGAAGCAGCACCAATGATGCTCCCAATAGAGTAACTGTTAATTATCCAAGGCCTTCTGCAAACCCACTTTTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

402

Amino Acids

44.52

Weight (kDa)

9.34

Isoelectric Point (pI)

40.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	65 - 341	1.5e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	66 - 344	2e-48	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014885)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02290 AT5G02290
fragaria_vesca	FvH4_6g13630 FvH4_6g13630
malus_domestica	MD04G1129600.v1.1 MD12G1142600.v1.1
prunus_persica	Prupe.6G255900_v2.0.a1
pyrus_communis	pycom04g11800 pycom12g13750
rosa_chinensis	RchiOBHm_Chr3g0466481
rosa_laevigata	RLG00000024570
rosa_multiflora	Rmu_sc0003332.1_g000021
rosa_roxburghii	Rroxscaffold_6G00414430
rosa_rugosa	Rorug03G0082300
rosa_samantha	Rh3DG150900
rosa_wichuraiana	Rw3G012190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	2 cut(s)	139, 1025
AfaI	GTAC	6 cut(s)	201, 253, 484, 875, 998, 1072
AfiI	CCNNNNNNNGG	2 cut(s)	273, 427
AflIII	ACRYGT	1 cut(s)	901
AgsI	TTSAA	7 cut(s)	66, 142, 232, 595, 923, 940, 974
AhdI	GACNNNNNGTC	1 cut(s)	595
AhlI	ACTAGT	1 cut(s)	1094
AjiI	CACGTC	1 cut(s)	815
AjnI	CCWGG	3 cut(s)	426, 852, 876
AluBI	AGCT	8 cut(s)	87, 153, 163, 263, 367, 637, 777, 1039
AluI	AGCT	8 cut(s)	87, 153, 163, 263, 367, 637, 777, 1039
Alw21I	GWGCWC	4 cut(s)	89, 165, 420, 1086
Alw26I	GTCTC	3 cut(s)	295, 694, 1131
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	728
AoxI	GGCC	5 cut(s)	75, 325, 925, 1001, 1181
ApeKI	GCWGC	6 cut(s)	453, 536, 722, 956, 1036, 1137
ArsI	GACNNNNNNTTYG	2 cut(s)	672, 704
AspA2I	CCTAGG	1 cut(s)	1121
AspS9I	GGNCC	4 cut(s)	222, 325, 507, 665
AsuHPI	GGTGA	1 cut(s)	854
AsuNHI	GCTAGC	1 cut(s)	652
AvaI	CYCGRG	1 cut(s)	728
AvaII	GGWCC	3 cut(s)	222, 507, 665
AvrII	CCTAGG	1 cut(s)	1121
AxyI	CCTNAGG	1 cut(s)	447
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BanII	GRGCYC	3 cut(s)	89, 165, 949
Bbv12I	GWGCWC	4 cut(s)	89, 165, 420, 1086
BbvI	GCAGC	6 cut(s)	465, 523, 709, 943, 1048, 1149
BccI	CCATC	3 cut(s)	203, 308, 656
BceAI	ACGGC	1 cut(s)	905
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BciT130I	CCWGG	3 cut(s)	428, 854, 878
BciVI	GTATCC	1 cut(s)	47
BcoDI	GTCTC	3 cut(s)	295, 694, 1131
BcuI	ACTAGT	1 cut(s)	1094
BfaI	CTAG	8 cut(s)	203, 653, 696, 737, 794, 965, 1095, 1122
BfmI	CTRYAG	2 cut(s)	368, 819
BfuI	GTATCC	1 cut(s)	47
BglI	GCCNNNNNGGC	1 cut(s)	953
BisI	GCNGC	6 cut(s)	454, 537, 723, 957, 1037, 1138
BlnI	CCTAGG	1 cut(s)	1121
BlsI	GCNGC	6 cut(s)	455, 538, 724, 958, 1038, 1139
BmcAI	AGTACT	1 cut(s)	484
Bme1390I	CCNGG	3 cut(s)	428, 854, 878
Bme18I	GGWCC	3 cut(s)	222, 507, 665
BmeRI	GACNNNNNGTC	1 cut(s)	595
BmeT110I	CYCGRG	1 cut(s)	728
BmgBI	CACGTC	1 cut(s)	815
BmgT120I	GGNCC	4 cut(s)	222, 325, 507, 665
BmiI	GGNNCC	4 cut(s)	223, 425, 509, 709
BmrFI	CCNGG	3 cut(s)	428, 854, 878
BmsI	GCATC	2 cut(s)	382, 1138
BmtI	GCTAGC	1 cut(s)	656
BplI	GAGNNNNNCTC	2 cut(s)	469, 501
BpmI	CTGGAG	2 cut(s)	34, 1052
BsaI	GGTCTC	1 cut(s)	1131
BsaJI	CCNNGG	6 cut(s)	104, 267, 529, 712, 1121, 1178
Bsc4I	CCNNNNNNNGG	2 cut(s)	273, 427
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	3 cut(s)	676, 844, 1035
Bse21I	CCTNAGG	1 cut(s)	447
BseBI	CCWGG	3 cut(s)	428, 854, 878
BseDI	CCNNGG	6 cut(s)	104, 267, 529, 712, 1121, 1178
BseGI	GGATG	3 cut(s)	373, 418, 667
BseLI	CCNNNNNNNGG	2 cut(s)	273, 427
BseMII	CTCAG	1 cut(s)	1088
BseNI	ACTGG	3 cut(s)	676, 844, 1035
BseRI	GAGGAG	1 cut(s)	93
BseXI	GCAGC	6 cut(s)	465, 523, 709, 943, 1048, 1149
BseYI	CCCAGC	1 cut(s)	272
BsgI	GTGCAG	1 cut(s)	542
BshFI	GGCC	5 cut(s)	77, 327, 927, 1003, 1183
BsiHKAI	GWGCWC	4 cut(s)	89, 165, 420, 1086
BsiHKCI	CYCGRG	1 cut(s)	728
BsiSI	CCGG	2 cut(s)	421, 1004
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	273, 427
BsmAI	GTCTC	3 cut(s)	295, 694, 1131
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	5 cut(s)	77, 327, 927, 1003, 1183
Bso31I	GGTCTC	1 cut(s)	1131
BsoBI	CYCGRG	1 cut(s)	728
Bsp1286I	GDGCHC	5 cut(s)	89, 165, 420, 949, 1086
Bsp143I	GATC	2 cut(s)	24, 240
BspACI	CCGC	1 cut(s)	213
BspANI	GGCC	5 cut(s)	77, 327, 927, 1003, 1183
BspCNI	CTCAG	1 cut(s)	1087
BspLI	GGNNCC	4 cut(s)	223, 425, 509, 709
BspOI	GCTAGC	1 cut(s)	656
BspPI	GGATC	1 cut(s)	248
BspTNI	GGTCTC	1 cut(s)	1131
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	676, 844, 1035
BssAI	RCCGGY	1 cut(s)	420
BssECI	CCNNGG	6 cut(s)	104, 267, 529, 712, 1121, 1178
BssMI	GATC	2 cut(s)	24, 240
BssT1I	CCWWGG	5 cut(s)	267, 529, 712, 1121, 1178
Bst2UI	CCWGG	3 cut(s)	428, 854, 878
Bst4CI	ACNGT	3 cut(s)	146, 873, 1168
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	639, 654
BstDEI	CTNAG	4 cut(s)	406, 447, 993, 1074
BstF5I	GGATG	3 cut(s)	373, 418, 667
BstKTI	GATC	2 cut(s)	27, 243
BstMAI	GTCTC	3 cut(s)	295, 694, 1131
BstMBI	GATC	2 cut(s)	24, 240
BstMWI	GCNNNNNNNGC	6 cut(s)	269, 533, 638, 681, 953, 965
BstNI	CCWGG	3 cut(s)	428, 854, 878
BstNSI	RCATGY	2 cut(s)	905, 1063
BstSCI	CCNGG	3 cut(s)	426, 852, 876
BstSFI	CTRYAG	2 cut(s)	368, 819
BstV1I	GCAGC	6 cut(s)	465, 523, 709, 943, 1048, 1149
Bsu36I	CCTNAGG	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	47
BsuRI	GGCC	5 cut(s)	77, 327, 927, 1003, 1183
BtrI	CACGTC	1 cut(s)	815
BtsCI	GGATG	3 cut(s)	373, 418, 667
BtsIMutI	CAGTG	2 cut(s)	163, 1028
Cac8I	GCNNGC	2 cut(s)	639, 654
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	4 cut(s)	222, 325, 507, 665
CsiI	ACCWGGT	2 cut(s)	852, 876
Csp6I	GTAC	6 cut(s)	200, 252, 483, 874, 997, 1071
CviAII	CATG	9 cut(s)	91, 283, 442, 457, 686, 902, 1009, 1060, 1088
CviQI	GTAC	6 cut(s)	200, 252, 483, 874, 997, 1071
DdeI	CTNAG	4 cut(s)	406, 447, 993, 1074
DpnI	GATC	2 cut(s)	26, 242
DpnII	GATC	2 cut(s)	24, 240
DriI	GACNNNNNGTC	1 cut(s)	595
Eam1104I	CTCTTC	1 cut(s)	293
Eam1105I	GACNNNNNGTC	1 cut(s)	595
EarI	CTCTTC	1 cut(s)	293
Ecl136II	GAGCTC	2 cut(s)	87, 163
Eco130I	CCWWGG	5 cut(s)	267, 529, 712, 1121, 1178
Eco147I	AGGCCT	2 cut(s)	77, 1183
Eco24I	GRGCYC	3 cut(s)	89, 165, 949
Eco31I	GGTCTC	1 cut(s)	1131
Eco47I	GGWCC	3 cut(s)	222, 507, 665
Eco53kI	GAGCTC	2 cut(s)	87, 163
Eco57I	CTGAAG	2 cut(s)	139, 1025
Eco81I	CCTNAGG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	728
EcoICRI	GAGCTC	2 cut(s)	87, 163
EcoRII	CCWGG	3 cut(s)	426, 852, 876
EcoT14I	CCWWGG	5 cut(s)	267, 529, 712, 1121, 1178
EcoT38I	GRGCYC	3 cut(s)	89, 165, 949
ErhI	CCWWGG	5 cut(s)	267, 529, 712, 1121, 1178
FaeI	CATG	9 cut(s)	94, 286, 445, 460, 689, 905, 1012, 1063, 1091
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	9 cut(s)	90, 282, 441, 456, 685, 901, 1008, 1059, 1087
Fnu4HI	GCNGC	6 cut(s)	454, 537, 723, 957, 1037, 1138
FokI	GGATG	3 cut(s)	360, 425, 674
FriOI	GRGCYC	3 cut(s)	89, 165, 949
Fsp4HI	GCNGC	6 cut(s)	454, 537, 723, 957, 1037, 1138
FspBI	CTAG	8 cut(s)	203, 653, 696, 737, 794, 965, 1095, 1122
GluI	GCNGC	6 cut(s)	454, 537, 723, 957, 1037, 1138
GsaI	CCCAGC	1 cut(s)	276
GsuI	CTGGAG	2 cut(s)	34, 1052
HaeIII	GGCC	5 cut(s)	77, 327, 927, 1003, 1183
HapII	CCGG	2 cut(s)	421, 1004
Hin1II	CATG	9 cut(s)	94, 286, 445, 460, 689, 905, 1012, 1063, 1091
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	3 cut(s)	303, 617, 989
HpaII	CCGG	2 cut(s)	421, 1004
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	4 cut(s)	200, 320, 342, 845
Hpy188I	TCNGA	3 cut(s)	108, 782, 1077
Hpy188III	TCNNGA	7 cut(s)	191, 475, 587, 728, 794, 807, 1043
Hpy8I	GTNNAC	4 cut(s)	200, 320, 342, 845
Hpy99I	CGWCG	2 cut(s)	248, 816
HpyAV	CCTTC	3 cut(s)	51, 917, 1194
HpyCH4III	ACNGT	3 cut(s)	146, 873, 1168
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	7 cut(s)	127, 135, 539, 559, 1091, 1118, 1190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	269, 533, 638, 681, 953, 965
HpyF3I	CTNAG	4 cut(s)	406, 447, 993, 1074
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	9 cut(s)	94, 286, 445, 460, 689, 905, 1012, 1063, 1091
Kzo9I	GATC	2 cut(s)	24, 240
LmnI	GCTCC	5 cut(s)	92, 429, 730, 1033, 1156
Lsp1109I	GCAGC	6 cut(s)	465, 523, 709, 943, 1048, 1149
LweI	GCATC	2 cut(s)	382, 1138
MabI	ACCWGGT	2 cut(s)	852, 876
MaeI	CTAG	8 cut(s)	203, 653, 696, 737, 794, 965, 1095, 1122
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	5 cut(s)	17, 587, 764, 1021, 1162
MalI	GATC	2 cut(s)	26, 242
MboI	GATC	2 cut(s)	24, 240
MboII	GAAGA	2 cut(s)	310, 782
MhlI	GDGCHC	5 cut(s)	89, 165, 420, 949, 1086
MluCI	AATT	5 cut(s)	136, 288, 389, 522, 1171
MlyI	GAGTC	2 cut(s)	297, 611
MmeI	TCCRAC	1 cut(s)	218
MnlI	CCTC	7 cut(s)	88, 106, 114, 403, 507, 651, 924
MseI	TTAA	1 cut(s)	1170
MslI	CAYNNNNRTG	1 cut(s)	973
MspI	CCGG	2 cut(s)	421, 1004
MspR9I	CCNGG	3 cut(s)	428, 854, 878
MvaI	CCWGG	3 cut(s)	428, 854, 878
MwoI	GCNNNNNNNGC	6 cut(s)	269, 533, 638, 681, 953, 965
NdeII	GATC	2 cut(s)	24, 240
NheI	GCTAGC	1 cut(s)	652
NlaIII	CATG	9 cut(s)	94, 286, 445, 460, 689, 905, 1012, 1063, 1091
NlaIV	GGNNCC	4 cut(s)	223, 425, 509, 709
NmuCI	GTSAC	2 cut(s)	587, 764
NspI	RCATGY	2 cut(s)	905, 1063
PceI	AGGCCT	2 cut(s)	77, 1183
PciI	ACATGT	1 cut(s)	901
PfeI	GAWTC	1 cut(s)	989
PkrI	GCNGC	6 cut(s)	455, 538, 724, 958, 1038, 1139
PleI	GAGTC	2 cut(s)	297, 611
PpsI	GAGTC	2 cut(s)	297, 611
PscI	ACATGT	1 cut(s)	901
Psp124BI	GAGCTC	2 cut(s)	89, 165
Psp6I	CCWGG	3 cut(s)	426, 852, 876
PspFI	CCCAGC	1 cut(s)	272
PspGI	CCWGG	3 cut(s)	426, 852, 876
PspN4I	GGNNCC	4 cut(s)	223, 425, 509, 709
PspPI	GGNCC	4 cut(s)	222, 325, 507, 665
RsaI	GTAC	6 cut(s)	201, 253, 484, 875, 998, 1072
RsaNI	GTAC	6 cut(s)	200, 252, 483, 874, 997, 1071
RseI	CAYNNNNRTG	1 cut(s)	973
SacI	GAGCTC	2 cut(s)	89, 165
SaqAI	TTAA	1 cut(s)	1170
SatI	GCNGC	6 cut(s)	454, 537, 723, 957, 1037, 1138
Sau3AI	GATC	2 cut(s)	24, 240
Sau96I	GGNCC	4 cut(s)	222, 325, 507, 665
ScaI	AGTACT	1 cut(s)	484
SchI	GAGTC	2 cut(s)	297, 611
ScrFI	CCNGG	3 cut(s)	428, 854, 878
SduI	GDGCHC	5 cut(s)	89, 165, 420, 949, 1086
SexAI	ACCWGGT	2 cut(s)	852, 876
SfaNI	GCATC	2 cut(s)	382, 1138
SfcI	CTRYAG	2 cut(s)	368, 819
SinI	GGWCC	3 cut(s)	222, 507, 665
SmiMI	CAYNNNNRTG	1 cut(s)	973
SpeI	ACTAGT	1 cut(s)	1094
Sse9I	AATT	5 cut(s)	136, 288, 389, 522, 1171
SseBI	AGGCCT	2 cut(s)	77, 1183
SsiI	CCGC	1 cut(s)	213
SspMI	CTAG	8 cut(s)	203, 653, 696, 737, 794, 965, 1095, 1122
SstI	GAGCTC	2 cut(s)	89, 165
StuI	AGGCCT	2 cut(s)	77, 1183
StyD4I	CCNGG	3 cut(s)	426, 852, 876
StyI	CCWWGG	5 cut(s)	267, 529, 712, 1121, 1178
TaaI	ACNGT	3 cut(s)	146, 873, 1168
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	5 cut(s)	83, 243, 620, 916, 943
TasI	AATT	5 cut(s)	136, 288, 389, 522, 1171
TatI	WGTACW	3 cut(s)	199, 482, 996
TfiI	GAWTC	1 cut(s)	989
Tru1I	TTAA	1 cut(s)	1170
Tru9I	TTAA	1 cut(s)	1170
TscAI	CASTG	2 cut(s)	163, 1035
TseFI	GTSAC	2 cut(s)	587, 764
TseI	GCWGC	6 cut(s)	453, 536, 722, 956, 1036, 1137
Tsp45I	GTSAC	2 cut(s)	587, 764
TspDTI	ATGAA	4 cut(s)	430, 533, 1025, 1029
TspGWI	ACGGA	2 cut(s)	176, 214
TspRI	CASTG	2 cut(s)	163, 1035
VpaK11BI	GGWCC	3 cut(s)	222, 507, 665
XbaI	TCTAGA	1 cut(s)	793
XceI	RCATGY	2 cut(s)	905, 1063
XmaJI	CCTAGG	1 cut(s)	1121
XspI	CTAG	8 cut(s)	203, 653, 696, 737, 794, 965, 1095, 1122
ZrmI	AGTACT	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.