FvH4_6g14040

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016878
Physical Location & Seq
Reverse (-)
8600241 .. 8600765
525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14040.t1

Sequence Viewer

Length: 525 bp
ATGGAAGAACCACACCGGCAGTTCCTCCACAGCCCGTTAATCATCGGCATTCTTGGTGTCGCAGCCGGAGCCATCATCGTTGCAACATACCACTGCCTAGTTAACAACTGTTGCTTCATCCAAAGCCGCATATCAAGTGCACTACAAAGCGAACAAACAGTACAAGTGCTTCCGACTACCAACCACAACAGGACTAGGTCGACCATTTCTACCAACACTACTATCCCTTCGCATTTGATTCCGGTTTATACATACACTAAGGAATGCAGGGAGGGAATGTGTGCCGTGTGCTTGTGTGACTTCGCCGACGGTGAGGCGATCCGGGTGCTGCCAGAATGCATGCACTTGTTTCATGTGGGATGCATTGATATGTGGCTGAACTCGCACACTAATTGCCCCTTATGTCGCACTGACATTATTCCCCGGCGGCAACATGTTACAGAAGAGAGGATTGAACCTGTAACCTATCCAGATCCAAACTCAATTTCTCAGCCTCCTCTGCAACACGTTGTGCTAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

175

Amino Acids

19.47

Weight (kDa)

6.17

Isoelectric Point (pI)

60.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-rbx1 PF12678 89 - 136 2.9e-08 RING-H2 zinc finger domain
zf-RING_2 PF13639 93 - 136 6.6e-13 Ring finger domain
zf-RING_11 PF17123 94 - 122 1.9e-09 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 200
AciI CCGC 2 cut(s) 127, 427
AclWI GGATC 2 cut(s) 313, 467
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 1 cut(s) 162
AflIII ACRYGT 2 cut(s) 433, 505
AgsI TTSAA 1 cut(s) 455
AjuI GAANNNNNNNTTGG 2 cut(s) 469, 501
Alw21I GWGCWC 1 cut(s) 142
Alw44I GTGCAC 1 cut(s) 138
AlwI GGATC 2 cut(s) 313, 467
ApaLI GTGCAC 1 cut(s) 138
ApeKI GCWGC 2 cut(s) 62, 328
AsuC2I CCSGG 2 cut(s) 323, 424
AsuHPI GGTGA 1 cut(s) 323
BaeGI GKGCMC 1 cut(s) 142
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 2 cut(s) 74, 315
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 269
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BcnI CCSGG 2 cut(s) 323, 424
BfaI CTAG 3 cut(s) 98, 195, 515
BisI GCNGC 4 cut(s) 63, 127, 329, 428
BlsI GCNGC 4 cut(s) 64, 128, 330, 429
Bme1390I CCNGG 2 cut(s) 323, 424
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 323, 424
BmsI GCATC 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 323, 424
BsaJI CCNNGG 1 cut(s) 422
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse118I RCCGGY 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 422
BseGI GGATG 2 cut(s) 117, 365
BseMII CTCAG 1 cut(s) 503
BseRI GAGGAG 1 cut(s) 486
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 2 cut(s) 74, 315
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 5 cut(s) 16, 66, 242, 322, 424
BsmI GAATGC 3 cut(s) 48, 269, 341
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 2 cut(s) 318, 472
BspACI CCGC 2 cut(s) 127, 427
BspCNI CTCAG 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 70
BspPI GGATC 2 cut(s) 313, 467
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 2 cut(s) 318, 472
Bst4CI ACNGT 3 cut(s) 110, 160, 311
Bst6I CTCTTC 1 cut(s) 438
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 2 cut(s) 258, 489
BstF5I GGATG 2 cut(s) 117, 365
BstKTI GATC 2 cut(s) 321, 475
BstMBI GATC 2 cut(s) 318, 472
BstMWI GCNNNNNNNGC 3 cut(s) 68, 382, 499
BstNSI RCATGY 2 cut(s) 343, 437
BstSCI CCNGG 2 cut(s) 321, 422
BstSLI GKGCMC 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 74, 315
BstX2I RGATCY 1 cut(s) 472
BstYI RGATCY 1 cut(s) 472
BtsCI GGATG 2 cut(s) 117, 365
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 91, 408
Cac8I GCNNGC 1 cut(s) 341
Cfr10I RCCGGY 1 cut(s) 15
Csp6I GTAC 1 cut(s) 161
CviAII CATG 3 cut(s) 340, 353, 434
CviJI RGCY 7 cut(s) 33, 65, 71, 126, 376, 493, 521
CviKI_1 RGCY 7 cut(s) 33, 65, 71, 126, 376, 493, 521
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 258, 489
DpnI GATC 2 cut(s) 320, 474
DpnII GATC 2 cut(s) 318, 472
DraIII CACNNNGTG 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 438
EarI CTCTTC 1 cut(s) 438
EcoT22I ATGCAT 2 cut(s) 341, 365
FaeI CATG 3 cut(s) 343, 356, 437
FaiI YATR 9 cut(s) 88, 131, 249, 253, 341, 354, 371, 403, 435
FatI CATG 3 cut(s) 339, 352, 433
FblI GTMKAC 1 cut(s) 200
Fnu4HI GCNGC 4 cut(s) 63, 127, 329, 428
FokI GGATG 2 cut(s) 104, 372
Fsp4HI GCNGC 4 cut(s) 63, 127, 329, 428
FspBI CTAG 3 cut(s) 98, 195, 515
GluI GCNGC 4 cut(s) 63, 127, 329, 428
HapII CCGG 5 cut(s) 16, 66, 242, 322, 424
Hin1II CATG 3 cut(s) 343, 356, 437
HincII GTYRAC 2 cut(s) 103, 201
HindII GTYRAC 2 cut(s) 103, 201
HinfI GANTC 1 cut(s) 238
HpaI GTTAAC 1 cut(s) 103
HpaII CCGG 5 cut(s) 16, 66, 242, 322, 424
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 3 cut(s) 103, 140, 201
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 470
Hpy8I GTNNAC 3 cut(s) 103, 140, 201
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 237
HpyCH4III ACNGT 3 cut(s) 110, 160, 311
HpyCH4IV ACGT 1 cut(s) 507
HpyCH4V TGCA 7 cut(s) 83, 140, 267, 339, 343, 363, 502
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 382, 499
HpyF3I CTNAG 2 cut(s) 258, 489
HpySE526I ACGT 1 cut(s) 507
Hsp92II CATG 3 cut(s) 343, 356, 437
KspAI GTTAAC 1 cut(s) 103
Kzo9I GATC 2 cut(s) 318, 472
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 2 cut(s) 74, 315
LweI GCATC 1 cut(s) 350
MaeI CTAG 3 cut(s) 98, 195, 515
MaeII ACGT 1 cut(s) 507
MaeIII GTNAC 3 cut(s) 296, 436, 460
MalI GATC 2 cut(s) 320, 474
MboI GATC 2 cut(s) 318, 472
MboII GAAGA 2 cut(s) 17, 455
MflI RGATCY 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 2 cut(s) 391, 483
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 6 cut(s) 35, 265, 307, 441, 504, 507
Mph1103I ATGCAT 2 cut(s) 341, 365
MseI TTAA 2 cut(s) 38, 102
MslI CAYNNNNRTG 1 cut(s) 368
MspI CCGG 5 cut(s) 16, 66, 242, 322, 424
MspR9I CCNGG 2 cut(s) 323, 424
Mva1269I GAATGC 3 cut(s) 48, 269, 341
MwoI GCNNNNNNNGC 3 cut(s) 68, 382, 499
NciI CCSGG 2 cut(s) 323, 424
NdeII GATC 2 cut(s) 318, 472
NlaIII CATG 3 cut(s) 343, 356, 437
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 296
NsiI ATGCAT 2 cut(s) 341, 365
NspI RCATGY 2 cut(s) 343, 437
PaeI GCATGC 1 cut(s) 343
PciI ACATGT 1 cut(s) 433
PctI GAATGC 3 cut(s) 48, 269, 341
PfeI GAWTC 1 cut(s) 238
PflFI GACNNNGTC 1 cut(s) 196
PkrI GCNGC 4 cut(s) 64, 128, 330, 429
PscI ACATGT 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 144, 176
PsuI RGATCY 1 cut(s) 472
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
RseI CAYNNNNRTG 1 cut(s) 368
SalI GTCGAC 1 cut(s) 199
SaqAI TTAA 2 cut(s) 38, 102
SatI GCNGC 4 cut(s) 63, 127, 329, 428
Sau3AI GATC 2 cut(s) 318, 472
ScrFI CCNGG 2 cut(s) 323, 424
SduI GDGCHC 1 cut(s) 142
SetI ASST 4 cut(s) 200, 460, 467, 510
SfaNI GCATC 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 368
SphI GCATGC 1 cut(s) 343
Sse9I AATT 2 cut(s) 391, 483
SsiI CCGC 2 cut(s) 127, 427
SspMI CTAG 3 cut(s) 98, 195, 515
StyD4I CCNGG 2 cut(s) 321, 422
TaaI ACNGT 3 cut(s) 110, 160, 311
TaiI ACGT 1 cut(s) 510
TaqI TCGA 1 cut(s) 200
TasI AATT 2 cut(s) 391, 483
TatI WGTACW 1 cut(s) 160
TauI GCSGC 2 cut(s) 129, 430
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 2 cut(s) 38, 102
Tru9I TTAA 2 cut(s) 38, 102
TscAI CASTG 2 cut(s) 98, 415
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 2 cut(s) 62, 328
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 106, 341
TspRI CASTG 2 cut(s) 98, 415
Tth111I GACNNNGTC 1 cut(s) 196
VneI GTGCAC 1 cut(s) 138
XceI RCATGY 2 cut(s) 343, 437
XmiI GTMKAC 1 cut(s) 200
XspI CTAG 3 cut(s) 98, 195, 515
Zsp2I ATGCAT 2 cut(s) 341, 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.