Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016878

Physical Location & Seq

Genomic Coordinates Forward (+)

24688193 .. 24688657

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G252800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGATTCATGGACGGAGGAGAGCCACGCCGGAGACGATTTGGGATTTGAGTTCGAGACACTTAAGCTCATAGGCTTCTTGTTGTGCCTTGCAATAGGGACCATCGTCGCTGTAACATATCAGTGCCTTGCCGTTGCTGACCAAAGGCGCATGCGAAACAACAACAACACACAGCAACAACAAAATGAACAGCAACCTCAGGGGCTTCAAATCAACCGACAGTTGATCCCAGTTGTCGAATACAGCAAAGAAAGCAAAGATGGGATTTGTGCTGTGTGCTTGTGTGAGTTCAAAGTTGGTGAGGCAATTCGTGTGTTGCCTGAATGCATGCACTTGTTTCATGCCGGCTGCATTGACATGTGTTTGAGCTCTCACTCTAATTGCCCACTTTGTCGTACTGATATTGAGCCGCGACATGTCGTTTTATTGGTGCCACAATTCAGAGGGGGAAACCTTAGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

155

Amino Acids

17.26

Weight (kDa)

5.27

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016878)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14040
malus_domestica	MD04G1125800.v1.1 MD12G1078800.v1.1
prunus_persica	Prupe.6G252700_v2.0.a1 Prupe.6G252800_v2.0.a1 Prupe.6G252900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466921
rosa_laevigata	RLG00000024545
rosa_multiflora	Rmu_sc0017982.1_g000001 Rmu_sc0023775.1_g000001 Rmu_sc0023776.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414060
rosa_rugosa	Rorug03G0084200
rosa_wichuraiana	Rw3G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AccII	CGCG	1 cut(s)	412
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	397
AflII	CTTAAG	1 cut(s)	62
AflIII	ACRYGT	2 cut(s)	357, 415
AgsI	TTSAA	2 cut(s)	209, 292
AluBI	AGCT	2 cut(s)	67, 369
AluI	AGCT	2 cut(s)	67, 369
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	2 cut(s)	27, 50
AlwI	GGATC	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	311
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	335
BccI	CCATC	2 cut(s)	110, 254
BceAI	ACGGC	1 cut(s)	116
BcoDI	GTCTC	2 cut(s)	27, 50
BfrI	CTTAAG	1 cut(s)	62
BisI	GCNGC	2 cut(s)	349, 410
BlsI	GCNGC	2 cut(s)	350, 411
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	2 cut(s)	100, 432
BmrI	ACTGGG	1 cut(s)	224
BmuI	ACTGGG	1 cut(s)	224
BoxI	GACNNNNGTC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	455
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	230
Bse21I	CCTNAGG	1 cut(s)	198
BseMII	CTCAG	1 cut(s)	212
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	1 cut(s)	335
Bsh1236I	CGCG	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	2 cut(s)	30, 345
BslFI	GGGAC	1 cut(s)	112
BsmAI	GTCTC	2 cut(s)	27, 50
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	1 cut(s)	225
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	412
BspLI	GGNNCC	2 cut(s)	100, 432
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	1 cut(s)	430
BspTI	CTTAAG	1 cut(s)	62
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	344
BssMI	GATC	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	62
BstC8I	GCNNGC	3 cut(s)	152, 329, 346
BstDEI	CTNAG	2 cut(s)	198, 455
BstFNI	CGCG	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	1 cut(s)	228
BstMAI	GTCTC	2 cut(s)	27, 50
BstMBI	GATC	1 cut(s)	225
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNSI	RCATGY	4 cut(s)	154, 331, 361, 419
BstPAI	GACNNNNGTC	1 cut(s)	104
BstUI	CGCG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	3 cut(s)	152, 329, 346
CfoI	GCGC	1 cut(s)	150
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	99
Csp6I	GTAC	1 cut(s)	396
CviAII	CATG	6 cut(s)	9, 151, 328, 341, 358, 416
CviJI	RGCY	7 cut(s)	24, 67, 75, 205, 348, 369, 409
CviKI_1	RGCY	7 cut(s)	24, 67, 75, 205, 348, 369, 409
CviQI	GTAC	1 cut(s)	396
DdeI	CTNAG	2 cut(s)	198, 455
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
Ecl136II	GAGCTC	1 cut(s)	369
Eco24I	GRGCYC	1 cut(s)	371
Eco47I	GGWCC	1 cut(s)	99
Eco53kI	GAGCTC	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	369
EcoT22I	ATGCAT	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	371
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	6 cut(s)	12, 154, 331, 344, 361, 419
FaiI	YATR	8 cut(s)	10, 71, 118, 152, 329, 342, 359, 417
FaqI	GGGAC	1 cut(s)	112
FatI	CATG	6 cut(s)	8, 150, 327, 340, 357, 415
Fnu4HI	GCNGC	2 cut(s)	349, 410
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	2 cut(s)	349, 410
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	2 cut(s)	349, 410
HapII	CCGG	2 cut(s)	30, 345
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	6 cut(s)	12, 154, 331, 344, 361, 419
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	2 cut(s)	30, 345
HphI	GGTGA	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	222
HpyCH4V	TGCA	4 cut(s)	92, 327, 331, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	198, 455
Hsp92II	CATG	6 cut(s)	12, 154, 331, 344, 361, 419
HspAI	GCGC	1 cut(s)	148
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	225
LpnPI	CCDG	5 cut(s)	43, 185, 243, 333, 358
Lsp1109I	GCAGC	1 cut(s)	335
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	3 cut(s)	306, 379, 437
MnlI	CCTC	4 cut(s)	10, 207, 295, 437
Mph1103I	ATGCAT	1 cut(s)	329
MroNI	GCCGGC	1 cut(s)	344
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	121, 356
MspCI	CTTAAG	1 cut(s)	62
MspI	CCGG	2 cut(s)	30, 345
Mva1269I	GAATGC	1 cut(s)	329
MvnI	CGCG	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	252
NaeI	GCCGGC	1 cut(s)	346
NdeII	GATC	1 cut(s)	225
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	6 cut(s)	12, 154, 331, 344, 361, 419
NlaIV	GGNNCC	2 cut(s)	100, 432
NsiI	ATGCAT	1 cut(s)	329
NspI	RCATGY	4 cut(s)	154, 331, 361, 419
PaeI	GCATGC	2 cut(s)	154, 331
PciI	ACATGT	2 cut(s)	357, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	329
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	350, 411
PscI	ACATGT	2 cut(s)	357, 415
PshAI	GACNNNNGTC	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	100, 432
PspPI	GGNCC	1 cut(s)	99
RsaI	GTAC	1 cut(s)	397
RsaNI	GTAC	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	121, 356
SacI	GAGCTC	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	2 cut(s)	349, 410
Sau3AI	GATC	1 cut(s)	225
Sau96I	GGNCC	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	4 cut(s)	69, 199, 371, 456
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	2 cut(s)	121, 356
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SphI	GCATGC	2 cut(s)	154, 331
Sse9I	AATT	3 cut(s)	306, 379, 437
SsiI	CCGC	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	371
TaaI	ACNGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	54, 237
TasI	AATT	3 cut(s)	306, 379, 437
TauI	GCSGC	1 cut(s)	412
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	1 cut(s)	348
TspDTI	ATGAA	2 cut(s)	201, 329
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	99
XceI	RCATGY	4 cut(s)	154, 331, 361, 419
Zsp2I	ATGCAT	1 cut(s)	329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.