Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0016878

Physical Location & Seq

Genomic Coordinates Forward (+)

36897199 .. 36897744

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024545

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAGAACCACACCGGCATTTCCTCTCCAGCCCGTTAATCATTGGCCTTCTCGGCGTCGCAGCCGGAGCCATCATCGTTGCAATATACCACTGCCTAGTCAACAACTGTTGCTTCATCCAAAGCCGCATATCAAGTGCACAACAAAGCGAACAAAGCCAAGTGCTTCCGACTACCAACCACAACAGGACTAGGAGCATTCCCACAAACACTTTCCCTGAGCATTTGATCCCGACTTACAGATACACCAAGGAATGCAGAGAGGGAATGTGTGCCGTGTGCTTGTGTGACTTCGCCGACGGCGAGGCGATTAGGGTGCTGCCCCAATGCATGCACTTGTTTCATGTGGCCTGCATTGATATGTGGTTGAACTCGCACACAAATTGCCCCTTATGTCGCACTGACATTATCCCTCGGCGCCAACAGGTTACAGTGGAGAGGATCGAAACTATAACCTATTCCGATCCTAACTCAATTTCTCAACCTCCGCTGCAACACGTTGTGCATGCACTTAGCGTAATACCAAATTTGGGTGGGATTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

182

Amino Acids

20.27

Weight (kDa)

6.53

Isoelectric Point (pI)

57.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	86 - 133	3.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	90 - 133	9.8e-13	Ring finger domain
zf-C3HC4_2	PF13923	90 - 132	1e-05	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	91 - 119	1.1e-09	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016878)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14040
malus_domestica	MD04G1125800.v1.1 MD12G1078800.v1.1
prunus_persica	Prupe.6G252700_v2.0.a1 Prupe.6G252800_v2.0.a1 Prupe.6G252900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466921
rosa_laevigata	RLG00000024545
rosa_multiflora	Rmu_sc0017982.1_g000001 Rmu_sc0023775.1_g000001 Rmu_sc0023776.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414060
rosa_rugosa	Rorug03G0084200
rosa_wichuraiana	Rw3G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	417
AciI	CCGC	2 cut(s)	127, 488
AclWI	GGATC	3 cut(s)	223, 449, 458
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	2 cut(s)	57, 418
AdeI	CACNNNGTG	1 cut(s)	502
AfiI	CCNNNNNNNGG	1 cut(s)	530
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	1 cut(s)	370
Alw21I	GWGCWC	1 cut(s)	142
Alw44I	GTGCAC	1 cut(s)	138
AlwI	GGATC	3 cut(s)	223, 449, 458
AoxI	GGCC	2 cut(s)	46, 348
ApaLI	GTGCAC	1 cut(s)	138
ApeKI	GCWGC	3 cut(s)	62, 319, 490
ApoI	RAATTY	1 cut(s)	526
AspLEI	GCGC	1 cut(s)	420
BaeGI	GKGCMC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	74, 306, 477
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	2 cut(s)	260, 316
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BfaI	CTAG	3 cut(s)	98, 192, 544
BfoI	RGCGCY	1 cut(s)	421
BglI	GCCNNNNNGGC	1 cut(s)	54
BisI	GCNGC	4 cut(s)	63, 127, 320, 491
BlsI	GCNGC	4 cut(s)	64, 128, 321, 492
BmiI	GGNNCC	2 cut(s)	70, 419
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	2 cut(s)	57, 418
BsaJI	CCNNGG	2 cut(s)	249, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	530
Bse118I	RCCGGY	1 cut(s)	15
BseDI	CCNNGG	2 cut(s)	249, 413
BseGI	GGATG	1 cut(s)	117
BseLI	CCNNNNNNNGG	1 cut(s)	530
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	142
BseXI	GCAGC	3 cut(s)	74, 306, 477
BshFI	GGCC	2 cut(s)	48, 350
BshNI	GGYRCC	1 cut(s)	417
BsiHKAI	GWGCWC	1 cut(s)	142
BsiSI	CCGG	2 cut(s)	16, 66
BslI	CCNNNNNNNGG	1 cut(s)	530
BsmI	GAATGC	2 cut(s)	198, 260
BsnI	GGCC	2 cut(s)	48, 350
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	228, 441, 463
BspACI	CCGC	2 cut(s)	127, 488
BspANI	GGCC	2 cut(s)	48, 350
BspCNI	CTCAG	1 cut(s)	211
BspLI	GGNNCC	2 cut(s)	70, 419
BspPI	GGATC	3 cut(s)	223, 449, 458
BspT107I	GGYRCC	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	15
BssAI	RCCGGY	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	249, 413
BssMI	GATC	3 cut(s)	228, 441, 463
BssNI	GRCGYC	2 cut(s)	57, 418
BssT1I	CCWWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	110, 433
BstACI	GRCGYC	2 cut(s)	57, 418
BstC8I	GCNNGC	3 cut(s)	332, 352, 507
BstDEI	CTNAG	2 cut(s)	219, 512
BstF5I	GGATG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	3 cut(s)	231, 444, 466
BstMBI	GATC	3 cut(s)	228, 441, 463
BstMWI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
BstNSI	RCATGY	2 cut(s)	334, 509
BstSLI	GKGCMC	1 cut(s)	142
BstV1I	GCAGC	3 cut(s)	74, 306, 477
BsuRI	GGCC	2 cut(s)	48, 350
BtsCI	GGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	3 cut(s)	91, 399, 438
Cac8I	GCNNGC	3 cut(s)	332, 352, 507
CfoI	GCGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	15
CseI	GACGC	1 cut(s)	46
CviAII	CATG	3 cut(s)	331, 344, 506
CviJI	RGCY	7 cut(s)	33, 48, 65, 71, 126, 159, 350
CviKI_1	RGCY	7 cut(s)	33, 48, 65, 71, 126, 159, 350
DdeI	CTNAG	2 cut(s)	219, 512
DinI	GGCGCC	1 cut(s)	419
DpnI	GATC	3 cut(s)	230, 443, 465
DpnII	GATC	3 cut(s)	228, 441, 463
DraIII	CACNNNGTG	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	332
EgeI	GGCGCC	1 cut(s)	419
EheI	GGCGCC	1 cut(s)	419
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	3 cut(s)	334, 347, 509
FaiI	YATR	8 cut(s)	88, 131, 332, 345, 362, 394, 452, 507
FatI	CATG	3 cut(s)	330, 343, 505
Fnu4HI	GCNGC	4 cut(s)	63, 127, 320, 491
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	4 cut(s)	63, 127, 320, 491
FspBI	CTAG	3 cut(s)	98, 192, 544
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	4 cut(s)	63, 127, 320, 491
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	48, 350
HapII	CCGG	2 cut(s)	16, 66
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	420
Hin1I	GRCGYC	2 cut(s)	57, 418
Hin1II	CATG	3 cut(s)	334, 347, 509
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HpaII	CCGG	2 cut(s)	16, 66
Hpy166II	GTNNAC	2 cut(s)	103, 140
Hpy188I	TCNGA	2 cut(s)	171, 463
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	103, 140
Hpy99I	CGWCG	2 cut(s)	62, 302
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	110, 433
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	9 cut(s)	83, 140, 258, 330, 334, 354, 493, 505, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
HpyF3I	CTNAG	2 cut(s)	219, 512
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	2 cut(s)	57, 418
Hsp92II	CATG	3 cut(s)	334, 347, 509
HspAI	GCGC	1 cut(s)	418
KasI	GGCGCC	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	228, 441, 463
LmnI	GCTCC	2 cut(s)	68, 195
LpnPI	CCDG	7 cut(s)	29, 43, 79, 172, 231, 364, 410
Lsp1109I	GCAGC	3 cut(s)	74, 306, 477
MaeI	CTAG	3 cut(s)	98, 192, 544
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	287, 427
MalI	GATC	3 cut(s)	230, 443, 465
MboI	GATC	3 cut(s)	228, 441, 463
MboII	GAAGA	1 cut(s)	17
MhlI	GDGCHC	1 cut(s)	142
MluCI	AATT	3 cut(s)	382, 474, 526
Mly113I	GGCGCC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	35, 256, 298, 423, 432, 495
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	1 cut(s)	38
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	490
MspI	CCGG	2 cut(s)	16, 66
Mva1269I	GAATGC	2 cut(s)	198, 260
MwoI	GCNNNNNNNGC	3 cut(s)	54, 68, 156
NarI	GGCGCC	1 cut(s)	418
NdeII	GATC	3 cut(s)	228, 441, 463
NlaIII	CATG	3 cut(s)	334, 347, 509
NlaIV	GGNNCC	2 cut(s)	70, 419
NmeAIII	GCCGAG	2 cut(s)	33, 394
NmuCI	GTSAC	1 cut(s)	287
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	2 cut(s)	334, 509
PaeI	GCATGC	2 cut(s)	334, 509
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PctI	GAATGC	2 cut(s)	198, 260
PkrI	GCNGC	4 cut(s)	64, 128, 321, 492
PluTI	GGCGCC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	70, 419
RseI	CAYNNNNRTG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	4 cut(s)	63, 127, 320, 491
Sau3AI	GATC	3 cut(s)	228, 441, 463
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	429, 458, 487, 501
SfoI	GGCGCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	359
SphI	GCATGC	2 cut(s)	334, 509
Sse9I	AATT	3 cut(s)	382, 474, 526
SsiI	CCGC	2 cut(s)	127, 488
SspDI	GGCGCC	1 cut(s)	417
SspMI	CTAG	3 cut(s)	98, 192, 544
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	2 cut(s)	110, 433
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	1 cut(s)	444
TasI	AATT	3 cut(s)	382, 474, 526
TauI	GCSGC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	3 cut(s)	98, 406, 438
TseFI	GTSAC	1 cut(s)	287
TseI	GCWGC	3 cut(s)	62, 319, 490
Tsp45I	GTSAC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	106, 332
TspRI	CASTG	3 cut(s)	98, 406, 438
VneI	GTGCAC	1 cut(s)	138
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	2 cut(s)	334, 509
XspI	CTAG	3 cut(s)	98, 192, 544
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.