Prupe.6G252700_v2.0.a1

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0016878
Physical Location & Seq
Forward (+)
24686962 .. 24687492
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G252700.1

Sequence Viewer

Length: 531 bp
ATGGACGGCGGAGGACCACCACACCGGAGATTCGAGCTCGGGCCAGAAATCATCGGTCTACTGGGTGTTTTCGCTGGAGTCATAGTTGTTGCCACATACCAATGCCTTGTCAACAACTGTTGTTGCAGTCAAAGGCGCATACAAAATGCAAACATACAACAACAACAACAACAACAACAAAATGAACAACAACGGCAGGGGATTCAAATCAACCCAAATATGCATAGGCCTCCTACAAGCAATAATCCTCCACCTGCCCATTTGATCCCAATTTTCAAATACACCAAAGAATGCAAGGAGGGAATTTGTGCTGTGTGCTTGTGTGAGTTCAGAGATGGTGAGACAATTCGTGTGCTGCCTGAATGCATGCACTTGTTTCATGCGGGTTGTATTGACATGTGGTTGAACTCCCACTCTAATTGCCCACTTTGTCGTACGGATATTGTTCCTCCGGGACATGTCGTTTTGTCGATGCCGCCTCCTCAACATGTCGTTTTGTCGATGCCGCATTTTAGTGGGGGAGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

177

Amino Acids

19.6

Weight (kDa)

6.73

Isoelectric Point (pI)

65.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccI GTMKAC 1 cut(s) 58
AciI CCGC 4 cut(s) 9, 383, 476, 506
AclWI GGATC 1 cut(s) 259
AcsI RAATTY 1 cut(s) 303
AfaI GTAC 1 cut(s) 436
AflIII ACRYGT 3 cut(s) 396, 457, 487
AgsI TTSAA 3 cut(s) 206, 277, 406
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 335, 516
AlwI GGATC 1 cut(s) 259
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 41, 227
ApeKI GCWGC 1 cut(s) 355
ApoI RAATTY 1 cut(s) 303
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 14, 41
AsuC2I CCSGG 1 cut(s) 453
AsuHPI GGTGA 1 cut(s) 350
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 342
BccI CCATC 1 cut(s) 329
BceAI ACGGC 2 cut(s) 22, 209
BcnI CCSGG 1 cut(s) 453
BcoDI GTCTC 2 cut(s) 335, 516
BfuAI ACCTGC 1 cut(s) 262
BisI GCNGC 3 cut(s) 356, 476, 506
BlsI GCNGC 3 cut(s) 357, 477, 507
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 14, 41
BmrFI CCNGG 1 cut(s) 453
BmrI ACTGGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 462, 492
BmuI ACTGGG 1 cut(s) 71
BpmI CTGGAG 1 cut(s) 96
BpuMI CCSGG 1 cut(s) 453
BsaBI GATNNNNATC 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 24
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 206
BseJI GATNNNNATC 1 cut(s) 206
BseNI ACTGG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 471
BseXI GCAGC 1 cut(s) 342
BshFI GGCC 2 cut(s) 43, 229
BsiHKAI GWGCWC 1 cut(s) 39
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 2 cut(s) 25, 452
BsiWI CGTACG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 468
BsmAI GTCTC 2 cut(s) 335, 516
BsmFI GGGAC 1 cut(s) 468
BsmI GAATGC 2 cut(s) 296, 368
BsnI GGCC 2 cut(s) 43, 229
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 4 cut(s) 9, 383, 476, 506
BspANI GGCC 2 cut(s) 43, 229
BspMI ACCTGC 1 cut(s) 262
BspPI GGATC 1 cut(s) 259
BsrI ACTGG 1 cut(s) 66
BssMI GATC 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 368
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 335, 516
BstMBI GATC 1 cut(s) 264
BstNSI RCATGY 4 cut(s) 370, 400, 461, 491
BstSCI CCNGG 1 cut(s) 451
BstV1I GCAGC 1 cut(s) 342
BsuRI GGCC 2 cut(s) 43, 229
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 368
CfoI GCGC 1 cut(s) 138
Cfr13I GGNCC 2 cut(s) 14, 41
Csp6I GTAC 1 cut(s) 435
CspCI CAANNNNNGTGG 2 cut(s) 401, 436
CviAII CATG 5 cut(s) 367, 380, 397, 458, 488
CviJI RGCY 3 cut(s) 37, 43, 229
CviKI_1 RGCY 3 cut(s) 37, 43, 229
CviQI GTAC 1 cut(s) 435
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 24
Ecl136II GAGCTC 1 cut(s) 37
Eco147I AGGCCT 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 14
Eco53kI GAGCTC 1 cut(s) 37
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 37
EcoT22I ATGCAT 2 cut(s) 225, 368
EcoT38I GRGCYC 1 cut(s) 39
FaeI CATG 5 cut(s) 370, 383, 400, 461, 491
FaqI GGGAC 1 cut(s) 468
FatI CATG 5 cut(s) 366, 379, 396, 457, 487
FauI CCCGC 1 cut(s) 376
FblI GTMKAC 1 cut(s) 58
Fnu4HI GCNGC 3 cut(s) 356, 476, 506
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 356, 476, 506
GlaI GCGC 1 cut(s) 137
GluI GCNGC 3 cut(s) 356, 476, 506
GsuI CTGGAG 1 cut(s) 96
HaeIII GGCC 2 cut(s) 43, 229
HapII CCGG 2 cut(s) 25, 452
HhaI GCGC 1 cut(s) 138
Hin1II CATG 5 cut(s) 370, 383, 400, 461, 491
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HinfI GANTC 3 cut(s) 30, 78, 202
HpaII CCGG 2 cut(s) 25, 452
HphI GGTGA 1 cut(s) 350
Hpy166II GTNNAC 2 cut(s) 59, 112
Hpy188I TCNGA 1 cut(s) 332
Hpy8I GTNNAC 2 cut(s) 59, 112
HpyCH4III ACNGT 1 cut(s) 119
HpyCH4V TGCA 6 cut(s) 126, 149, 223, 294, 366, 370
Hsp92II CATG 5 cut(s) 370, 383, 400, 461, 491
HspAI GCGC 1 cut(s) 136
Kzo9I GATC 1 cut(s) 264
LpnPI CCDG 8 cut(s) 38, 47, 57, 60, 182, 267, 372, 465
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 462, 492
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 4 cut(s) 270, 303, 345, 418
MlyI GAGTC 1 cut(s) 87
MnlI CCTC 7 cut(s) 5, 240, 258, 292, 459, 489, 492
Mph1103I ATGCAT 2 cut(s) 225, 368
MseI TTAA 1 cut(s) 529
MslI CAYNNNNRTG 2 cut(s) 100, 513
MspI CCGG 2 cut(s) 25, 452
MspR9I CCNGG 1 cut(s) 453
Mva1269I GAATGC 2 cut(s) 296, 368
NciI CCSGG 1 cut(s) 453
NdeII GATC 1 cut(s) 264
NlaIII CATG 5 cut(s) 370, 383, 400, 461, 491
NsiI ATGCAT 2 cut(s) 225, 368
NspI RCATGY 4 cut(s) 370, 400, 461, 491
PaeI GCATGC 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 262
PceI AGGCCT 1 cut(s) 229
PciI ACATGT 3 cut(s) 396, 457, 487
PctI GAATGC 2 cut(s) 296, 368
PfeI GAWTC 2 cut(s) 30, 202
Pfl23II CGTACG 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 451
PkrI GCNGC 3 cut(s) 357, 477, 507
PleI GAGTC 1 cut(s) 86
PpsI GAGTC 1 cut(s) 86
PscI ACATGT 3 cut(s) 396, 457, 487
Psp124BI GAGCTC 1 cut(s) 39
PspLI CGTACG 1 cut(s) 434
PspPI GGNCC 2 cut(s) 14, 41
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
RseI CAYNNNNRTG 2 cut(s) 100, 513
SacI GAGCTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 529
SatI GCNGC 3 cut(s) 356, 476, 506
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 2 cut(s) 14, 41
SchI GAGTC 1 cut(s) 87
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 39
SetI ASST 2 cut(s) 39, 256
SfaNI GCATC 2 cut(s) 462, 492
SinI GGWCC 1 cut(s) 14
SmiMI CAYNNNNRTG 2 cut(s) 100, 513
SphI GCATGC 1 cut(s) 370
Sse9I AATT 4 cut(s) 270, 303, 345, 418
SseBI AGGCCT 1 cut(s) 229
SsiI CCGC 4 cut(s) 9, 383, 476, 506
SstI GAGCTC 1 cut(s) 39
StuI AGGCCT 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 33, 470, 500
TaqII GACCGA 1 cut(s) 44
TasI AATT 4 cut(s) 270, 303, 345, 418
TauI GCSGC 2 cut(s) 478, 508
TfiI GAWTC 2 cut(s) 30, 202
Tru1I TTAA 1 cut(s) 529
Tru9I TTAA 1 cut(s) 529
TseI GCWGC 1 cut(s) 355
TspDTI ATGAA 2 cut(s) 198, 368
TspGWI ACGGA 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 14
XapI RAATTY 1 cut(s) 303
XceI RCATGY 4 cut(s) 370, 400, 461, 491
XmiI GTMKAC 1 cut(s) 58
Zsp2I ATGCAT 2 cut(s) 225, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.