Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016878

Physical Location & Seq

Genomic Coordinates Forward (+)

24689305 .. 24689781

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGACGGATTAGGGGGACCGCTTGACGTTAAGATGATAGTTCTCATAGGCATTTTGGCCCTTGCAGTTGCAATCATCGTTATTGTAACACATGCATGCCTTGCCGATGATGACGACGAGATTCATATCAATCGATATCGCAACAGGCCCCGGAGAACAAGAACACGAACAACAACAGAAACTAGAGCAACCACAACTACAATAAGCAATAGTTCTTCATCTGCACATCATCAGTTGATCCCAACTGTCGAAGAAATCAAAGATGGGATTTGTGCTGTGTGCTTGTGCGAGTTCAAAGATGGTGAGGCAATTCGTGTGCTGCCCGAATGCATGCACTTGTTTCATGCCGAGTGCATCGACATGTGGTTGAGCTCTCACTCTAATTGCCCACTTTGTCGCACAGATATTGAACCTCCTCCTCAACATGTCGTTCTGTCGATGCCAAGTTTCAGTGAGGGAGGCCTTGGGAGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

159

Amino Acids

17.32

Weight (kDa)

5.52

Isoelectric Point (pI)

59.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016878)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14040
malus_domestica	MD04G1125800.v1.1 MD12G1078800.v1.1
prunus_persica	Prupe.6G252700_v2.0.a1 Prupe.6G252800_v2.0.a1 Prupe.6G252900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0466921
rosa_laevigata	RLG00000024545
rosa_multiflora	Rmu_sc0017982.1_g000001 Rmu_sc0023775.1_g000001 Rmu_sc0023776.1_g000002
rosa_roxburghii	Rroxscaffold_6G00414060
rosa_rugosa	Rorug03G0084200
rosa_wichuraiana	Rw3G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	1 cut(s)	232
AflIII	ACRYGT	2 cut(s)	360, 424
AgsI	TTSAA	2 cut(s)	295, 410
AluBI	AGCT	1 cut(s)	372
AluI	AGCT	1 cut(s)	372
Alw21I	GWGCWC	2 cut(s)	374, 473
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	3 cut(s)	57, 146, 460
ApeKI	GCWGC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	17, 58, 147
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	374
Bbv12I	GWGCWC	2 cut(s)	374, 473
BbvI	GCAGC	1 cut(s)	306
BccI	CCATC	2 cut(s)	257, 293
BcnI	CCSGG	1 cut(s)	151
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	1 cut(s)	320
BlsI	GCNGC	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	17, 58, 147
BmiI	GGNNCC	2 cut(s)	18, 149
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	363, 429
BpuMI	CCSGG	1 cut(s)	151
Bsa29I	ATCGAT	1 cut(s)	133
BsaBI	GATNNNNATC	1 cut(s)	125
BsaJI	CCNNGG	2 cut(s)	149, 463
Bse8I	GATNNNNATC	1 cut(s)	125
BseCI	ATCGAT	1 cut(s)	133
BseDI	CCNNGG	2 cut(s)	149, 463
BseJI	GATNNNNATC	1 cut(s)	125
BseRI	GAGGAG	2 cut(s)	405, 408
BseXI	GCAGC	1 cut(s)	306
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	59, 148, 462
BshVI	ATCGAT	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	374, 473
BsiSI	CCGG	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	59, 148, 462
Bsp1286I	GDGCHC	2 cut(s)	374, 473
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	3 cut(s)	59, 148, 462
BspDI	ATCGAT	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	18, 149
BspPI	GGATC	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	149, 463
BssMI	GATC	1 cut(s)	237
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	1 cut(s)	247
BstAPI	GCANNNNNTGC	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	97, 332
BstKTI	GATC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	237
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 468
BstNSI	RCATGY	5 cut(s)	95, 99, 334, 364, 428
BstSCI	CCNGG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	306
Bsu15I	ATCGAT	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	59, 148, 462
BsuTUI	ATCGAT	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	457
Cac8I	GCNNGC	2 cut(s)	97, 332
Cfr13I	GGNCC	3 cut(s)	17, 58, 147
ClaI	ATCGAT	1 cut(s)	133
CviAII	CATG	6 cut(s)	92, 96, 331, 344, 361, 425
CviJI	RGCY	4 cut(s)	59, 148, 372, 462
CviKI_1	RGCY	4 cut(s)	59, 148, 372, 462
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Ecl136II	GAGCTC	1 cut(s)	372
Eco130I	CCWWGG	1 cut(s)	463
Eco147I	AGGCCT	1 cut(s)	462
Eco24I	GRGCYC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	17
Eco53kI	GAGCTC	1 cut(s)	372
EcoICRI	GAGCTC	1 cut(s)	372
EcoO109I	RGGNCCY	1 cut(s)	147
EcoRV	GATATC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	2 cut(s)	97, 332
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	6 cut(s)	95, 99, 334, 347, 364, 428
FaiI	YATR	8 cut(s)	47, 93, 97, 126, 332, 345, 362, 426
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	6 cut(s)	91, 95, 330, 343, 360, 424
Fnu4HI	GCNGC	1 cut(s)	320
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	320
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	320
HaeIII	GGCC	3 cut(s)	59, 148, 462
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	6 cut(s)	95, 99, 334, 347, 364, 428
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	1 cut(s)	151
HphI	GGTGA	1 cut(s)	314
Hpy99I	CGWCG	1 cut(s)	119
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	27
HpyCH4V	TGCA	7 cut(s)	65, 71, 95, 224, 330, 334, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 468
HpySE526I	ACGT	1 cut(s)	27
Hsp92II	CATG	6 cut(s)	95, 99, 334, 347, 364, 428
Kzo9I	GATC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	468
LpnPI	CCDG	2 cut(s)	130, 164
Lsp1109I	GCAGC	1 cut(s)	306
LweI	GCATC	2 cut(s)	363, 429
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	27
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	207, 263
MhlI	GDGCHC	2 cut(s)	374, 473
MluCI	AATT	2 cut(s)	309, 382
MnlI	CCTC	6 cut(s)	298, 423, 426, 429, 448, 452
Mph1103I	ATGCAT	2 cut(s)	97, 332
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	2 cut(s)	94, 359
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	101, 468
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	6 cut(s)	95, 99, 334, 347, 364, 428
NlaIV	GGNNCC	2 cut(s)	18, 149
NmeAIII	GCCGAG	1 cut(s)	373
NsiI	ATGCAT	2 cut(s)	97, 332
NspI	RCATGY	5 cut(s)	95, 99, 334, 364, 428
PaeI	GCATGC	2 cut(s)	99, 334
PceI	AGGCCT	1 cut(s)	462
PciI	ACATGT	2 cut(s)	360, 424
PctI	GAATGC	1 cut(s)	332
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	321
PscI	ACATGT	2 cut(s)	360, 424
Psp124BI	GAGCTC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	18, 149
PspPI	GGNCC	3 cut(s)	17, 58, 147
RseI	CAYNNNNRTG	2 cut(s)	94, 359
SacI	GAGCTC	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	320
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	3 cut(s)	17, 58, 147
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	374, 473
SetI	ASST	3 cut(s)	30, 374, 415
SfaNI	GCATC	2 cut(s)	363, 429
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	2 cut(s)	94, 359
SphI	GCATGC	2 cut(s)	99, 334
Sse9I	AATT	2 cut(s)	309, 382
SseBI	AGGCCT	1 cut(s)	462
SsiI	CCGC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	374
StuI	AGGCCT	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	30
TaqI	TCGA	4 cut(s)	133, 249, 357, 437
TasI	AATT	2 cut(s)	309, 382
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	457
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	3 cut(s)	113, 207, 332
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	1 cut(s)	457
VpaK11BI	GGWCC	1 cut(s)	17
XceI	RCATGY	5 cut(s)	95, 99, 334, 364, 428
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	2 cut(s)	97, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.