FvH4_6g14380

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0009698
Physical Location & Seq
Reverse (-)
8819347 .. 8823373
4027 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14380.t8

Sequence Viewer

Length: 1596 bp
ATGTCTTTTCAGAATCAGGGCTTTTGGATGGCAAAGGGTACCAGTGGTGTTAATGATGGTGAGAGGCTTTATGATAATTCTTCTACAACTGAGCCCAAGCGTTCTCATCAATGGTTCATGGATGGTCCTGTGGTAGAGTCATTCCCCAATAAGAGACAAGCTCTTGAAGTTCCAAGCACCAATCTATTTTCAGGCTTGTTAAATGCAAATGTTTCTCCATGGGGAAATGTTCCCAGTTTTCAGTCGTTCTCTGGCCAGTTCACTGAAAGGTTATTTGATTCTGAAGCAGACAGAGCGGTGAATTTTGAGGACAGAAACATGTCATCAGTTGGCTCAGAAAAATTGAGAAAAGTTAATGAGGATCTATTTGGGAATGATTCCTCATTTGGTTTATCTATGTCTCATTCACTGGAAGATCCTAGATTGAGTCCTAACTATGGTGGTTTTAGAAAAGTCAAAGTTAGTGAGGTCAAGGACTGTGAGAATGTCACGCGTGTTTCTGCCAGACATGCTTATAATCAGGGAGATAACGATGCCATGTTGGCACCTCATGTTTACAAGACGGATGACAACTCAGGATCAATGGGTGTCTCTTATAAGAAAGAGGATGAGAACTTCATATCTATGAGTGATTCCTATAACAGGGCAGATAACAATTTCAGATCAATGGGACAACCCTTTACTAAAGGGGATGAGTACATTGGAATTGGTCAGACATACAAGGAGAATAACAATACTCTACTGACGGGTCGAACACTGAACAAGGGTGACAGTACTATCATCTCGATCGGTGAAACCTACAACAAGGCAGATGAAAGCACCATTTCAACCAGTCATATATATAATAAAGGGGAAGACATATCAATGGGTCATGACTATAGTAAGGTCAACAATAGTATGTTGTCAATTGGTCACTCTTACAATAAGGGAGAGAGTACTATCATATCCTTTGGCGGGTGTGATGATGATGATGATGATGTAAATACCTCAACACTTTCTGGTTATGAACTTCTTATGGGTCAACCTTTTCCAAAAACTGAAGCTATGAATGAGACAGACTTTGGCAAATTAAAAGCTGGTGCATTTGTAAATCAACCTCATATAGTTTCTGGAGCTGGAACCGTTTCCAGAAAGAAAGATGACCAGAAGACGTCTAAGAAGGCTCCTTCAAACAACTTCCCTTCAAATGTGCGGAGTTTGCTATCAACTGGTATGCTGGATGGAGTTCCTGTGAAGTATATTGCCTGGTCCCGGGAGAAGGAGCTGCAGGCTGTAATTAAAGGTTCTGGTTATCTATGTGGCTGTCCATCATGTAACTTCTCTAAAGTAATCAATGCATATGAATTTGAGCGTCATGCTAGTTGCAAAACAAAACACCCCAATAACCATATATATTTTGAGAATGGGAAGACCATCTACGGGATTGTGCAAGAGCTCAGGAGCACCCCTCAGAGTATGCTGTTTGACGTTATTCAGACTATTACTGGTTCACAAATCAATCAGAAATCTTACCGTCTTTGGAAAGAATCATTTTTGGCAGCAACACGTGAACTTCAGCGTATATACGGGAAGGATGAGGTGAAACAATTGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

532

Amino Acids

59.14

Weight (kDa)

5.95

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 424 - 477 2.8e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 516, 597
AatII GACGTC 1 cut(s) 1154
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 2 cut(s) 38, 544
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 1 cut(s) 493
AciI CCGC 3 cut(s) 296, 954, 1192
AclWI GGATC 3 cut(s) 369, 410, 586
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 301, 1343
AcuI CTGAAG 3 cut(s) 303, 1059, 1538
AcvI CACGTG 1 cut(s) 1547
AcyI GRCGYC 1 cut(s) 1151
AfaI GTAC 4 cut(s) 40, 698, 775, 937
AfiI CCNNNNNNNGG 6 cut(s) 437, 642, 954, 1251, 1258, 1419
AflIII ACRYGT 3 cut(s) 318, 491, 1544
AgsI TTSAA 4 cut(s) 167, 828, 1170, 1185
AjnI CCWGG 1 cut(s) 1244
AluBI AGCT 6 cut(s) 161, 1043, 1076, 1115, 1264, 1435
AluI AGCT 6 cut(s) 161, 1043, 1076, 1115, 1264, 1435
Alw21I GWGCWC 2 cut(s) 1437, 1445
Alw26I GTCTC 4 cut(s) 148, 405, 595, 1046
AlwI GGATC 3 cut(s) 369, 410, 586
Ama87I CYCGRG 1 cut(s) 1251
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 2 cut(s) 1264, 1538
ApoI RAATTY 2 cut(s) 301, 1343
Asp700I GAANNNNTTC 1 cut(s) 1123
Asp718I GGTACC 1 cut(s) 38
AspS9I GGNCC 2 cut(s) 125, 1248
AsuC2I CCSGG 2 cut(s) 1252, 1253
AsuHPI GGTGA 5 cut(s) 71, 310, 779, 803, 1591
AvaI CYCGRG 1 cut(s) 1251
AvaII GGWCC 2 cut(s) 125, 1248
BalI TGGCCA 1 cut(s) 255
BanI GGYRCC 2 cut(s) 38, 544
BanII GRGCYC 2 cut(s) 96, 1437
BarI GAAGNNNNNNTAC 2 cut(s) 1400, 1432
BbrPI CACGTG 1 cut(s) 1547
BbsI GAAGAC 3 cut(s) 861, 1154, 1415
Bbv12I GWGCWC 2 cut(s) 1437, 1445
BbvI GCAGC 2 cut(s) 1251, 1550
BccI CCATC 6 cut(s) 22, 50, 116, 1214, 1315, 1421
BciT130I CCWGG 1 cut(s) 1246
BcnI CCSGG 2 cut(s) 1252, 1253
BcoDI GTCTC 4 cut(s) 148, 405, 595, 1046
BfaI CTAG 2 cut(s) 420, 1359
BfmI CTRYAG 2 cut(s) 877, 1265
BglI GCCNNNNNGGC 1 cut(s) 542
BisI GCNGC 2 cut(s) 1265, 1539
BlsI GCNGC 2 cut(s) 1266, 1540
BmcAI AGTACT 2 cut(s) 775, 937
Bme1390I CCNGG 3 cut(s) 1246, 1252, 1253
Bme18I GGWCC 2 cut(s) 125, 1248
BmeT110I CYCGRG 1 cut(s) 1251
BmgT120I GGNCC 2 cut(s) 125, 1248
BmiI GGNNCC 5 cut(s) 40, 546, 1120, 1164, 1250
BmrFI CCNGG 3 cut(s) 1246, 1252, 1253
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 1 cut(s) 523
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 3 cut(s) 861, 1154, 1415
BplI GAGNNNNNCTC 4 cut(s) 145, 177, 1432, 1464
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 1 cut(s) 1436
BpuMI CCSGG 2 cut(s) 1252, 1253
BsaAI YACGTR 1 cut(s) 1547
BsaHI GRCGYC 1 cut(s) 1151
BsaJI CCNNGG 2 cut(s) 218, 1251
BsaXI ACNNNNNCTCC 2 cut(s) 1215, 1245
Bsc4I CCNNNNNNNGG 6 cut(s) 437, 642, 954, 1251, 1258, 1419
Bse1I ACTGG 7 cut(s) 42, 234, 256, 414, 831, 1213, 1489
BseBI CCWGG 1 cut(s) 1246
BseDI CCNNGG 2 cut(s) 218, 1251
BseGI GGATG 7 cut(s) 33, 127, 571, 613, 697, 1225, 1579
BseLI CCNNNNNNNGG 6 cut(s) 437, 642, 954, 1251, 1258, 1419
BseMII CTCAG 5 cut(s) 81, 348, 588, 1450, 1463
BseNI ACTGG 7 cut(s) 42, 234, 256, 414, 831, 1213, 1489
BseXI GCAGC 2 cut(s) 1251, 1550
Bsh1236I CGCG 1 cut(s) 493
Bsh1285I CGRYCG 1 cut(s) 789
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 2 cut(s) 38, 544
BsiEI CGRYCG 1 cut(s) 789
BsiHKAI GWGCWC 2 cut(s) 1437, 1445
BsiHKCI CYCGRG 1 cut(s) 1251
BsiSI CCGG 1 cut(s) 1252
BslFI GGGAC 2 cut(s) 684, 1234
BslI CCNNNNNNNGG 6 cut(s) 437, 642, 954, 1251, 1258, 1419
BsmAI GTCTC 4 cut(s) 148, 405, 595, 1046
BsmFI GGGAC 2 cut(s) 684, 1234
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 1251
Bsp1286I GDGCHC 3 cut(s) 96, 1437, 1445
Bsp143I GATC 5 cut(s) 361, 415, 578, 662, 786
Bsp19I CCATGG 1 cut(s) 218
BspACI CCGC 3 cut(s) 296, 954, 1192
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 5 cut(s) 82, 347, 587, 1449, 1462
BspFNI CGCG 1 cut(s) 493
BspHI TCATGA 2 cut(s) 871, 1592
BspLI GGNNCC 5 cut(s) 40, 546, 1120, 1164, 1250
BspMAI CTGCAG 1 cut(s) 1269
BspPI GGATC 3 cut(s) 369, 410, 586
BspT107I GGYRCC 2 cut(s) 38, 544
BsrBI CCGCTC 1 cut(s) 296
BsrI ACTGG 7 cut(s) 42, 234, 256, 414, 831, 1213, 1489
BssECI CCNNGG 2 cut(s) 218, 1251
BssMI GATC 5 cut(s) 361, 415, 578, 662, 786
BssNI GRCGYC 1 cut(s) 1151
BssT1I CCWWGG 1 cut(s) 218
Bst2UI CCWGG 1 cut(s) 1246
Bst4CI ACNGT 4 cut(s) 479, 773, 1123, 1514
BstACI GRCGYC 1 cut(s) 1151
BstBAI YACGTR 1 cut(s) 1547
BstC8I GCNNGC 1 cut(s) 1269
BstDEI CTNAG 6 cut(s) 90, 334, 574, 1155, 1436, 1449
BstDSI CCRYGG 1 cut(s) 218
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 7 cut(s) 33, 127, 571, 613, 697, 1225, 1579
BstFNI CGCG 1 cut(s) 493
BstKTI GATC 5 cut(s) 364, 418, 581, 665, 789
BstMAI GTCTC 4 cut(s) 148, 405, 595, 1046
BstMBI GATC 5 cut(s) 361, 415, 578, 662, 786
BstMCI CGRYCG 1 cut(s) 789
BstMWI GCNNNNNNNGC 4 cut(s) 293, 509, 542, 1198
BstNI CCWGG 1 cut(s) 1246
BstNSI RCATGY 2 cut(s) 322, 512
BstSCI CCNGG 3 cut(s) 1244, 1250, 1251
BstSFI CTRYAG 2 cut(s) 877, 1265
BstUI CGCG 1 cut(s) 493
BstV1I GCAGC 2 cut(s) 1251, 1550
BstV2I GAAGAC 3 cut(s) 861, 1154, 1415
BstX2I RGATCY 2 cut(s) 361, 415
BstYI RGATCY 2 cut(s) 361, 415
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 218
BtsCI GGATG 7 cut(s) 33, 127, 571, 613, 697, 1225, 1579
BtsIMutI CAGTG 4 cut(s) 49, 261, 407, 755
Cac8I GCNNGC 1 cut(s) 1269
CciI TCATGA 2 cut(s) 871, 1592
Cfr13I GGNCC 2 cut(s) 125, 1248
Cfr9I CCCGGG 1 cut(s) 1251
CseI GACGC 1 cut(s) 1340
Csp6I GTAC 4 cut(s) 39, 697, 774, 936
CviQI GTAC 4 cut(s) 39, 697, 774, 936
DdeI CTNAG 6 cut(s) 90, 334, 574, 1155, 1436, 1449
DpnI GATC 5 cut(s) 363, 417, 580, 664, 788
DpnII GATC 5 cut(s) 361, 415, 578, 662, 786
EaeI YGGCCR 1 cut(s) 253
Ecl136II GAGCTC 1 cut(s) 1435
Eco130I CCWWGG 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 96, 1437
Eco47I GGWCC 2 cut(s) 125, 1248
Eco53kI GAGCTC 1 cut(s) 1435
Eco57I CTGAAG 3 cut(s) 303, 1059, 1538
Eco72I CACGTG 1 cut(s) 1547
Eco88I CYCGRG 1 cut(s) 1251
EcoICRI GAGCTC 1 cut(s) 1435
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoRII CCWGG 1 cut(s) 1244
EcoT14I CCWWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 1339
EcoT38I GRGCYC 2 cut(s) 96, 1437
ErhI CCWWGG 1 cut(s) 218
FaqI GGGAC 2 cut(s) 684, 1234
FauI CCCGC 1 cut(s) 947
FauNDI CATATG 1 cut(s) 1339
Fnu4HI GCNGC 2 cut(s) 1265, 1539
FokI GGATG 7 cut(s) 40, 134, 578, 620, 704, 1232, 1586
FriOI GRGCYC 2 cut(s) 96, 1437
Fsp4HI GCNGC 2 cut(s) 1265, 1539
FspBI CTAG 2 cut(s) 420, 1359
GluI GCNGC 2 cut(s) 1265, 1539
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 1252
HgaI GACGC 1 cut(s) 1340
Hin1I GRCGYC 1 cut(s) 1151
HincII GTYRAC 2 cut(s) 889, 1022
HindII GTYRAC 2 cut(s) 889, 1022
HinfI GANTC 7 cut(s) 13, 137, 278, 377, 427, 632, 1526
HpaII CCGG 1 cut(s) 1252
HphI GGTGA 5 cut(s) 71, 310, 779, 803, 1591
Hpy166II GTNNAC 6 cut(s) 261, 556, 889, 1022, 1490, 1550
Hpy188I TCNGA 8 cut(s) 12, 283, 337, 662, 714, 1452, 1476, 1503
Hpy188III TCNNGA 8 cut(s) 164, 576, 784, 872, 1110, 1128, 1438, 1593
Hpy8I GTNNAC 6 cut(s) 261, 556, 889, 1022, 1490, 1550
HpyAV CCTTC 5 cut(s) 1153, 1176, 1191, 1252, 1564
HpyCH4III ACNGT 4 cut(s) 479, 773, 1123, 1514
HpyCH4IV ACGT 3 cut(s) 1151, 1467, 1546
HpyCH4V TGCA 6 cut(s) 206, 1082, 1267, 1337, 1365, 1429
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 509, 542, 1198
HpyF3I CTNAG 6 cut(s) 90, 334, 574, 1155, 1436, 1449
HpySE526I ACGT 3 cut(s) 1151, 1467, 1546
Hsp92I GRCGYC 1 cut(s) 1151
KpnI GGTACC 1 cut(s) 42
Kzo9I GATC 5 cut(s) 361, 415, 578, 662, 786
LmnI GCTCC 4 cut(s) 1112, 1168, 1261, 1440
Lsp1109I GCAGC 2 cut(s) 1251, 1550
LweI GCATC 1 cut(s) 523
MaeI CTAG 2 cut(s) 420, 1359
MaeII ACGT 3 cut(s) 1151, 1467, 1546
MaeIII GTNAC 4 cut(s) 487, 767, 911, 1313
MalI GATC 5 cut(s) 363, 417, 580, 664, 788
MbiI CCGCTC 1 cut(s) 296
MboI GATC 5 cut(s) 361, 415, 578, 662, 786
MboII GAAGA 5 cut(s) 72, 425, 866, 1159, 1420
MfeI CAATTG 2 cut(s) 906, 1586
MflI RGATCY 2 cut(s) 361, 415
MhlI GDGCHC 3 cut(s) 96, 1437, 1445
MlsI TGGCCA 1 cut(s) 255
MluI ACGCGT 1 cut(s) 491
MluNI TGGCCA 1 cut(s) 255
MlyI GAGTC 2 cut(s) 146, 436
Mox20I TGGCCA 1 cut(s) 255
Mph1103I ATGCAT 1 cut(s) 1339
MroXI GAANNNNTTC 1 cut(s) 1123
MscI TGGCCA 1 cut(s) 255
MseI TTAA 5 cut(s) 51, 200, 354, 1070, 1278
MslI CAYNNNNRTG 2 cut(s) 623, 863
Msp20I TGGCCA 1 cut(s) 255
MspI CCGG 1 cut(s) 1252
MspR9I CCNGG 3 cut(s) 1246, 1252, 1253
MunI CAATTG 2 cut(s) 906, 1586
MvaI CCWGG 1 cut(s) 1246
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 4 cut(s) 293, 509, 542, 1198
NciI CCSGG 2 cut(s) 1252, 1253
NcoI CCATGG 1 cut(s) 218
NdeI CATATG 1 cut(s) 1339
NdeII GATC 5 cut(s) 361, 415, 578, 662, 786
NlaIV GGNNCC 5 cut(s) 40, 546, 1120, 1164, 1250
NmuCI GTSAC 3 cut(s) 487, 767, 911
NsiI ATGCAT 1 cut(s) 1339
NspI RCATGY 2 cut(s) 322, 512
PagI TCATGA 2 cut(s) 871, 1592
PciI ACATGT 1 cut(s) 318
PdmI GAANNNNTTC 1 cut(s) 1123
PfeI GAWTC 5 cut(s) 13, 278, 377, 632, 1526
PkrI GCNGC 2 cut(s) 1266, 1540
Ple19I CGATCG 1 cut(s) 789
PleI GAGTC 2 cut(s) 145, 435
PmaCI CACGTG 1 cut(s) 1547
PmlI CACGTG 1 cut(s) 1547
PpsI GAGTC 2 cut(s) 145, 435
Ppu21I YACGTR 1 cut(s) 1547
PscI ACATGT 1 cut(s) 318
PsiI TTATAA 2 cut(s) 516, 597
Psp124BI GAGCTC 1 cut(s) 1437
Psp6I CCWGG 1 cut(s) 1244
PspCI CACGTG 1 cut(s) 1547
PspGI CCWGG 1 cut(s) 1244
PspN4I GGNNCC 5 cut(s) 40, 546, 1120, 1164, 1250
PspPI GGNCC 2 cut(s) 125, 1248
PstI CTGCAG 1 cut(s) 1269
PsuI RGATCY 2 cut(s) 361, 415
PvuI CGATCG 1 cut(s) 789
RsaI GTAC 4 cut(s) 40, 698, 775, 937
RsaNI GTAC 4 cut(s) 39, 697, 774, 936
RseI CAYNNNNRTG 2 cut(s) 623, 863
SacI GAGCTC 1 cut(s) 1437
SaqAI TTAA 5 cut(s) 51, 200, 354, 1070, 1278
SatI GCNGC 2 cut(s) 1265, 1539
Sau3AI GATC 5 cut(s) 361, 415, 578, 662, 786
Sau96I GGNCC 2 cut(s) 125, 1248
ScaI AGTACT 2 cut(s) 775, 937
SchI GAGTC 2 cut(s) 146, 436
ScrFI CCNGG 3 cut(s) 1246, 1252, 1253
SduI GDGCHC 3 cut(s) 96, 1437, 1445
SfaNI GCATC 1 cut(s) 523
SfcI CTRYAG 2 cut(s) 877, 1265
SinI GGWCC 2 cut(s) 125, 1248
SmaI CCCGGG 1 cut(s) 1253
SmiMI CAYNNNNRTG 2 cut(s) 623, 863
SsiI CCGC 3 cut(s) 296, 954, 1192
SspMI CTAG 2 cut(s) 420, 1359
SstI GAGCTC 1 cut(s) 1437
StyD4I CCNGG 3 cut(s) 1244, 1250, 1251
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 479, 773, 1123, 1514
TaiI ACGT 3 cut(s) 1154, 1470, 1549
TaqI TCGA 2 cut(s) 751, 785
TatI WGTACW 3 cut(s) 696, 773, 935
TfiI GAWTC 5 cut(s) 13, 278, 377, 632, 1526
Tru1I TTAA 5 cut(s) 51, 200, 354, 1070, 1278
Tru9I TTAA 5 cut(s) 51, 200, 354, 1070, 1278
TscAI CASTG 4 cut(s) 49, 268, 414, 762
TseFI GTSAC 3 cut(s) 487, 767, 911
TseI GCWGC 2 cut(s) 1264, 1538
Tsp45I GTSAC 3 cut(s) 487, 767, 911
TspDTI ATGAA 6 cut(s) 106, 607, 828, 1020, 1061, 1356
TspGWI ACGGA 1 cut(s) 578
TspMI CCCGGG 1 cut(s) 1251
TspRI CASTG 4 cut(s) 49, 268, 414, 762
VpaK11BI GGWCC 2 cut(s) 125, 1248
XagI CCTNNNNNAGG 1 cut(s) 640
XapI RAATTY 2 cut(s) 301, 1343
XceI RCATGY 2 cut(s) 322, 512
XmaI CCCGGG 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 1123
XspI CTAG 2 cut(s) 420, 1359
ZraI GACGTC 1 cut(s) 1152
ZrmI AGTACT 2 cut(s) 775, 937
Zsp2I ATGCAT 1 cut(s) 1339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.