RLG00000024504

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0009698
Physical Location & Seq
Forward (+)
36504636 .. 36508053
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024504

Sequence Viewer

Length: 1608 bp
ATGGCAAAGGGTACTGGGGGTGTAAATGATGGTGAGAGGCTTTATGATAATTCTTCTGCAACTGAGCCTAAGCGTTCTCATCAATGGTTCATGGATGGTCCTGAGGTAGAGTTATTCCCAAACAAGAAACAGGCTATTGAAGTTCCAGGCACCAATCTATTTTCAGGCTTGTTGAACGCAAATGTTTCTCCATGGGGAAATGTTCCCAGTTTTCAGTCATTCTCTGGCCAGTTCACTGAAAGGTTATTTGATTCTGAAGCAGACAGAGCCGTGAATTTTGAGGACAGAAACATTTCATCAGTTGGCTCAGAAAAAATGAAAAAAATTAATGAGGATCTATTTGGGAATGATTCTTCTTTTGGTTTATCTATGTCCCATTCACTGGAAGATCCTAGGTTGAGTCCTAACTATGGTGGTTTTAGAAAAGTGAAAGTCAGTGAGGTAAAGGACTCTGAGAATGTCCTGCGTGTTTCGGTTGGACATGCTTATAATCCGGGAGATAACGATGCCATGTTGGCGCCTCATGTTTACAAGGCGGATGACAACTCAGGATCAATGGGTCTCACTTATAAGAAAGAGGATGAGAACTTCACAACCATGAGTGATTCCTATAATAGGGCAGATAACAATTTTAGATCAATGGGACAACCCTTTACTAAAGGGGATGAGTACATAGGAATTGGTCAAACATACAAGGAGAATAGTAATACCCTTTTGAGGAGTCGAACATTCAACAAGGGTGACAGTACTATCATCTCGGTTGGTGAAACCTACAACAAGGCAGATGAAGGTACCATGCCAACTGGTCATATTTATAGTAAAGGGGAAGAGGTATCAATGGGGCCAACTGGTCATATTTATAGTAAAGGGGAAGAGGTATCAATGGGTCATGACTATGGCAAGGTCGACAATAATATGTTGTCAATTGGTCACTCTTACAATAAGGGAGAGAGTACCATCATATCCTTTGGCGGGTGTGATGATGATGATGTAAATACCTCAACAATCTCTGGCTATGAACTTCTTATGGGTCAATCTTTTCCAAAAACAGAAGCTATGAATGAGAAAGACTTGGGTAAATTAAATGCTGATGCATTTGTAAATCAACCTCATATAATTGCTGGAGCTGAAACTGTTTCCAGAAAGAAGGATGACCAGAAAATGTCTAAGAAGTCGCCTTCAAACAACTTCCCTTCGAATGTGCGAAGTTTGCTATCAACTGGTATGCTGGATGGAGTTCCTGTAAAGTATATTGCCTGGTCACGGGAGAAGGAGCTGCAGGCTGTAATTAAAGGTTCTGGGTATCTATGTGGCTGTCAGTCATGTAACTTCTCTAAGGTAATCAATGCATATGAATTTGAGCGTCATGCTAGTTGCAAAACAAAACACCCAAACAACCACATATATTTTGAGAATGGGAAGACCATCTATGGGATTGTGCAAGAGCTCAGGAGCACACCTCAGAATATGCTGTTTGACGTTATTCAGACTATTACTGGTTCACAAATCAATCAGAAATCCTTCCGTCTTTGGAAAGAATCGTTTTTGGCAGCAACACGTGAACTTCAACGTATATACGGCAAGGATGAAGTGAAACAATTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

536

Amino Acids

59.36

Weight (kDa)

5.74

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 429 - 482 2.8e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 489, 570
Acc65I GGTACC 1 cut(s) 791
AccB1I GGYRCC 3 cut(s) 149, 517, 791
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 1 cut(s) 906
AciI CCGC 2 cut(s) 536, 972
AclWI GGATC 3 cut(s) 342, 383, 559
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 2 cut(s) 274, 1355
AcuI CTGAAG 1 cut(s) 276
AcvI CACGTG 1 cut(s) 1559
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 5 cut(s) 13, 671, 748, 793, 955
AfiI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 972, 1263, 1431
AflIII ACRYGT 1 cut(s) 1556
AgsI TTSAA 5 cut(s) 140, 175, 733, 1182, 1568
AjnI CCWGG 2 cut(s) 145, 1256
AluBI AGCT 4 cut(s) 1055, 1127, 1276, 1447
AluI AGCT 4 cut(s) 1055, 1127, 1276, 1447
Alw21I GWGCWC 2 cut(s) 1449, 1457
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 3 cut(s) 342, 383, 559
AoxI GGCC 2 cut(s) 226, 842
ApeKI GCWGC 2 cut(s) 1276, 1550
ApoI RAATTY 2 cut(s) 274, 1355
AseI ATTAAT 1 cut(s) 327
Asp700I GAANNNNTTC 2 cut(s) 292, 1520
Asp718I GGTACC 1 cut(s) 791
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 1 cut(s) 520
AspS9I GGNCC 2 cut(s) 98, 842
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 3 cut(s) 44, 752, 776
AsuII TTCGAA 1 cut(s) 1196
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 102
BalI TGGCCA 1 cut(s) 228
BanI GGYRCC 3 cut(s) 149, 517, 791
BanII GRGCYC 1 cut(s) 1449
BbrPI CACGTG 1 cut(s) 1559
BbsI GAAGAC 1 cut(s) 1427
Bbv12I GWGCWC 2 cut(s) 1449, 1457
BbvI GCAGC 2 cut(s) 1263, 1562
BccI CCATC 5 cut(s) 23, 89, 965, 1226, 1433
BceAI ACGGC 2 cut(s) 254, 1594
BciT130I CCWGG 2 cut(s) 147, 1258
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 393, 1371
BfmI CTRYAG 1 cut(s) 1277
BfoI RGCGCY 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 2 cut(s) 1277, 1551
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 2 cut(s) 1278, 1552
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 3 cut(s) 147, 495, 1258
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 842
BmiI GGNNCC 4 cut(s) 151, 519, 793, 843
BmrFI CCNGG 3 cut(s) 147, 495, 1258
BmrI ACTGGG 2 cut(s) 24, 201
BmsI GCATC 2 cut(s) 496, 1081
BmuI ACTGGG 2 cut(s) 24, 201
BpiI GAAGAC 1 cut(s) 1427
BplI GAGNNNNNCTC 2 cut(s) 1444, 1476
BpmI CTGGAG 1 cut(s) 1143
Bpu10I CCTNAGC 2 cut(s) 69, 1448
Bpu14I TTCGAA 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 495
BsaAI YACGTR 1 cut(s) 1559
BsaHI GRCGYC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 191, 392
BsaXI ACNNNNNCTCC 2 cut(s) 1227, 1257
Bsc4I CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 972, 1263, 1431
Bse1I ACTGG 8 cut(s) 19, 207, 229, 387, 808, 853, 1225, 1501
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 147, 1258
BseDI CCNNGG 2 cut(s) 191, 392
BseGI GGATG 7 cut(s) 100, 544, 586, 670, 1156, 1237, 1591
BseLI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 972, 1263, 1431
BseMII CTCAG 7 cut(s) 54, 93, 321, 444, 561, 1462, 1475
BseNI ACTGG 8 cut(s) 19, 207, 229, 387, 808, 853, 1225, 1501
BseRI GAGGAG 1 cut(s) 733
BseXI GCAGC 2 cut(s) 1263, 1562
BshFI GGCC 2 cut(s) 228, 844
BshNI GGYRCC 3 cut(s) 149, 517, 791
BsiHKAI GWGCWC 2 cut(s) 1449, 1457
BsiSI CCGG 1 cut(s) 494
BslFI GGGAC 2 cut(s) 358, 657
BslI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 972, 1263, 1431
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 2 cut(s) 358, 657
BsnI GGCC 2 cut(s) 228, 844
Bso31I GGTCTC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 1196
Bsp1286I GDGCHC 2 cut(s) 1449, 1457
Bsp143I GATC 4 cut(s) 334, 388, 551, 635
Bsp19I CCATGG 1 cut(s) 191
BspACI CCGC 2 cut(s) 536, 972
BspANI GGCC 2 cut(s) 228, 844
BspCNI CTCAG 7 cut(s) 55, 94, 320, 445, 560, 1461, 1474
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 151, 519, 793, 843
BspMAI CTGCAG 1 cut(s) 1281
BspPI GGATC 3 cut(s) 342, 383, 559
BspT104I TTCGAA 1 cut(s) 1196
BspT107I GGYRCC 3 cut(s) 149, 517, 791
BspTNI GGTCTC 1 cut(s) 566
BsrI ACTGG 8 cut(s) 19, 207, 229, 387, 808, 853, 1225, 1501
BssECI CCNNGG 2 cut(s) 191, 392
BssMI GATC 4 cut(s) 334, 388, 551, 635
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 2 cut(s) 191, 392
Bst2UI CCWGG 2 cut(s) 147, 1258
Bst4CI ACNGT 2 cut(s) 746, 1135
Bst6I CTCTTC 2 cut(s) 822, 867
BstACI GRCGYC 1 cut(s) 518
BstBAI YACGTR 1 cut(s) 1559
BstBI TTCGAA 1 cut(s) 1196
BstC8I GCNNGC 1 cut(s) 1281
BstDSI CCRYGG 1 cut(s) 191
BstENI CCTNNNNNAGG 1 cut(s) 613
BstF5I GGATG 7 cut(s) 100, 544, 586, 670, 1156, 1237, 1591
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 1 cut(s) 520
BstKTI GATC 4 cut(s) 337, 391, 554, 638
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 4 cut(s) 334, 388, 551, 635
BstMWI GCNNNNNNNGC 3 cut(s) 266, 515, 1210
BstNI CCWGG 2 cut(s) 147, 1258
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 3 cut(s) 145, 493, 1256
BstSFI CTRYAG 1 cut(s) 1277
BstV1I GCAGC 2 cut(s) 1263, 1562
BstV2I GAAGAC 1 cut(s) 1427
BstX2I RGATCY 2 cut(s) 334, 388
BstYI RGATCY 2 cut(s) 334, 388
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 2 cut(s) 228, 844
BtgI CCRYGG 1 cut(s) 191
BtsCI GGATG 7 cut(s) 100, 544, 586, 670, 1156, 1237, 1591
BtsIMutI CAGTG 3 cut(s) 234, 380, 442
Cac8I GCNNGC 1 cut(s) 1281
CciI TCATGA 1 cut(s) 889
CfoI GCGC 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 98, 842
CseI GACGC 1 cut(s) 1352
Csp6I GTAC 5 cut(s) 12, 670, 747, 792, 954
CviQI GTAC 5 cut(s) 12, 670, 747, 792, 954
DinI GGCGCC 1 cut(s) 519
DpnI GATC 4 cut(s) 336, 390, 553, 637
DpnII GATC 4 cut(s) 334, 388, 551, 635
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 2 cut(s) 822, 867
EarI CTCTTC 2 cut(s) 822, 867
EciI GGCGGA 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 1447
Eco130I CCWWGG 2 cut(s) 191, 392
Eco24I GRGCYC 1 cut(s) 1449
Eco31I GGTCTC 1 cut(s) 566
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 1447
Eco57I CTGAAG 1 cut(s) 276
Eco72I CACGTG 1 cut(s) 1559
Eco81I CCTNAGG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 1447
EcoNI CCTNNNNNAGG 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 145, 1256
EcoT14I CCWWGG 2 cut(s) 191, 392
EcoT22I ATGCAT 2 cut(s) 1096, 1351
EcoT38I GRGCYC 1 cut(s) 1449
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 2 cut(s) 191, 392
FaqI GGGAC 2 cut(s) 358, 657
FauI CCCGC 1 cut(s) 965
FauNDI CATATG 1 cut(s) 1351
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 2 cut(s) 1277, 1551
FokI GGATG 7 cut(s) 107, 551, 593, 677, 1163, 1244, 1598
FriOI GRGCYC 1 cut(s) 1449
Fsp4HI GCNGC 2 cut(s) 1277, 1551
FspBI CTAG 2 cut(s) 393, 1371
GlaI GCGC 1 cut(s) 519
GluI GCNGC 2 cut(s) 1277, 1551
GsuI CTGGAG 1 cut(s) 1143
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 2 cut(s) 228, 844
HapII CCGG 1 cut(s) 494
HgaI GACGC 1 cut(s) 1352
HhaI GCGC 1 cut(s) 520
Hin1I GRCGYC 1 cut(s) 518
Hin6I GCGC 1 cut(s) 518
HinP1I GCGC 1 cut(s) 518
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 7 cut(s) 251, 350, 400, 449, 605, 721, 1538
HpaII CCGG 1 cut(s) 494
HphI GGTGA 3 cut(s) 44, 752, 776
Hpy166II GTNNAC 5 cut(s) 234, 529, 907, 1502, 1562
Hpy188I TCNGA 6 cut(s) 256, 310, 454, 1464, 1488, 1515
Hpy188III TCNNGA 5 cut(s) 101, 549, 890, 1140, 1450
Hpy8I GTNNAC 5 cut(s) 234, 529, 907, 1502, 1562
HpyAV CCTTC 6 cut(s) 782, 1141, 1188, 1203, 1264, 1531
HpyCH4III ACNGT 2 cut(s) 746, 1135
HpyCH4IV ACGT 3 cut(s) 1479, 1558, 1570
HpyCH4V TGCA 6 cut(s) 59, 1094, 1279, 1349, 1377, 1441
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 515, 1210
HpySE526I ACGT 3 cut(s) 1479, 1558, 1570
Hsp92I GRCGYC 1 cut(s) 518
HspAI GCGC 1 cut(s) 518
KasI GGCGCC 1 cut(s) 517
KpnI GGTACC 1 cut(s) 795
Kzo9I GATC 4 cut(s) 334, 388, 551, 635
LmnI GCTCC 3 cut(s) 1124, 1273, 1452
Lsp1109I GCAGC 2 cut(s) 1263, 1562
LweI GCATC 2 cut(s) 496, 1081
MaeI CTAG 2 cut(s) 393, 1371
MaeII ACGT 3 cut(s) 1479, 1558, 1570
MaeIII GTNAC 4 cut(s) 740, 929, 1260, 1325
MalI GATC 4 cut(s) 336, 390, 553, 637
MboI GATC 4 cut(s) 334, 388, 551, 635
MboII GAAGA 6 cut(s) 45, 345, 398, 839, 884, 1432
MfeI CAATTG 2 cut(s) 924, 1598
MflI RGATCY 2 cut(s) 334, 388
MhlI GDGCHC 2 cut(s) 1449, 1457
MlsI TGGCCA 1 cut(s) 228
MluNI TGGCCA 1 cut(s) 228
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 3 cut(s) 409, 443, 730
MmeI TCCRAC 1 cut(s) 457
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 2 cut(s) 1096, 1351
MroXI GAANNNNTTC 2 cut(s) 292, 1520
MscI TGGCCA 1 cut(s) 228
MseI TTAA 3 cut(s) 327, 1082, 1290
MslI CAYNNNNRTG 2 cut(s) 596, 894
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 1 cut(s) 494
MspR9I CCNGG 3 cut(s) 147, 495, 1258
MunI CAATTG 2 cut(s) 924, 1598
MvaI CCWGG 2 cut(s) 147, 1258
MwoI GCNNNNNNNGC 3 cut(s) 266, 515, 1210
NarI GGCGCC 1 cut(s) 518
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 1 cut(s) 191
NdeI CATATG 1 cut(s) 1351
NdeII GATC 4 cut(s) 334, 388, 551, 635
NlaIV GGNNCC 4 cut(s) 151, 519, 793, 843
NmuCI GTSAC 3 cut(s) 740, 929, 1260
NsiI ATGCAT 2 cut(s) 1096, 1351
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 1196
PagI TCATGA 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 292, 1520
PfeI GAWTC 4 cut(s) 251, 350, 605, 1538
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 2 cut(s) 1278, 1552
PleI GAGTC 3 cut(s) 408, 443, 729
PluTI GGCGCC 1 cut(s) 521
PmaCI CACGTG 1 cut(s) 1559
PmlI CACGTG 1 cut(s) 1559
PpsI GAGTC 3 cut(s) 408, 443, 729
Ppu21I YACGTR 1 cut(s) 1559
PshBI ATTAAT 1 cut(s) 327
PsiI TTATAA 2 cut(s) 489, 570
Psp124BI GAGCTC 1 cut(s) 1449
Psp6I CCWGG 2 cut(s) 145, 1256
PspCI CACGTG 1 cut(s) 1559
PspGI CCWGG 2 cut(s) 145, 1256
PspN4I GGNNCC 4 cut(s) 151, 519, 793, 843
PspPI GGNCC 2 cut(s) 98, 842
PstI CTGCAG 1 cut(s) 1281
PsuI RGATCY 2 cut(s) 334, 388
RsaI GTAC 5 cut(s) 13, 671, 748, 793, 955
RsaNI GTAC 5 cut(s) 12, 670, 747, 792, 954
RseI CAYNNNNRTG 2 cut(s) 596, 894
SacI GAGCTC 1 cut(s) 1449
SalI GTCGAC 1 cut(s) 905
SaqAI TTAA 3 cut(s) 327, 1082, 1290
SatI GCNGC 2 cut(s) 1277, 1551
Sau3AI GATC 4 cut(s) 334, 388, 551, 635
Sau96I GGNCC 2 cut(s) 98, 842
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 3 cut(s) 409, 443, 730
ScrFI CCNGG 3 cut(s) 147, 495, 1258
SduI GDGCHC 2 cut(s) 1449, 1457
SfaNI GCATC 2 cut(s) 496, 1081
SfcI CTRYAG 1 cut(s) 1277
SfoI GGCGCC 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 1196
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 2 cut(s) 596, 894
SsiI CCGC 2 cut(s) 536, 972
SspDI GGCGCC 1 cut(s) 517
SspMI CTAG 2 cut(s) 393, 1371
SstI GAGCTC 1 cut(s) 1449
StyD4I CCNGG 3 cut(s) 145, 493, 1256
StyI CCWWGG 2 cut(s) 191, 392
TaaI ACNGT 2 cut(s) 746, 1135
TaiI ACGT 3 cut(s) 1482, 1561, 1573
TaqI TCGA 3 cut(s) 724, 906, 1196
TatI WGTACW 2 cut(s) 669, 746
TfiI GAWTC 4 cut(s) 251, 350, 605, 1538
Tru1I TTAA 3 cut(s) 327, 1082, 1290
Tru9I TTAA 3 cut(s) 327, 1082, 1290
TscAI CASTG 3 cut(s) 241, 387, 442
TseFI GTSAC 3 cut(s) 740, 929, 1260
TseI GCWGC 2 cut(s) 1276, 1550
Tsp45I GTSAC 3 cut(s) 740, 929, 1260
TspDTI ATGAA 8 cut(s) 79, 285, 332, 801, 1032, 1073, 1368, 1602
TspGWI ACGGA 1 cut(s) 1514
TspRI CASTG 3 cut(s) 241, 387, 442
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 98
VspI ATTAAT 1 cut(s) 327
XagI CCTNNNNNAGG 1 cut(s) 613
XapI RAATTY 2 cut(s) 274, 1355
XceI RCATGY 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 2 cut(s) 292, 1520
XspI CTAG 2 cut(s) 393, 1371
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 2 cut(s) 1096, 1351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.