Rh3CG157000

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0009698
Physical Location & Seq
Reverse (-)
13136031 .. 13138312
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG157000.1

Sequence Viewer

Length: 1593 bp
ATGTCTTTTCAGAATCAGGGCTTTTGGATGGCAAAGGGTACCGGGGGTGTAAATGATGGTGAGAGGCTTTATGATAATTCTTCTGCAACTGAGCCTAAGCGTTCTCATCAATGGTTCATGGATGGTCCTGAGGTAGAGTTATTCCCAAACAAGAAACAGGCTATTGAAGTTCCAGGCACCAATCTATTTTCAAGCTTGTTGAACGCAAATGTTTCTCCATGGGGAAATGTTCCCAGTTTTCAGTCATTCTCTGGCCCGTTCACTGAAAGGTTATTTGATTCTGAAGCAGACAGAGCCGTGCATTTTGAGGACAGAAACATTTCATCAGTTGGCTCAGAAAAAATGAGAAAAGTTAATGAGGATCTATTTGGGAATGATTCCTCTTTTGGTTTATCTATGTCCCATTCACTGGAAGATCCTAGGTTGAGTCCTAACTATGGTGGTTTTAGAAAAGTGAAAGTCAGTGAGGTAAAGGACTCTGAGAATGTCATGCGTGTTTCGGTTGGACATGCTTATAATCCGGGAGATAATGATGCCATGTTGGCGCCTCATGTTTACAAGGCGGATGACAACTCAGGATCAATGGGTCTCACTTATAAGAAAGAGGATGAGAACTTCATAACCATGGGTGATTCCTATAATAGGGCAGATAACAATTTTAGATCAATGGGACAACCCTTTACTAAAGGGGATGAGTACATAGGAATTGGTCAAACATACAAGGAGAATAGTAATACCCTATTGAGGAGTCGAACATTCAACAAGGGTGACAGTACTATCATCTCGGTTGGTGAAACCTACAACAAGGCAGATGAAAGTACCATGTCAACTGGTCATATTTATAATAAAGGGGAAGAGATATCAATGGGTCATGACTATAGCAAGGTCGACAATAATATGTTGTCAATTGGTCACTCTTACAATAAGGGAGAGAGTACTATCATATCCTTTGGCGGGTGTGATGATGATGATGATGTAAATACCTCAACAATCTCTGGCTATGAACTTCTTATGGGTCAATCTTTTCCAAAAACAGAAGCTATGAATGAGAAAGACTTGGGTAAATTAAATGCTGATGCATTTGTAAATCAACCTCATATAATTGCTGGAGCTGAAACTGTTTCCAGAAAGAAGGATGACCAGAAAATGTCTAAGAAGTCTCCTTCAAACAACTTCCCTTCGAATGTGCGAAGTTTGCTATCAACTGGTATGCTGGATGGAGTTCCTGTAAAGTATATTGCCTGGTCACGGGAGAAGGAGCTGCAGGCTGTAATTAAAGGTTCTGGGTATCTATGTGGCTGTCAGTCATGTAACTTCTCTAAGGTAATCAATGCATATGAATTTGAGCGTCATGCTAGTTGCAAAACAAAACACCCAAATAACCACATTTATTTTGAGAATGGGAAGACCATCTATGGGATTGTGCAAGAGCTCAGGAGCACACCTCAGAATATGTTGTTTGACGTTATTCAGACTATTACTGGTTCACAAATCAATCAGAAATCCTTCCGTCTTTGGAAAGAATCGTTTTTGGCAGCAACACGTGAACTTCAACGTATATATGGCAAGGATGAAGTGAAACAATTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

530

Amino Acids

59.15

Weight (kDa)

5.74

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 424 - 477 2.7e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 516, 597, 843
Acc65I GGTACC 1 cut(s) 38
AccB1I GGYRCC 3 cut(s) 38, 176, 544
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 888
AciI CCGC 2 cut(s) 563, 954
AclWI GGATC 3 cut(s) 369, 410, 586
AcsI RAATTY 1 cut(s) 1340
AcuI CTGAAG 1 cut(s) 303
AcvI CACGTG 1 cut(s) 1544
AcyI GRCGYC 1 cut(s) 545
AfaI GTAC 5 cut(s) 40, 698, 775, 820, 937
AfiI CCNNNNNNNGG 7 cut(s) 409, 437, 642, 744, 954, 1248, 1416
AflIII ACRYGT 1 cut(s) 1541
AgsI TTSAA 6 cut(s) 167, 192, 202, 760, 1167, 1553
AjnI CCWGG 2 cut(s) 172, 1241
AluBI AGCT 5 cut(s) 195, 1040, 1112, 1261, 1432
AluI AGCT 5 cut(s) 195, 1040, 1112, 1261, 1432
Alw21I GWGCWC 2 cut(s) 1434, 1442
Alw26I GTCTC 2 cut(s) 593, 1164
AlwI GGATC 3 cut(s) 369, 410, 586
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 2 cut(s) 1261, 1535
ApoI RAATTY 1 cut(s) 1340
Asp700I GAANNNNTTC 2 cut(s) 319, 1505
Asp718I GGTACC 1 cut(s) 38
AspA2I CCTAGG 1 cut(s) 419
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 125, 254
AsuC2I CCSGG 2 cut(s) 43, 522
AsuHPI GGTGA 4 cut(s) 71, 641, 779, 803
AsuII TTCGAA 1 cut(s) 1181
AvaII GGWCC 1 cut(s) 125
AvrII CCTAGG 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 129
BanI GGYRCC 3 cut(s) 38, 176, 544
BanII GRGCYC 1 cut(s) 1434
BbrPI CACGTG 1 cut(s) 1544
BbsI GAAGAC 1 cut(s) 1412
Bbv12I GWGCWC 2 cut(s) 1434, 1442
BbvI GCAGC 2 cut(s) 1248, 1547
BccI CCATC 5 cut(s) 22, 50, 116, 1211, 1418
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 2 cut(s) 174, 1243
BcnI CCSGG 2 cut(s) 43, 522
BcoDI GTCTC 2 cut(s) 593, 1164
BfaI CTAG 2 cut(s) 420, 1356
BfmI CTRYAG 2 cut(s) 877, 1262
BfoI RGCGCY 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 542
BisI GCNGC 2 cut(s) 1262, 1536
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 2 cut(s) 1263, 1537
BmcAI AGTACT 2 cut(s) 775, 937
Bme1390I CCNGG 4 cut(s) 43, 174, 522, 1243
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 2 cut(s) 125, 254
BmiI GGNNCC 3 cut(s) 40, 178, 546
BmrFI CCNGG 4 cut(s) 43, 174, 522, 1243
BmrI ACTGGG 1 cut(s) 228
BmsI GCATC 2 cut(s) 523, 1066
BmuI ACTGGG 1 cut(s) 228
BpiI GAAGAC 1 cut(s) 1412
BplI GAGNNNNNCTC 2 cut(s) 1429, 1461
BpmI CTGGAG 1 cut(s) 1128
Bpu10I CCTNAGC 2 cut(s) 96, 1433
Bpu14I TTCGAA 1 cut(s) 1181
BpuMI CCSGG 2 cut(s) 43, 522
BsaAI YACGTR 1 cut(s) 1544
BsaHI GRCGYC 1 cut(s) 545
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 4 cut(s) 42, 218, 419, 624
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 7 cut(s) 409, 437, 642, 744, 954, 1248, 1416
Bse1I ACTGG 5 cut(s) 234, 414, 835, 1210, 1486
Bse21I CCTNAGG 1 cut(s) 129
BseBI CCWGG 2 cut(s) 174, 1243
BseDI CCNNGG 4 cut(s) 42, 218, 419, 624
BseGI GGATG 8 cut(s) 33, 127, 571, 613, 697, 1141, 1222, 1576
BseLI CCNNNNNNNGG 7 cut(s) 409, 437, 642, 744, 954, 1248, 1416
BseMII CTCAG 7 cut(s) 81, 120, 348, 471, 588, 1447, 1460
BseNI ACTGG 5 cut(s) 234, 414, 835, 1210, 1486
BseRI GAGGAG 1 cut(s) 760
BseXI GCAGC 2 cut(s) 1248, 1547
BshFI GGCC 1 cut(s) 255
BshNI GGYRCC 3 cut(s) 38, 176, 544
BsiHKAI GWGCWC 2 cut(s) 1434, 1442
BsiSI CCGG 2 cut(s) 42, 521
BslFI GGGAC 2 cut(s) 385, 684
BslI CCNNNNNNNGG 7 cut(s) 409, 437, 642, 744, 954, 1248, 1416
BsmAI GTCTC 2 cut(s) 593, 1164
BsmFI GGGAC 2 cut(s) 385, 684
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 1181
Bsp1286I GDGCHC 2 cut(s) 1434, 1442
Bsp143I GATC 4 cut(s) 361, 415, 578, 662
Bsp19I CCATGG 2 cut(s) 218, 624
BspACI CCGC 2 cut(s) 563, 954
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 7 cut(s) 82, 121, 347, 472, 587, 1446, 1459
BspHI TCATGA 1 cut(s) 871
BspLI GGNNCC 3 cut(s) 40, 178, 546
BspMAI CTGCAG 1 cut(s) 1266
BspPI GGATC 3 cut(s) 369, 410, 586
BspT104I TTCGAA 1 cut(s) 1181
BspT107I GGYRCC 3 cut(s) 38, 176, 544
BspTNI GGTCTC 1 cut(s) 593
BsrI ACTGG 5 cut(s) 234, 414, 835, 1210, 1486
BssECI CCNNGG 4 cut(s) 42, 218, 419, 624
BssMI GATC 4 cut(s) 361, 415, 578, 662
BssNI GRCGYC 1 cut(s) 545
BssT1I CCWWGG 3 cut(s) 218, 419, 624
Bst2UI CCWGG 2 cut(s) 174, 1243
Bst4CI ACNGT 2 cut(s) 773, 1120
Bst6I CTCTTC 1 cut(s) 849
BstACI GRCGYC 1 cut(s) 545
BstBAI YACGTR 1 cut(s) 1544
BstBI TTCGAA 1 cut(s) 1181
BstC8I GCNNGC 1 cut(s) 1266
BstDSI CCRYGG 2 cut(s) 218, 624
BstENI CCTNNNNNAGG 1 cut(s) 640
BstF5I GGATG 8 cut(s) 33, 127, 571, 613, 697, 1141, 1222, 1576
BstH2I RGCGCY 1 cut(s) 548
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 4 cut(s) 364, 418, 581, 665
BstMAI GTCTC 2 cut(s) 593, 1164
BstMBI GATC 4 cut(s) 361, 415, 578, 662
BstMWI GCNNNNNNNGC 3 cut(s) 293, 542, 1195
BstNI CCWGG 2 cut(s) 174, 1243
BstNSI RCATGY 1 cut(s) 512
BstSCI CCNGG 4 cut(s) 41, 172, 520, 1241
BstSFI CTRYAG 2 cut(s) 877, 1262
BstV1I GCAGC 2 cut(s) 1248, 1547
BstV2I GAAGAC 1 cut(s) 1412
BstX2I RGATCY 2 cut(s) 361, 415
BstYI RGATCY 2 cut(s) 361, 415
Bsu36I CCTNAGG 1 cut(s) 129
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 2 cut(s) 218, 624
BtsCI GGATG 8 cut(s) 33, 127, 571, 613, 697, 1141, 1222, 1576
BtsIMutI CAGTG 3 cut(s) 261, 407, 469
Cac8I GCNNGC 1 cut(s) 1266
CciI TCATGA 1 cut(s) 871
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 2 cut(s) 125, 254
CseI GACGC 1 cut(s) 1337
Csp6I GTAC 5 cut(s) 39, 697, 774, 819, 936
CviQI GTAC 5 cut(s) 39, 697, 774, 819, 936
DinI GGCGCC 1 cut(s) 546
DpnI GATC 4 cut(s) 363, 417, 580, 664
DpnII GATC 4 cut(s) 361, 415, 578, 662
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
EciI GGCGGA 1 cut(s) 578
Ecl136II GAGCTC 1 cut(s) 1432
Eco130I CCWWGG 3 cut(s) 218, 419, 624
Eco24I GRGCYC 1 cut(s) 1434
Eco31I GGTCTC 1 cut(s) 593
Eco32I GATATC 1 cut(s) 861
Eco47I GGWCC 1 cut(s) 125
Eco53kI GAGCTC 1 cut(s) 1432
Eco57I CTGAAG 1 cut(s) 303
Eco72I CACGTG 1 cut(s) 1544
Eco81I CCTNAGG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 1432
EcoNI CCTNNNNNAGG 1 cut(s) 640
EcoRII CCWGG 2 cut(s) 172, 1241
EcoRV GATATC 1 cut(s) 861
EcoT14I CCWWGG 3 cut(s) 218, 419, 624
EcoT22I ATGCAT 2 cut(s) 1081, 1336
EcoT38I GRGCYC 1 cut(s) 1434
EgeI GGCGCC 1 cut(s) 546
EheI GGCGCC 1 cut(s) 546
ErhI CCWWGG 3 cut(s) 218, 419, 624
FaqI GGGAC 2 cut(s) 385, 684
FauI CCCGC 1 cut(s) 947
FauNDI CATATG 1 cut(s) 1336
FblI GTMKAC 1 cut(s) 888
Fnu4HI GCNGC 2 cut(s) 1262, 1536
FokI GGATG 8 cut(s) 40, 134, 578, 620, 704, 1148, 1229, 1583
FriOI GRGCYC 1 cut(s) 1434
Fsp4HI GCNGC 2 cut(s) 1262, 1536
FspBI CTAG 2 cut(s) 420, 1356
GlaI GCGC 1 cut(s) 546
GluI GCNGC 2 cut(s) 1262, 1536
GsuI CTGGAG 1 cut(s) 1128
HaeII RGCGCY 1 cut(s) 548
HaeIII GGCC 1 cut(s) 255
HapII CCGG 2 cut(s) 42, 521
HgaI GACGC 1 cut(s) 1337
HhaI GCGC 1 cut(s) 547
Hin1I GRCGYC 1 cut(s) 545
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HincII GTYRAC 2 cut(s) 828, 889
HindII GTYRAC 2 cut(s) 828, 889
HindIII AAGCTT 1 cut(s) 193
HinfI GANTC 8 cut(s) 13, 278, 377, 427, 476, 632, 748, 1523
HpaII CCGG 2 cut(s) 42, 521
HphI GGTGA 4 cut(s) 71, 641, 779, 803
Hpy166II GTNNAC 6 cut(s) 261, 556, 828, 889, 1487, 1547
Hpy188I TCNGA 7 cut(s) 12, 283, 337, 481, 1449, 1473, 1500
Hpy188III TCNNGA 5 cut(s) 128, 576, 872, 1125, 1435
Hpy8I GTNNAC 6 cut(s) 261, 556, 828, 889, 1487, 1547
HpyAV CCTTC 5 cut(s) 1126, 1173, 1188, 1249, 1516
HpyCH4III ACNGT 2 cut(s) 773, 1120
HpyCH4IV ACGT 3 cut(s) 1464, 1543, 1555
HpyCH4V TGCA 7 cut(s) 86, 301, 1079, 1264, 1334, 1362, 1426
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 542, 1195
HpySE526I ACGT 3 cut(s) 1464, 1543, 1555
Hsp92I GRCGYC 1 cut(s) 545
HspAI GCGC 1 cut(s) 545
KasI GGCGCC 1 cut(s) 544
KpnI GGTACC 1 cut(s) 42
Kzo9I GATC 4 cut(s) 361, 415, 578, 662
LmnI GCTCC 3 cut(s) 1109, 1258, 1437
Lsp1109I GCAGC 2 cut(s) 1248, 1547
LweI GCATC 2 cut(s) 523, 1066
MaeI CTAG 2 cut(s) 420, 1356
MaeII ACGT 3 cut(s) 1464, 1543, 1555
MaeIII GTNAC 4 cut(s) 767, 911, 1245, 1310
MalI GATC 4 cut(s) 363, 417, 580, 664
MboI GATC 4 cut(s) 361, 415, 578, 662
MboII GAAGA 4 cut(s) 72, 425, 866, 1417
MfeI CAATTG 2 cut(s) 906, 1583
MflI RGATCY 2 cut(s) 361, 415
MhlI GDGCHC 2 cut(s) 1434, 1442
MluCI AATT 9 cut(s) 76, 655, 705, 906, 1064, 1101, 1272, 1340, 1583
Mly113I GGCGCC 1 cut(s) 545
MlyI GAGTC 3 cut(s) 436, 470, 757
MmeI TCCRAC 1 cut(s) 484
Mph1103I ATGCAT 2 cut(s) 1081, 1336
MroXI GAANNNNTTC 2 cut(s) 319, 1505
MseI TTAA 3 cut(s) 354, 1067, 1275
MslI CAYNNNNRTG 1 cut(s) 623
MspI CCGG 2 cut(s) 42, 521
MspR9I CCNGG 4 cut(s) 43, 174, 522, 1243
MunI CAATTG 2 cut(s) 906, 1583
MvaI CCWGG 2 cut(s) 174, 1243
MwoI GCNNNNNNNGC 3 cut(s) 293, 542, 1195
NarI GGCGCC 1 cut(s) 545
NciI CCSGG 2 cut(s) 43, 522
NcoI CCATGG 2 cut(s) 218, 624
NdeI CATATG 1 cut(s) 1336
NdeII GATC 4 cut(s) 361, 415, 578, 662
NlaIV GGNNCC 3 cut(s) 40, 178, 546
NmuCI GTSAC 3 cut(s) 767, 911, 1245
NsiI ATGCAT 2 cut(s) 1081, 1336
NspI RCATGY 1 cut(s) 512
NspV TTCGAA 1 cut(s) 1181
PagI TCATGA 1 cut(s) 871
PdmI GAANNNNTTC 2 cut(s) 319, 1505
PfeI GAWTC 5 cut(s) 13, 278, 377, 632, 1523
PflMI CCANNNNNTGG 1 cut(s) 409
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 2 cut(s) 1263, 1537
PleI GAGTC 3 cut(s) 435, 470, 756
PluTI GGCGCC 1 cut(s) 548
PmaCI CACGTG 1 cut(s) 1544
PmlI CACGTG 1 cut(s) 1544
PpsI GAGTC 3 cut(s) 435, 470, 756
Ppu21I YACGTR 1 cut(s) 1544
PsiI TTATAA 3 cut(s) 516, 597, 843
Psp124BI GAGCTC 1 cut(s) 1434
Psp6I CCWGG 2 cut(s) 172, 1241
PspCI CACGTG 1 cut(s) 1544
PspGI CCWGG 2 cut(s) 172, 1241
PspN4I GGNNCC 3 cut(s) 40, 178, 546
PspPI GGNCC 2 cut(s) 125, 254
PstI CTGCAG 1 cut(s) 1266
PsuI RGATCY 2 cut(s) 361, 415
RsaI GTAC 5 cut(s) 40, 698, 775, 820, 937
RsaNI GTAC 5 cut(s) 39, 697, 774, 819, 936
RseI CAYNNNNRTG 1 cut(s) 623
SacI GAGCTC 1 cut(s) 1434
SalI GTCGAC 1 cut(s) 887
SaqAI TTAA 3 cut(s) 354, 1067, 1275
SatI GCNGC 2 cut(s) 1262, 1536
Sau3AI GATC 4 cut(s) 361, 415, 578, 662
Sau96I GGNCC 2 cut(s) 125, 254
ScaI AGTACT 2 cut(s) 775, 937
SchI GAGTC 3 cut(s) 436, 470, 757
ScrFI CCNGG 4 cut(s) 43, 174, 522, 1243
SduI GDGCHC 2 cut(s) 1434, 1442
SfaNI GCATC 2 cut(s) 523, 1066
SfcI CTRYAG 2 cut(s) 877, 1262
SfoI GGCGCC 1 cut(s) 546
SfuI TTCGAA 1 cut(s) 1181
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 623
Sse9I AATT 9 cut(s) 76, 655, 705, 906, 1064, 1101, 1272, 1340, 1583
SsiI CCGC 2 cut(s) 563, 954
SspDI GGCGCC 1 cut(s) 544
SspMI CTAG 2 cut(s) 420, 1356
SstI GAGCTC 1 cut(s) 1434
StyD4I CCNGG 4 cut(s) 41, 172, 520, 1241
StyI CCWWGG 3 cut(s) 218, 419, 624
TaaI ACNGT 2 cut(s) 773, 1120
TaiI ACGT 3 cut(s) 1467, 1546, 1558
TaqI TCGA 3 cut(s) 751, 888, 1181
TasI AATT 9 cut(s) 76, 655, 705, 906, 1064, 1101, 1272, 1340, 1583
TatI WGTACW 3 cut(s) 696, 773, 935
TfiI GAWTC 5 cut(s) 13, 278, 377, 632, 1523
Tru1I TTAA 3 cut(s) 354, 1067, 1275
Tru9I TTAA 3 cut(s) 354, 1067, 1275
TscAI CASTG 3 cut(s) 268, 414, 469
TseFI GTSAC 3 cut(s) 767, 911, 1245
TseI GCWGC 2 cut(s) 1261, 1535
Tsp45I GTSAC 3 cut(s) 767, 911, 1245
TspDTI ATGAA 8 cut(s) 106, 312, 607, 828, 1017, 1058, 1353, 1587
TspGWI ACGGA 1 cut(s) 1499
TspRI CASTG 3 cut(s) 268, 414, 469
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 125
XagI CCTNNNNNAGG 1 cut(s) 640
XapI RAATTY 1 cut(s) 1340
XceI RCATGY 1 cut(s) 512
XmaJI CCTAGG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 888
XmnI GAANNNNTTC 2 cut(s) 319, 1505
XspI CTAG 2 cut(s) 420, 1356
ZrmI AGTACT 2 cut(s) 775, 937
Zsp2I ATGCAT 2 cut(s) 1081, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.