Rh3DG157900

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0009698
Physical Location & Seq
Reverse (-)
13584654 .. 13588287
3634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG157900.1

Sequence Viewer

Length: 1542 bp
ATGGCAAAGGGTACCGGGGGTGTAAATGATGGTGAGAGGCTTTATGATAATTCTTCTGCAACTGAGCCTAAGCGTTCTCATCAATGGTTCATGGATGGTCCTGAGGTAGAGTTATTCCCAAACAAGAAACAGGCTATTGAAGTTCCAGGCACCAATCTATTTTCAAGCTTGTTGAACGCAAATGTTTCTCCATGGGGAAATGTTCCCAGTTTTCAGTCATTCTCTGGCCCGTTCACTGAAAGGTTATTTGATTCTGAAGCAGACAGAGCCGTGCATTTTGAGGACAGAAACATTTCATCAGTTGGCTCAGAAAAAATGAGAAAAGTTAATGAGGATCTATTTGGGAATGATTCCTCTTTTGGTTTATCTATGTCCCATTCACTGGAAGATCCTAGGTTGAGTCCTAACTATGGTGGTTTTAGAAAAGTGAAAGTCAGTGAGGTAAAGGACTCTGAGAATGTCATGCGTGTTTCGGTTGGACATGCTTATAATCCGGGAGATAATGATGCCATGTTGGCGCCTCATGTTTACAAGGCGGATGACAACTCAGGATCAATGGGTCTCACTTATAAGAAAGAGGATGAGAACTTCATAACCATGGGTGATTCCTATAATAGGGCAGATAACAATTTTAGATCAATGGGACAACCCTTTACTAAAGGGGATGAGTACATAGGAATTGGTCAAACATACAAGGAGAATAGTAATACCCTATTGAGGAGTCGAACATTCAACAAGGGTGACAGTACTATCATCTCGGTTGGTGAAACCTACAACAAGGCAGATGAAAGTACCATGTCAACTGGTCATATTTATAATAAAGGGGAAGAGATATCAATGGGTCATGACTATAGCAAGGTCGACAATAATATGTTGTCAATTGGTCACTCTTACAATAAGGGAGAGAGTACTATCATATCCTTTGGCGGGTGTGATGATGATGATGATGTAAATACCTCAACAATCTCTGGCTATGAACTTCTTATGGGTCAATCTTTTCCAAAAACAGAAGCTATGAATGAGAAAGACTTGGGTAAATTAAATGCTGATGCATTTGTAAATCAACCTCATATAATTGCTGGAGCTGAAACTGTTTCCAGAAAGAAGGATGACCAGAAAATGTCTAAGAAGTCTCCTTCAAACAACTTCCCTTCGAATGTGCGAAGTTTGCTATCAACTGGTATGCTGGATGGAGTTCCTGTAAAGTATATTGCCTGGTCACGGGAGAAGGAGCTGCAGGCTGTAATTAAAGGTTCTGGGTATCTATGTGGCTGTCAGTCATGTAACTTCTCTAAGGTAATCAATGCATATGAATTTGAGCGTCATGCTAGTTGCAAAACAAAACACCCAAATAACCACATTTATTTTGAGAATGGGAAGACCATCTATGGGATTGTGCAAGAGCTCAGGAGCACACCTCAGAATATGTTGTTTGACGTTATTCAGACTATTACTGGTTCACAAATCAATCAGAAATCCTTCCGTCTTTGGAAAGGTGAAGTTATTAGTTATCTCCTTAGTATTTCTGCCTTGCGCCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas

Protein Analysis

513

Amino Acids

56.99

Weight (kDa)

5.73

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 415 - 468 2.6e-13 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 489, 570, 816
Acc65I GGTACC 1 cut(s) 11
AccB1I GGYRCC 3 cut(s) 11, 149, 517
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 1 cut(s) 861
AciI CCGC 2 cut(s) 536, 927
AclWI GGATC 3 cut(s) 342, 383, 559
AcsI RAATTY 1 cut(s) 1313
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 518
AfaI GTAC 5 cut(s) 13, 671, 748, 793, 910
AfiI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 927, 1221, 1389
AgsI TTSAA 5 cut(s) 140, 165, 175, 733, 1140
AjnI CCWGG 2 cut(s) 145, 1214
AluBI AGCT 5 cut(s) 168, 1013, 1085, 1234, 1405
AluI AGCT 5 cut(s) 168, 1013, 1085, 1234, 1405
Alw21I GWGCWC 2 cut(s) 1407, 1415
Alw26I GTCTC 2 cut(s) 566, 1137
AlwI GGATC 3 cut(s) 342, 383, 559
AoxI GGCC 1 cut(s) 226
ApeKI GCWGC 1 cut(s) 1234
ApoI RAATTY 1 cut(s) 1313
Asp700I GAANNNNTTC 2 cut(s) 292, 1478
Asp718I GGTACC 1 cut(s) 11
AspA2I CCTAGG 1 cut(s) 392
AspLEI GCGC 2 cut(s) 520, 1536
AspS9I GGNCC 2 cut(s) 98, 227
AsuC2I CCSGG 2 cut(s) 16, 495
AsuHPI GGTGA 5 cut(s) 44, 614, 752, 776, 1508
AsuII TTCGAA 1 cut(s) 1154
AvaII GGWCC 1 cut(s) 98
AvrII CCTAGG 1 cut(s) 392
AxyI CCTNAGG 1 cut(s) 102
BanI GGYRCC 3 cut(s) 11, 149, 517
BanII GRGCYC 1 cut(s) 1407
BbsI GAAGAC 1 cut(s) 1385
Bbv12I GWGCWC 2 cut(s) 1407, 1415
BbvI GCAGC 1 cut(s) 1221
BccI CCATC 4 cut(s) 23, 89, 1184, 1391
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 2 cut(s) 147, 1216
BcnI CCSGG 2 cut(s) 16, 495
BcoDI GTCTC 2 cut(s) 566, 1137
BfaI CTAG 2 cut(s) 393, 1329
BfmI CTRYAG 2 cut(s) 850, 1235
BfoI RGCGCY 1 cut(s) 521
BglI GCCNNNNNGGC 1 cut(s) 515
BisI GCNGC 1 cut(s) 1235
BlnI CCTAGG 1 cut(s) 392
BlsI GCNGC 1 cut(s) 1236
BmcAI AGTACT 2 cut(s) 748, 910
Bme1390I CCNGG 4 cut(s) 16, 147, 495, 1216
Bme18I GGWCC 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 98, 227
BmiI GGNNCC 3 cut(s) 13, 151, 519
BmrFI CCNGG 4 cut(s) 16, 147, 495, 1216
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 2 cut(s) 496, 1039
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 1385
BplI GAGNNNNNCTC 2 cut(s) 1402, 1434
BpmI CTGGAG 1 cut(s) 1101
Bpu10I CCTNAGC 2 cut(s) 69, 1406
Bpu14I TTCGAA 1 cut(s) 1154
BpuMI CCSGG 2 cut(s) 16, 495
BsaHI GRCGYC 1 cut(s) 518
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 4 cut(s) 15, 191, 392, 597
BsaXI ACNNNNNCTCC 2 cut(s) 1185, 1215
Bsc4I CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 927, 1221, 1389
Bse1I ACTGG 5 cut(s) 207, 387, 808, 1183, 1459
Bse21I CCTNAGG 1 cut(s) 102
BseBI CCWGG 2 cut(s) 147, 1216
BseDI CCNNGG 4 cut(s) 15, 191, 392, 597
BseGI GGATG 6 cut(s) 100, 544, 586, 670, 1114, 1195
BseLI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 927, 1221, 1389
BseMII CTCAG 7 cut(s) 54, 93, 321, 444, 561, 1420, 1433
BseNI ACTGG 5 cut(s) 207, 387, 808, 1183, 1459
BseRI GAGGAG 1 cut(s) 733
BseXI GCAGC 1 cut(s) 1221
BshFI GGCC 1 cut(s) 228
BshNI GGYRCC 3 cut(s) 11, 149, 517
BsiHKAI GWGCWC 2 cut(s) 1407, 1415
BsiSI CCGG 2 cut(s) 15, 494
BslFI GGGAC 2 cut(s) 358, 657
BslI CCNNNNNNNGG 7 cut(s) 382, 410, 615, 717, 927, 1221, 1389
BsmAI GTCTC 2 cut(s) 566, 1137
BsmFI GGGAC 2 cut(s) 358, 657
BsnI GGCC 1 cut(s) 228
Bso31I GGTCTC 1 cut(s) 566
Bsp119I TTCGAA 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 1407, 1415
Bsp143I GATC 4 cut(s) 334, 388, 551, 635
Bsp19I CCATGG 2 cut(s) 191, 597
BspACI CCGC 2 cut(s) 536, 927
BspANI GGCC 1 cut(s) 228
BspCNI CTCAG 7 cut(s) 55, 94, 320, 445, 560, 1419, 1432
BspHI TCATGA 1 cut(s) 844
BspLI GGNNCC 3 cut(s) 13, 151, 519
BspMAI CTGCAG 1 cut(s) 1239
BspPI GGATC 3 cut(s) 342, 383, 559
BspT104I TTCGAA 1 cut(s) 1154
BspT107I GGYRCC 3 cut(s) 11, 149, 517
BspTNI GGTCTC 1 cut(s) 566
BsrI ACTGG 5 cut(s) 207, 387, 808, 1183, 1459
BssECI CCNNGG 4 cut(s) 15, 191, 392, 597
BssMI GATC 4 cut(s) 334, 388, 551, 635
BssNI GRCGYC 1 cut(s) 518
BssT1I CCWWGG 3 cut(s) 191, 392, 597
Bst2UI CCWGG 2 cut(s) 147, 1216
Bst4CI ACNGT 2 cut(s) 746, 1093
Bst6I CTCTTC 1 cut(s) 822
BstACI GRCGYC 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 1154
BstC8I GCNNGC 1 cut(s) 1239
BstDSI CCRYGG 2 cut(s) 191, 597
BstENI CCTNNNNNAGG 1 cut(s) 613
BstF5I GGATG 6 cut(s) 100, 544, 586, 670, 1114, 1195
BstH2I RGCGCY 1 cut(s) 521
BstHHI GCGC 2 cut(s) 520, 1536
BstKTI GATC 4 cut(s) 337, 391, 554, 638
BstMAI GTCTC 2 cut(s) 566, 1137
BstMBI GATC 4 cut(s) 334, 388, 551, 635
BstMWI GCNNNNNNNGC 3 cut(s) 266, 515, 1168
BstNI CCWGG 2 cut(s) 147, 1216
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 4 cut(s) 14, 145, 493, 1214
BstSFI CTRYAG 2 cut(s) 850, 1235
BstV1I GCAGC 1 cut(s) 1221
BstV2I GAAGAC 1 cut(s) 1385
BstX2I RGATCY 2 cut(s) 334, 388
BstYI RGATCY 2 cut(s) 334, 388
Bsu36I CCTNAGG 1 cut(s) 102
BsuRI GGCC 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 191, 597
BtsCI GGATG 6 cut(s) 100, 544, 586, 670, 1114, 1195
BtsIMutI CAGTG 3 cut(s) 234, 380, 442
Cac8I GCNNGC 1 cut(s) 1239
CciI TCATGA 1 cut(s) 844
CfoI GCGC 2 cut(s) 520, 1536
Cfr13I GGNCC 2 cut(s) 98, 227
CseI GACGC 1 cut(s) 1310
Csp6I GTAC 5 cut(s) 12, 670, 747, 792, 909
CviQI GTAC 5 cut(s) 12, 670, 747, 792, 909
DinI GGCGCC 1 cut(s) 519
DpnI GATC 4 cut(s) 336, 390, 553, 637
DpnII GATC 4 cut(s) 334, 388, 551, 635
Eam1104I CTCTTC 1 cut(s) 822
EarI CTCTTC 1 cut(s) 822
EciI GGCGGA 1 cut(s) 551
Ecl136II GAGCTC 1 cut(s) 1405
Eco130I CCWWGG 3 cut(s) 191, 392, 597
Eco24I GRGCYC 1 cut(s) 1407
Eco31I GGTCTC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 834
Eco47I GGWCC 1 cut(s) 98
Eco53kI GAGCTC 1 cut(s) 1405
Eco57I CTGAAG 1 cut(s) 276
Eco81I CCTNAGG 1 cut(s) 102
EcoICRI GAGCTC 1 cut(s) 1405
EcoNI CCTNNNNNAGG 1 cut(s) 613
EcoRII CCWGG 2 cut(s) 145, 1214
EcoRV GATATC 1 cut(s) 834
EcoT14I CCWWGG 3 cut(s) 191, 392, 597
EcoT22I ATGCAT 2 cut(s) 1054, 1309
EcoT38I GRGCYC 1 cut(s) 1407
EgeI GGCGCC 1 cut(s) 519
EheI GGCGCC 1 cut(s) 519
ErhI CCWWGG 3 cut(s) 191, 392, 597
FaqI GGGAC 2 cut(s) 358, 657
FauI CCCGC 1 cut(s) 920
FauNDI CATATG 1 cut(s) 1309
FblI GTMKAC 1 cut(s) 861
Fnu4HI GCNGC 1 cut(s) 1235
FokI GGATG 6 cut(s) 107, 551, 593, 677, 1121, 1202
FriOI GRGCYC 1 cut(s) 1407
Fsp4HI GCNGC 1 cut(s) 1235
FspBI CTAG 2 cut(s) 393, 1329
GlaI GCGC 2 cut(s) 519, 1535
GluI GCNGC 1 cut(s) 1235
GsuI CTGGAG 1 cut(s) 1101
HaeII RGCGCY 1 cut(s) 521
HaeIII GGCC 1 cut(s) 228
HapII CCGG 2 cut(s) 15, 494
HgaI GACGC 1 cut(s) 1310
HhaI GCGC 2 cut(s) 520, 1536
Hin1I GRCGYC 1 cut(s) 518
Hin6I GCGC 2 cut(s) 518, 1534
HinP1I GCGC 2 cut(s) 518, 1534
HincII GTYRAC 2 cut(s) 801, 862
HindII GTYRAC 2 cut(s) 801, 862
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 6 cut(s) 251, 350, 400, 449, 605, 721
HpaII CCGG 2 cut(s) 15, 494
HphI GGTGA 5 cut(s) 44, 614, 752, 776, 1508
Hpy166II GTNNAC 5 cut(s) 234, 529, 801, 862, 1460
Hpy188I TCNGA 6 cut(s) 256, 310, 454, 1422, 1446, 1473
Hpy188III TCNNGA 5 cut(s) 101, 549, 845, 1098, 1408
Hpy8I GTNNAC 5 cut(s) 234, 529, 801, 862, 1460
HpyAV CCTTC 5 cut(s) 1099, 1146, 1161, 1222, 1489
HpyCH4III ACNGT 2 cut(s) 746, 1093
HpyCH4IV ACGT 1 cut(s) 1437
HpyCH4V TGCA 7 cut(s) 59, 274, 1052, 1237, 1307, 1335, 1399
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 515, 1168
HpySE526I ACGT 1 cut(s) 1437
Hsp92I GRCGYC 1 cut(s) 518
HspAI GCGC 2 cut(s) 518, 1534
KasI GGCGCC 1 cut(s) 517
KpnI GGTACC 1 cut(s) 15
Kzo9I GATC 4 cut(s) 334, 388, 551, 635
LmnI GCTCC 3 cut(s) 1082, 1231, 1410
Lsp1109I GCAGC 1 cut(s) 1221
LweI GCATC 2 cut(s) 496, 1039
MaeI CTAG 2 cut(s) 393, 1329
MaeII ACGT 1 cut(s) 1437
MaeIII GTNAC 4 cut(s) 740, 884, 1218, 1283
MalI GATC 4 cut(s) 336, 390, 553, 637
MboI GATC 4 cut(s) 334, 388, 551, 635
MboII GAAGA 4 cut(s) 45, 398, 839, 1390
MfeI CAATTG 1 cut(s) 879
MflI RGATCY 2 cut(s) 334, 388
MhlI GDGCHC 2 cut(s) 1407, 1415
MluCI AATT 8 cut(s) 49, 628, 678, 879, 1037, 1074, 1245, 1313
Mly113I GGCGCC 1 cut(s) 518
MlyI GAGTC 3 cut(s) 409, 443, 730
MmeI TCCRAC 1 cut(s) 457
Mph1103I ATGCAT 2 cut(s) 1054, 1309
MroXI GAANNNNTTC 2 cut(s) 292, 1478
MseI TTAA 3 cut(s) 327, 1040, 1248
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 2 cut(s) 15, 494
MspR9I CCNGG 4 cut(s) 16, 147, 495, 1216
MunI CAATTG 1 cut(s) 879
MvaI CCWGG 2 cut(s) 147, 1216
MwoI GCNNNNNNNGC 3 cut(s) 266, 515, 1168
NarI GGCGCC 1 cut(s) 518
NciI CCSGG 2 cut(s) 16, 495
NcoI CCATGG 2 cut(s) 191, 597
NdeI CATATG 1 cut(s) 1309
NdeII GATC 4 cut(s) 334, 388, 551, 635
NlaIV GGNNCC 3 cut(s) 13, 151, 519
NmuCI GTSAC 3 cut(s) 740, 884, 1218
NsiI ATGCAT 2 cut(s) 1054, 1309
NspI RCATGY 1 cut(s) 485
NspV TTCGAA 1 cut(s) 1154
PagI TCATGA 1 cut(s) 844
PdmI GAANNNNTTC 2 cut(s) 292, 1478
PfeI GAWTC 3 cut(s) 251, 350, 605
PflMI CCANNNNNTGG 1 cut(s) 382
PfoI TCCNGGA 1 cut(s) 493
PkrI GCNGC 1 cut(s) 1236
PleI GAGTC 3 cut(s) 408, 443, 729
PluTI GGCGCC 1 cut(s) 521
PpsI GAGTC 3 cut(s) 408, 443, 729
PsiI TTATAA 3 cut(s) 489, 570, 816
Psp124BI GAGCTC 1 cut(s) 1407
Psp6I CCWGG 2 cut(s) 145, 1214
PspGI CCWGG 2 cut(s) 145, 1214
PspN4I GGNNCC 3 cut(s) 13, 151, 519
PspPI GGNCC 2 cut(s) 98, 227
PstI CTGCAG 1 cut(s) 1239
PsuI RGATCY 2 cut(s) 334, 388
RsaI GTAC 5 cut(s) 13, 671, 748, 793, 910
RsaNI GTAC 5 cut(s) 12, 670, 747, 792, 909
RseI CAYNNNNRTG 1 cut(s) 596
SacI GAGCTC 1 cut(s) 1407
SalI GTCGAC 1 cut(s) 860
SaqAI TTAA 3 cut(s) 327, 1040, 1248
SatI GCNGC 1 cut(s) 1235
Sau3AI GATC 4 cut(s) 334, 388, 551, 635
Sau96I GGNCC 2 cut(s) 98, 227
ScaI AGTACT 2 cut(s) 748, 910
SchI GAGTC 3 cut(s) 409, 443, 730
ScrFI CCNGG 4 cut(s) 16, 147, 495, 1216
SduI GDGCHC 2 cut(s) 1407, 1415
SfaNI GCATC 2 cut(s) 496, 1039
SfcI CTRYAG 2 cut(s) 850, 1235
SfoI GGCGCC 1 cut(s) 519
SfuI TTCGAA 1 cut(s) 1154
SinI GGWCC 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 596
Sse9I AATT 8 cut(s) 49, 628, 678, 879, 1037, 1074, 1245, 1313
SsiI CCGC 2 cut(s) 536, 927
SspDI GGCGCC 1 cut(s) 517
SspMI CTAG 2 cut(s) 393, 1329
SstI GAGCTC 1 cut(s) 1407
StyD4I CCNGG 4 cut(s) 14, 145, 493, 1214
StyI CCWWGG 3 cut(s) 191, 392, 597
TaaI ACNGT 2 cut(s) 746, 1093
TaiI ACGT 1 cut(s) 1440
TaqI TCGA 3 cut(s) 724, 861, 1154
TasI AATT 8 cut(s) 49, 628, 678, 879, 1037, 1074, 1245, 1313
TatI WGTACW 3 cut(s) 669, 746, 908
TfiI GAWTC 3 cut(s) 251, 350, 605
Tru1I TTAA 3 cut(s) 327, 1040, 1248
Tru9I TTAA 3 cut(s) 327, 1040, 1248
TscAI CASTG 3 cut(s) 241, 387, 442
TseFI GTSAC 3 cut(s) 740, 884, 1218
TseI GCWGC 1 cut(s) 1234
Tsp45I GTSAC 3 cut(s) 740, 884, 1218
TspDTI ATGAA 7 cut(s) 79, 285, 580, 801, 990, 1031, 1326
TspGWI ACGGA 1 cut(s) 1472
TspRI CASTG 3 cut(s) 241, 387, 442
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 98
XagI CCTNNNNNAGG 1 cut(s) 613
XapI RAATTY 1 cut(s) 1313
XceI RCATGY 1 cut(s) 485
XmaJI CCTAGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 861
XmnI GAANNNNTTC 2 cut(s) 292, 1478
XspI CTAG 2 cut(s) 393, 1329
ZrmI AGTACT 2 cut(s) 748, 910
Zsp2I ATGCAT 2 cut(s) 1054, 1309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.