Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009698

Physical Location & Seq

Genomic Coordinates Forward (+)

24515982 .. 24519645

Gene Structure 3664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGTCTTTTCAGAATCAGGGATTTTGGATGCCAAAGGGTACCGGCTGTTTAAATGAAGGTGAGGCGCTGTATGATAATTCTCCTAGGATTGAACCTAAGCGTTCTCATCAGTGGTTCATGGATGGCCCTGAGGTAGAGCTATTCCCCAACAAGAAACAGGCTGTTGAAGTTCCAAACAACAATCTATTTTCAGGAATGTTAAACGCAAATGTTTCTCCATGGGGGAATGTTCCCAGTTTTCACTCATTCTCTGGCCATTTCACTGAAAGGTTATTTGATTCTGAAACAGACCGAGCGGTGAATTTTGATGATAGAAACATTCCCGCAGCTGAAACTGAAAAGATGAACTTGGCTAGAAAAGGTAATGAGGATCTATTTGGGAATGATTCCTCATTTGGTTTATCTATGTCGCATACACTGGAAGATCCTAGAACAAGTCCTAATTATGGTGGGTTTAGAAAAGTCAAAGTTAGTGAGGTAAAGGACTCTGAGAATGTCATGCCTGTTTCGATTGGACATGCTTATAATCAGGGGGATAATGGTGCCATGTTGGCAGCTCATGTTTACAAGGCCGATGACAACACAGCATCAATGGGTCTTGCTTATAAGAAAGGGGATGACAGCTTCATATCTATGAGTGATAACTATAACAGGGCAGATAACAATTTCATATCAATGGGACAACCCTTTAACAAAGGGGATGAAAACATATCAATTGGTCAAACATACAAGGAGAGTAATAACACCCTATCAATGGGTCAGACATTCAACAAGGGTGACAATAATATCATCTCTATTGGTCAAACCTACAATAAGGTAGAGGAAAGTACCATATCAGCTGGTCATATCTACAATAAAGGGGAAGACAGTACCATATCAATGGGTCATGCCTACAGCAAGGGTGACAGCAATATGTTATCAATTGGTCACTCTTATAACAACCGAGAAAGTACTATCATATCCTTTGGCGGATATGATGATGATGATGCACATACCTCGGCAATCTCTGGTTATGAACTTCTTATGGGTCAACCATTTCCAAAAACAGAAGCTATGAATGAGAAAGAGTTGGGCAAATCAAATGCTGATGCACTTGTCAATTTACCTCATATAACTGCTGGAAATGAAAATATTTCTAAAAAGAAAGTTGAACAAAAAATGTCCAAGAAGGTTCCTCCAAACAACTTCCCTTCAAATGTGCGAAGTTTGCTATCAACTGGTATGCTGGATGGAGTTCCTGTAAAGTATACTGCCTGGTCGCGGGAGAAGGAGCTGCAGGGTGTGATTAAAGGATCTGGGTATCTATGTGGTTGTCAGTCATGCGACTTCTCCAAGGTAATCAATGCATATGAATTTGAGCGTCATGCTGGTTGCAAAACAAAACACCCAAATAATCACATATATTTTGAGAATGGGAAGACTATCTATGGGATTGTACAAGAGCTCAGGAGCACACCCCAGAATATGTTGTTTGAAGTTATTCAGACTATTACTGGTTCACCTATCAATCAGAAATCCTTCCGTCTTTGGAAAGAATCCTTTTTGGCAGCAACACGGGAACTTCAGCGTATATATGGCAAGGATGAGGGGAAGCAATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas

Protein Analysis

535

Amino Acids

59.38

Weight (kDa)

5.83

Isoelectric Point (pI)

44.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009698)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14380 FvH4_6g14380 FvH4_6g14380 FvH4_6g14380 FvH4_6g14380
malus_domestica	MD04G1120300.v1.1 MD12G1137600.v1.1
prunus_persica	Prupe.6G249500_v2.0.a1 Prupe.6G249500_v2.0.a1
pyrus_communis	pycom04g10940 pycom12g13160
rosa_chinensis	RchiOBHm_Chr3g0467441
rosa_laevigata	RLG00000024504
rosa_multiflora	Rmu_sc0001601.1_g000005
rosa_roxburghii	Rroxscaffold_6G00413670
rosa_rugosa	Rorug03G0087000 Rorug03G0087100 Rorug03G0087100
rosa_samantha	Rh3BG157100 Rh3CG157000 Rh3DG157900
rosa_wichuraiana	Rw3G012860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	525, 606, 936
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	2 cut(s)	38, 542
AccBSI	CCGCTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	1247
AccII	CGCG	1 cut(s)	1261
AciI	CCGC	4 cut(s)	296, 324, 969, 1261
AclWI	GGATC	3 cut(s)	378, 419, 1300
AcoI	YGGCCR	1 cut(s)	253
AcsI	RAATTY	2 cut(s)	301, 1352
AcuI	CTGAAG	1 cut(s)	1547
AfaI	GTAC	5 cut(s)	40, 829, 871, 952, 1437
AfiI	CCNNNNNNNGG	3 cut(s)	446, 754, 1260
AgsI	TTSAA	6 cut(s)	92, 167, 769, 1151, 1194, 1475
AjnI	CCWGG	1 cut(s)	1253
AluBI	AGCT	8 cut(s)	139, 329, 557, 624, 839, 1052, 1273, 1444
AluI	AGCT	8 cut(s)	139, 329, 557, 624, 839, 1052, 1273, 1444
Alw21I	GWGCWC	2 cut(s)	1446, 1454
AlwI	GGATC	3 cut(s)	378, 419, 1300
AoxI	GGCC	3 cut(s)	124, 253, 570
ApeKI	GCWGC	4 cut(s)	326, 554, 1273, 1547
ApoI	RAATTY	2 cut(s)	301, 1352
Asp700I	GAANNNNTTC	2 cut(s)	1479, 1517
Asp718I	GGTACC	1 cut(s)	38
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	5 cut(s)	71, 310, 788, 914, 1491
AvrII	CCTAGG	1 cut(s)	83
AxyI	CCTNAGG	1 cut(s)	129
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	2 cut(s)	38, 542
BanII	GRGCYC	1 cut(s)	1446
BbsI	GAAGAC	2 cut(s)	870, 1424
Bbv12I	GWGCWC	2 cut(s)	1446, 1454
BbvI	GCAGC	4 cut(s)	338, 566, 1260, 1559
BccI	CCATC	2 cut(s)	116, 1223
BcgI	CGANNNNNNTGC	2 cut(s)	978, 1012
BciT130I	CCWGG	1 cut(s)	1255
BfaI	CTAG	3 cut(s)	84, 354, 429
BfmI	CTRYAG	2 cut(s)	892, 1274
BfoI	RGCGCY	1 cut(s)	68
BglI	GCCNNNNNGGC	1 cut(s)	551
BisI	GCNGC	4 cut(s)	327, 555, 1274, 1548
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	4 cut(s)	328, 556, 1275, 1549
BmcAI	AGTACT	1 cut(s)	952
Bme1390I	CCNGG	1 cut(s)	1255
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	3 cut(s)	40, 544, 1173
BmrFI	CCNGG	1 cut(s)	1255
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	4 cut(s)	18, 596, 976, 1078
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	870, 1424
Bpu10I	CCTNAGC	2 cut(s)	96, 1445
BsaJI	CCNNGG	4 cut(s)	83, 218, 996, 1332
BsaXI	ACNNNNNCTCC	2 cut(s)	1224, 1254
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 754, 1260
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	4 cut(s)	234, 423, 1222, 1498
Bse21I	CCTNAGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	1255
BseDI	CCNNGG	4 cut(s)	83, 218, 996, 1332
BseGI	GGATG	6 cut(s)	33, 127, 622, 706, 1234, 1588
BseLI	CCNNNNNNNGG	3 cut(s)	446, 754, 1260
BseMII	CTCAG	3 cut(s)	120, 480, 1459
BseNI	ACTGG	4 cut(s)	234, 423, 1222, 1498
BseXI	GCAGC	4 cut(s)	338, 566, 1260, 1559
Bsh1236I	CGCG	1 cut(s)	1261
BshFI	GGCC	3 cut(s)	126, 255, 572
BshNI	GGYRCC	2 cut(s)	38, 542
BsiHKAI	GWGCWC	2 cut(s)	1446, 1454
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	3 cut(s)	446, 754, 1260
BsmFI	GGGAC	1 cut(s)	693
BsnI	GGCC	3 cut(s)	126, 255, 572
Bsp1286I	GDGCHC	2 cut(s)	1446, 1454
Bsp1407I	TGTACA	1 cut(s)	1435
Bsp143I	GATC	3 cut(s)	370, 424, 1292
Bsp19I	CCATGG	1 cut(s)	218
BspACI	CCGC	4 cut(s)	296, 324, 969, 1261
BspANI	GGCC	3 cut(s)	126, 255, 572
BspCNI	CTCAG	3 cut(s)	121, 481, 1458
BspFNI	CGCG	1 cut(s)	1261
BspHI	TCATGA	1 cut(s)	1601
BspLI	GGNNCC	3 cut(s)	40, 544, 1173
BspMAI	CTGCAG	1 cut(s)	1278
BspPI	GGATC	3 cut(s)	378, 419, 1300
BspT107I	GGYRCC	2 cut(s)	38, 542
BsrBI	CCGCTC	1 cut(s)	296
BsrFI	RCCGGY	1 cut(s)	41
BsrGI	TGTACA	1 cut(s)	1435
BsrI	ACTGG	4 cut(s)	234, 423, 1222, 1498
BssAI	RCCGGY	1 cut(s)	41
BssECI	CCNNGG	4 cut(s)	83, 218, 996, 1332
BssMI	GATC	3 cut(s)	370, 424, 1292
BssNAI	GTATAC	1 cut(s)	1248
BssT1I	CCWWGG	3 cut(s)	83, 218, 1332
Bst1107I	GTATAC	1 cut(s)	1248
Bst2UI	CCWGG	1 cut(s)	1255
Bst4CI	ACNGT	1 cut(s)	869
BstAUI	TGTACA	1 cut(s)	1435
BstDEI	CTNAG	4 cut(s)	96, 129, 489, 1445
BstDSI	CCRYGG	1 cut(s)	218
BstF5I	GGATG	6 cut(s)	33, 127, 622, 706, 1234, 1588
BstFNI	CGCG	1 cut(s)	1261
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	3 cut(s)	373, 427, 1295
BstMBI	GATC	3 cut(s)	370, 424, 1292
BstMWI	GCNNNNNNNGC	2 cut(s)	551, 1207
BstNI	CCWGG	1 cut(s)	1255
BstNSI	RCATGY	1 cut(s)	521
BstSCI	CCNGG	1 cut(s)	1253
BstSFI	CTRYAG	2 cut(s)	892, 1274
BstUI	CGCG	1 cut(s)	1261
BstV1I	GCAGC	4 cut(s)	338, 566, 1260, 1559
BstV2I	GAAGAC	2 cut(s)	870, 1424
BstX2I	RGATCY	3 cut(s)	370, 424, 1292
BstXI	CCANNNNNNTGG	1 cut(s)	880
BstYI	RGATCY	3 cut(s)	370, 424, 1292
BstZ17I	GTATAC	1 cut(s)	1248
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	126, 255, 572
BtgI	CCRYGG	1 cut(s)	218
BtsCI	GGATG	6 cut(s)	33, 127, 622, 706, 1234, 1588
BtsIMutI	CAGTG	3 cut(s)	116, 261, 416
CciI	TCATGA	1 cut(s)	1601
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	1349
Csp6I	GTAC	5 cut(s)	39, 828, 870, 951, 1436
CviQI	GTAC	5 cut(s)	39, 828, 870, 951, 1436
DdeI	CTNAG	4 cut(s)	96, 129, 489, 1445
DpnI	GATC	3 cut(s)	372, 426, 1294
DpnII	GATC	3 cut(s)	370, 424, 1292
DraI	TTTAAA	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	984
Ecl136II	GAGCTC	1 cut(s)	1444
Eco130I	CCWWGG	3 cut(s)	83, 218, 1332
Eco24I	GRGCYC	1 cut(s)	1446
Eco53kI	GAGCTC	1 cut(s)	1444
Eco57I	CTGAAG	1 cut(s)	1547
Eco81I	CCTNAGG	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	1444
EcoRII	CCWGG	1 cut(s)	1253
EcoT14I	CCWWGG	3 cut(s)	83, 218, 1332
EcoT22I	ATGCAT	1 cut(s)	1348
EcoT38I	GRGCYC	1 cut(s)	1446
ErhI	CCWWGG	3 cut(s)	83, 218, 1332
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	693
FauI	CCCGC	2 cut(s)	331, 1254
FauNDI	CATATG	1 cut(s)	1348
FblI	GTMKAC	1 cut(s)	1247
Fnu4HI	GCNGC	4 cut(s)	327, 555, 1274, 1548
FokI	GGATG	6 cut(s)	40, 134, 629, 713, 1241, 1595
FriOI	GRGCYC	1 cut(s)	1446
Fsp4HI	GCNGC	4 cut(s)	327, 555, 1274, 1548
FspBI	CTAG	3 cut(s)	84, 354, 429
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	327, 555, 1274, 1548
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	3 cut(s)	126, 255, 572
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	1349
HhaI	GCGC	1 cut(s)	67
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	1031
HindII	GTYRAC	1 cut(s)	1031
HinfI	GANTC	5 cut(s)	13, 278, 386, 485, 1535
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	5 cut(s)	71, 310, 788, 914, 1491
Hpy166II	GTNNAC	4 cut(s)	565, 1031, 1248, 1499
Hpy188I	TCNGA	6 cut(s)	12, 283, 490, 762, 1485, 1512
Hpy188III	TCNNGA	3 cut(s)	192, 1447, 1602
Hpy8I	GTNNAC	4 cut(s)	565, 1031, 1248, 1499
HpyAV	CCTTC	5 cut(s)	50, 1162, 1200, 1261, 1528
HpyCH4III	ACNGT	1 cut(s)	869
HpyCH4V	TGCA	5 cut(s)	989, 1091, 1276, 1346, 1374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	551, 1207
HpyF3I	CTNAG	4 cut(s)	96, 129, 489, 1445
HspAI	GCGC	1 cut(s)	65
KpnI	GGTACC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	370, 424, 1292
LmnI	GCTCC	2 cut(s)	1270, 1449
Lsp1109I	GCAGC	4 cut(s)	338, 566, 1260, 1559
LweI	GCATC	4 cut(s)	18, 596, 976, 1078
MaeI	CTAG	3 cut(s)	84, 354, 429
MaeIII	GTNAC	3 cut(s)	776, 902, 926
MalI	GATC	3 cut(s)	372, 426, 1294
MbiI	CCGCTC	1 cut(s)	296
MboI	GATC	3 cut(s)	370, 424, 1292
MboII	GAAGA	3 cut(s)	434, 875, 1429
MfeI	CAATTG	2 cut(s)	714, 921
MflI	RGATCY	3 cut(s)	370, 424, 1292
MhlI	GDGCHC	2 cut(s)	1446, 1454
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	9 cut(s)	76, 301, 442, 664, 714, 921, 1099, 1352, 1595
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	479
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	1348
MroXI	GAANNNNTTC	2 cut(s)	1479, 1517
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	4 cut(s)	50, 200, 690, 1287
MslI	CAYNNNNRTG	3 cut(s)	632, 674, 878
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	329, 839
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	1255
MunI	CAATTG	2 cut(s)	714, 921
MvaI	CCWGG	1 cut(s)	1255
MvnI	CGCG	1 cut(s)	1261
MwoI	GCNNNNNNNGC	2 cut(s)	551, 1207
NcoI	CCATGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	1348
NdeII	GATC	3 cut(s)	370, 424, 1292
NlaIV	GGNNCC	3 cut(s)	40, 544, 1173
NmeAIII	GCCGAG	1 cut(s)	977
NmuCI	GTSAC	3 cut(s)	776, 902, 926
NsiI	ATGCAT	1 cut(s)	1348
NspI	RCATGY	1 cut(s)	521
PagI	TCATGA	1 cut(s)	1601
PdmI	GAANNNNTTC	2 cut(s)	1479, 1517
PfeI	GAWTC	4 cut(s)	13, 278, 386, 1535
PkrI	GCNGC	4 cut(s)	328, 556, 1275, 1549
PleI	GAGTC	1 cut(s)	479
PpsI	GAGTC	1 cut(s)	479
PsiI	TTATAA	3 cut(s)	525, 606, 936
Psp124BI	GAGCTC	1 cut(s)	1446
Psp6I	CCWGG	1 cut(s)	1253
PspGI	CCWGG	1 cut(s)	1253
PspN4I	GGNNCC	3 cut(s)	40, 544, 1173
PspPI	GGNCC	1 cut(s)	125
PstI	CTGCAG	1 cut(s)	1278
PsuI	RGATCY	3 cut(s)	370, 424, 1292
PvuII	CAGCTG	2 cut(s)	329, 839
RsaI	GTAC	5 cut(s)	40, 829, 871, 952, 1437
RsaNI	GTAC	5 cut(s)	39, 828, 870, 951, 1436
RseI	CAYNNNNRTG	3 cut(s)	632, 674, 878
SacI	GAGCTC	1 cut(s)	1446
SaqAI	TTAA	4 cut(s)	50, 200, 690, 1287
SatI	GCNGC	4 cut(s)	327, 555, 1274, 1548
Sau3AI	GATC	3 cut(s)	370, 424, 1292
Sau96I	GGNCC	1 cut(s)	125
ScaI	AGTACT	1 cut(s)	952
SchI	GAGTC	1 cut(s)	479
ScrFI	CCNGG	1 cut(s)	1255
SduI	GDGCHC	2 cut(s)	1446, 1454
SfaNI	GCATC	4 cut(s)	18, 596, 976, 1078
SfcI	CTRYAG	2 cut(s)	892, 1274
SmiMI	CAYNNNNRTG	3 cut(s)	632, 674, 878
Sse9I	AATT	9 cut(s)	76, 301, 442, 664, 714, 921, 1099, 1352, 1595
SsiI	CCGC	4 cut(s)	296, 324, 969, 1261
SspI	AATATT	1 cut(s)	1132
SspMI	CTAG	3 cut(s)	84, 354, 429
SstI	GAGCTC	1 cut(s)	1446
StyD4I	CCNGG	1 cut(s)	1253
StyI	CCWWGG	3 cut(s)	83, 218, 1332
TaaI	ACNGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	509
TaqII	GACCGA	1 cut(s)	306
TasI	AATT	9 cut(s)	76, 301, 442, 664, 714, 921, 1099, 1352, 1595
TatI	WGTACW	2 cut(s)	950, 1435
TfiI	GAWTC	4 cut(s)	13, 278, 386, 1535
Tru1I	TTAA	4 cut(s)	50, 200, 690, 1287
Tru9I	TTAA	4 cut(s)	50, 200, 690, 1287
TscAI	CASTG	3 cut(s)	116, 268, 423
TseFI	GTSAC	3 cut(s)	776, 902, 926
TseI	GCWGC	4 cut(s)	326, 554, 1273, 1547
Tsp45I	GTSAC	3 cut(s)	776, 902, 926
TspGWI	ACGGA	1 cut(s)	1511
TspRI	CASTG	3 cut(s)	116, 268, 423
XapI	RAATTY	2 cut(s)	301, 1352
XceI	RCATGY	1 cut(s)	521
XmaJI	CCTAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	1247
XmnI	GAANNNNTTC	2 cut(s)	1479, 1517
XspI	CTAG	3 cut(s)	84, 354, 429
ZrmI	AGTACT	1 cut(s)	952
Zsp2I	ATGCAT	1 cut(s)	1348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.