FvH4_6g14920

phosphatase 2C

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
9247132 .. 9249878
2747 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14920.t1

Sequence Viewer

Length: 1143 bp
ATGATACAGAAAGGTTTGCTTAGAATGATTGTACCCTGTTGGAGGCCATCTCTGGAGGAAGATGGTGCTCGACGGGTTGGCGAAGCCAGTGGACGTGTTGAAGGGTTGATGTGGTACAAGGACTTGGGCAACCATGCTTGGGGGCAATTCTCAATGGCTGTGATCCAAGCCAATAGTACTTTGGAGGATCAAAGCCAGCTCGAGTCCGGGTTTCTGAGTTCAAATAAGTCCGGTCCTCAGGGGACCTTCGTTGGGATTTACGATGGACATGGAGGCCCCGAGGCTTCAAGATTTGTAAACGACAATCTTTTCAGCAATCTGCAGAGATTTGCATCAGAGCATCGAAGCGTATCGGAACATGTTATCCGGAAGGCGTTTTTGGCCACGGAAGAGAACTTCCTCTCTGTTGTGAAGAAGCAGTGGCTAACTAAGCCGCAGATTGCATCTGCAGGAACATGTTGTTTGGTCGGAGTAGTGTGTAATGGACTTTTATACACAGCGAATGTTGGGGACTCGAGGCTGGTTCTAGGGAAACTAGAAAGGGCCACCAGGGAAGTCATAGCTGTTCAATTGTCTACAGAGCACAATGCAAGTATAGAATCAGTGAGACAGGAACTCAAGACTACTCATCCTCATGATCCACAGATTGTGGTGTTGAGACACAAAGTTTGGCGCGTCAAGGGCCTCATACAGGTTTCAAGATCCATTGGTGATGCATATCTAAAGAAGCCAGAGTTCAACAGGGAACCTTTGCTACCCAAGTTTAGGTTACCAGATCCTGAATTCCTCAAACCAATCCTGAGTCCGGATCCGTCGATATCGGTACTCAAACTCCGACCAGAAGATCAATTTCTCATATTTGCTTCTGATGGTCTGTGGGAGCATCTTAGCAACCAGGAGGCTGTCGACATTGTTGGGAATAACCCACGCAGGGGAATTGCCAGGAAACTTATAGAAGCTGCACTACAAGAAGCAGCAAAAAAGAGGGAAGTGAGGTTTGCAGACTTGAAAAAGATAGAGCGAGGAGTGAGACGACATTTTCACGACGACATCAGTGTAGTAGTAGTGTTTCTAGATCACAGTCAGTTGAAAAATGGAACCTCTCCTCGCAGATCTAATATTTCAGTGACACCCAACTTCTAA

Protein Analysis

381

Amino Acids

42.64

Weight (kDa)

9.3

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 62 - 327 1.3e-37 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016879)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g14920
malus_domestica MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica Prupe.6G245000_v2.0.a1
pyrus_communis pycom04g10370 pycom12g12590
rosa_chinensis RchiOBHm_Chr3g0468121
rosa_laevigata RLG00000024447
rosa_multiflora Rmu_sc0003659.1_g000011
rosa_roxburghii Rroxscaffold_6G00413010
rosa_rugosa Rorug03G0093200
rosa_samantha Rh3CG162700 Rh3DG163300
rosa_wichuraiana Rw3G013350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 575, 906
AccII CGCG 1 cut(s) 675
AccIII TCCGGA 2 cut(s) 366, 805
AciI CCGC 1 cut(s) 434
AclWI GGATC 7 cut(s) 157, 195, 632, 696, 770, 803, 816
AcoI YGGCCR 1 cut(s) 381
AcsI RAATTY 1 cut(s) 782
AfaI GTAC 4 cut(s) 33, 116, 178, 825
AfiI CCNNNNNNNGG 8 cut(s) 42, 139, 252, 691, 765, 805, 931, 932
AflIII ACRYGT 3 cut(s) 94, 358, 455
AgsI TTSAA 8 cut(s) 101, 222, 288, 569, 699, 739, 1009, 1090
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 3 cut(s) 548, 894, 941
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AloI GAACNNNNNNTCC 2 cut(s) 348, 380
AluBI AGCT 3 cut(s) 199, 563, 959
AluI AGCT 3 cut(s) 199, 563, 959
Alw21I GWGCWC 2 cut(s) 70, 585
Alw26I GTCTC 3 cut(s) 601, 652, 1024
AlwI GGATC 7 cut(s) 157, 195, 632, 696, 770, 803, 816
AlwNI CAGNNNCTG 1 cut(s) 779
Ama87I CYCGRG 3 cut(s) 200, 278, 514
Aor13HI TCCGGA 2 cut(s) 366, 805
AoxI GGCC 5 cut(s) 44, 274, 381, 543, 682
ApeKI GCWGC 2 cut(s) 959, 974
ApoI RAATTY 1 cut(s) 782
ArsI GACNNNNNNTTYG 2 cut(s) 651, 683
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 5 cut(s) 233, 243, 275, 543, 682
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 722
AvaI CYCGRG 3 cut(s) 200, 278, 514
AvaII GGWCC 2 cut(s) 233, 243
AxyI CCTNAGG 1 cut(s) 237
BalI TGGCCA 1 cut(s) 383
BamHI GGATCC 1 cut(s) 808
BarI GAAGNNNNNNTAC 2 cut(s) 948, 980
Bbv12I GWGCWC 2 cut(s) 70, 585
BbvI GCAGC 2 cut(s) 946, 986
BccI CCATC 4 cut(s) 55, 56, 257, 863
BciT130I CCWGG 3 cut(s) 550, 896, 943
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 3 cut(s) 601, 652, 1024
BfaI CTAG 3 cut(s) 527, 536, 1073
BfmI CTRYAG 3 cut(s) 320, 447, 576
BglII AGATCT 1 cut(s) 1112
BisI GCNGC 3 cut(s) 434, 960, 975
BlsI GCNGC 3 cut(s) 435, 961, 976
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 4 cut(s) 208, 550, 896, 943
Bme18I GGWCC 2 cut(s) 233, 243
BmeT110I CYCGRG 3 cut(s) 200, 278, 514
BmgBI CACGTC 1 cut(s) 95
BmgT120I GGNCC 5 cut(s) 233, 243, 275, 543, 682
BmiI GGNNCC 5 cut(s) 244, 277, 747, 810, 1099
BmrFI CCNGG 4 cut(s) 208, 550, 896, 943
BmsI GCATC 5 cut(s) 341, 349, 452, 703, 892
BplI GAGNNNNNCTC 2 cut(s) 34, 66
BpmI CTGGAG 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 1 cut(s) 208
BsaBI GATNNNNATC 2 cut(s) 331, 717
BsaJI CCNNGG 3 cut(s) 279, 384, 549
BsaWI WCCGGW 3 cut(s) 230, 366, 805
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 8 cut(s) 42, 139, 252, 691, 765, 805, 931, 932
Bse1I ACTGG 1 cut(s) 87
Bse21I CCTNAGG 1 cut(s) 237
Bse8I GATNNNNATC 2 cut(s) 331, 717
BseAI TCCGGA 2 cut(s) 366, 805
BseBI CCWGG 3 cut(s) 550, 896, 943
BseDI CCNNGG 3 cut(s) 279, 384, 549
BseGI GGATG 1 cut(s) 628
BseJI GATNNNNATC 2 cut(s) 331, 717
BseLI CCNNNNNNNGG 8 cut(s) 42, 139, 252, 691, 765, 805, 931, 932
BseMII CTCAG 3 cut(s) 206, 251, 791
BseNI ACTGG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 1038, 1095
BseXI GCAGC 2 cut(s) 946, 986
BsgI GTGCAG 1 cut(s) 945
Bsh1236I CGCG 1 cut(s) 675
BshFI GGCC 5 cut(s) 46, 276, 383, 545, 684
BsiHKAI GWGCWC 2 cut(s) 70, 585
BsiHKCI CYCGRG 3 cut(s) 200, 278, 514
BsiSI CCGG 4 cut(s) 207, 231, 367, 806
BslFI GGGAC 2 cut(s) 256, 524
BslI CCNNNNNNNGG 8 cut(s) 42, 139, 252, 691, 765, 805, 931, 932
BsmAI GTCTC 3 cut(s) 601, 652, 1024
BsmBI CGTCTC 1 cut(s) 1024
BsmFI GGGAC 2 cut(s) 256, 524
BsnI GGCC 5 cut(s) 46, 276, 383, 545, 684
BsoBI CYCGRG 3 cut(s) 200, 278, 514
Bsp1286I GDGCHC 2 cut(s) 70, 585
Bsp13I TCCGGA 2 cut(s) 366, 805
Bsp143I GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
BspACI CCGC 1 cut(s) 434
BspANI GGCC 5 cut(s) 46, 276, 383, 545, 684
BspCNI CTCAG 3 cut(s) 207, 250, 792
BspEI TCCGGA 2 cut(s) 366, 805
BspFNI CGCG 1 cut(s) 675
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 5 cut(s) 244, 277, 747, 810, 1099
BspMAI CTGCAG 2 cut(s) 324, 451
BspPI GGATC 7 cut(s) 157, 195, 632, 696, 770, 803, 816
BsrI ACTGG 1 cut(s) 87
BssECI CCNNGG 3 cut(s) 279, 384, 549
BssMI GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
Bst2UI CCWGG 3 cut(s) 550, 896, 943
Bst4CI ACNGT 1 cut(s) 1082
Bst6I CTCTTC 1 cut(s) 384
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 6 cut(s) 20, 215, 237, 429, 800, 887
BstDSI CCRYGG 1 cut(s) 384
BstEII GGTNACC 1 cut(s) 768
BstENI CCTNNNNNAGG 2 cut(s) 40, 689
BstF5I GGATG 1 cut(s) 628
BstFNI CGCG 1 cut(s) 675
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 9 cut(s) 165, 190, 640, 704, 778, 811, 847, 1078, 1115
BstMAI GTCTC 3 cut(s) 601, 652, 1024
BstMBI GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
BstMWI GCNNNNNNNGC 3 cut(s) 380, 430, 681
BstNI CCWGG 3 cut(s) 550, 896, 943
BstNSI RCATGY 2 cut(s) 362, 459
BstPI GGTNACC 1 cut(s) 768
BstSCI CCNGG 4 cut(s) 206, 548, 894, 941
BstSFI CTRYAG 3 cut(s) 320, 447, 576
BstUI CGCG 1 cut(s) 675
BstV1I GCAGC 2 cut(s) 946, 986
BstX2I RGATCY 4 cut(s) 701, 775, 808, 1112
BstYI RGATCY 4 cut(s) 701, 775, 808, 1112
Bsu36I CCTNAGG 1 cut(s) 237
BsuRI GGCC 5 cut(s) 46, 276, 383, 545, 684
BtgI CCRYGG 1 cut(s) 384
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 628
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 5 cut(s) 94, 425, 609, 1060, 1131
Cac8I GCNNGC 1 cut(s) 197
CaiI CAGNNNCTG 1 cut(s) 779
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 675
Cfr13I GGNCC 5 cut(s) 233, 243, 275, 543, 682
CseI GACGC 1 cut(s) 664
Csp6I GTAC 4 cut(s) 32, 115, 177, 824
CviAII CATG 5 cut(s) 134, 269, 359, 456, 635
CviQI GTAC 4 cut(s) 32, 115, 177, 824
DdeI CTNAG 6 cut(s) 20, 215, 237, 429, 800, 887
DpnI GATC 9 cut(s) 164, 189, 639, 703, 777, 810, 846, 1077, 1114
DpnII GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
EaeI YGGCCR 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Eco32I GATATC 1 cut(s) 819
Eco47I GGWCC 2 cut(s) 233, 243
Eco81I CCTNAGG 1 cut(s) 237
Eco88I CYCGRG 3 cut(s) 200, 278, 514
Eco91I GGTNACC 1 cut(s) 768
EcoNI CCTNNNNNAGG 2 cut(s) 40, 689
EcoO109I RGGNCCY 3 cut(s) 243, 275, 682
EcoO65I GGTNACC 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 782
EcoRII CCWGG 3 cut(s) 548, 894, 941
EcoRV GATATC 1 cut(s) 819
EcoT22I ATGCAT 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 1024
FaeI CATG 5 cut(s) 137, 272, 362, 459, 638
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 256, 524
FatI CATG 5 cut(s) 133, 268, 358, 455, 634
FblI GTMKAC 2 cut(s) 575, 906
Fnu4HI GCNGC 3 cut(s) 434, 960, 975
FokI GGATG 1 cut(s) 615
Fsp4HI GCNGC 3 cut(s) 434, 960, 975
FspBI CTAG 3 cut(s) 527, 536, 1073
GlaI GCGC 1 cut(s) 674
GluI GCNGC 3 cut(s) 434, 960, 975
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 5 cut(s) 46, 276, 383, 545, 684
HapII CCGG 4 cut(s) 207, 231, 367, 806
HgaI GACGC 1 cut(s) 664
HhaI GCGC 1 cut(s) 675
Hin1II CATG 5 cut(s) 137, 272, 362, 459, 638
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 4 cut(s) 203, 512, 599, 802
HpaII CCGG 4 cut(s) 207, 231, 367, 806
HphI GGTGA 1 cut(s) 722
Hpy166II GTNNAC 4 cut(s) 92, 298, 576, 907
Hpy188I TCNGA 6 cut(s) 216, 337, 355, 470, 836, 868
Hpy8I GTNNAC 4 cut(s) 92, 298, 576, 907
Hpy99I CGWCG 3 cut(s) 75, 817, 1049
HpyAV CCTTC 3 cut(s) 95, 256, 364
HpyCH4III ACNGT 1 cut(s) 1082
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 8 cut(s) 322, 332, 443, 449, 590, 716, 962, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 430, 681
HpyF3I CTNAG 6 cut(s) 20, 215, 237, 429, 800, 887
HpySE526I ACGT 1 cut(s) 94
Hsp92II CATG 5 cut(s) 137, 272, 362, 459, 638
HspAI GCGC 1 cut(s) 673
Kpn2I TCCGGA 2 cut(s) 366, 805
Kzo9I GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
LmnI GCTCC 1 cut(s) 880
Lsp1109I GCAGC 2 cut(s) 946, 986
LweI GCATC 5 cut(s) 341, 349, 452, 703, 892
MaeI CTAG 3 cut(s) 527, 536, 1073
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 2 cut(s) 768, 1126
MalI GATC 9 cut(s) 164, 189, 639, 703, 777, 810, 846, 1077, 1114
MboI GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
MboII GAAGA 4 cut(s) 71, 401, 424, 854
MfeI CAATTG 1 cut(s) 569
MflI RGATCY 4 cut(s) 701, 775, 808, 1112
MhlI GDGCHC 2 cut(s) 70, 585
MlsI TGGCCA 1 cut(s) 383
MluCI AATT 5 cut(s) 146, 569, 782, 848, 936
MluNI TGGCCA 1 cut(s) 383
MlyI GAGTC 3 cut(s) 212, 506, 811
MmeI TCCRAC 3 cut(s) 20, 448, 859
Mox20I TGGCCA 1 cut(s) 383
Mph1103I ATGCAT 1 cut(s) 718
MroI TCCGGA 2 cut(s) 366, 805
MscI TGGCCA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 383
MspI CCGG 4 cut(s) 207, 231, 367, 806
MspR9I CCNGG 4 cut(s) 208, 550, 896, 943
MunI CAATTG 1 cut(s) 569
MvaI CCWGG 3 cut(s) 550, 896, 943
MvnI CGCG 1 cut(s) 675
MwoI GCNNNNNNNGC 3 cut(s) 380, 430, 681
NciI CCSGG 1 cut(s) 208
NdeII GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
NlaIII CATG 5 cut(s) 137, 272, 362, 459, 638
NlaIV GGNNCC 5 cut(s) 244, 277, 747, 810, 1099
NmuCI GTSAC 1 cut(s) 1126
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 2 cut(s) 362, 459
PaeR7I CTCGAG 2 cut(s) 200, 514
PagI TCATGA 1 cut(s) 634
PciI ACATGT 2 cut(s) 358, 455
PfeI GAWTC 1 cut(s) 599
PkrI GCNGC 3 cut(s) 435, 961, 976
PleI GAGTC 3 cut(s) 211, 506, 810
PpsI GAGTC 3 cut(s) 211, 506, 810
PpuMI RGGWCCY 1 cut(s) 243
PscI ACATGT 2 cut(s) 358, 455
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 3 cut(s) 548, 894, 941
PspEI GGTNACC 1 cut(s) 768
PspGI CCWGG 3 cut(s) 548, 894, 941
PspN4I GGNNCC 5 cut(s) 244, 277, 747, 810, 1099
PspPI GGNCC 5 cut(s) 233, 243, 275, 543, 682
PspPPI RGGWCCY 1 cut(s) 243
PspXI VCTCGAGB 2 cut(s) 200, 514
PsrI GAACNNNNNNTAC 2 cut(s) 738, 770
PstI CTGCAG 2 cut(s) 324, 451
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 4 cut(s) 701, 775, 808, 1112
RsaI GTAC 4 cut(s) 33, 116, 178, 825
RsaNI GTAC 4 cut(s) 32, 115, 177, 824
RseI CAYNNNNRTG 1 cut(s) 633
SalI GTCGAC 1 cut(s) 905
SatI GCNGC 3 cut(s) 434, 960, 975
Sau3AI GATC 9 cut(s) 162, 187, 637, 701, 775, 808, 844, 1075, 1112
Sau96I GGNCC 5 cut(s) 233, 243, 275, 543, 682
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 3 cut(s) 212, 506, 811
ScrFI CCNGG 4 cut(s) 208, 550, 896, 943
SduI GDGCHC 2 cut(s) 70, 585
SfaNI GCATC 5 cut(s) 341, 349, 452, 703, 892
SfcI CTRYAG 3 cut(s) 320, 447, 576
Sfr274I CTCGAG 2 cut(s) 200, 514
SinI GGWCC 2 cut(s) 233, 243
SlaI CTCGAG 2 cut(s) 200, 514
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 3 cut(s) 200, 514, 617
SmoI CTYRAG 3 cut(s) 200, 514, 617
Sse9I AATT 5 cut(s) 146, 569, 782, 848, 936
SsiI CCGC 1 cut(s) 434
SspI AATATT 1 cut(s) 1120
SspMI CTAG 3 cut(s) 527, 536, 1073
StyD4I CCNGG 4 cut(s) 206, 548, 894, 941
TaaI ACNGT 1 cut(s) 1082
TaiI ACGT 1 cut(s) 97
TaqI TCGA 6 cut(s) 70, 201, 343, 515, 815, 906
TasI AATT 5 cut(s) 146, 569, 782, 848, 936
TatI WGTACW 1 cut(s) 176
TauI GCSGC 1 cut(s) 436
TfiI GAWTC 1 cut(s) 599
TscAI CASTG 5 cut(s) 94, 425, 609, 1060, 1131
TseFI GTSAC 1 cut(s) 1126
TseI GCWGC 2 cut(s) 959, 974
Tsp45I GTSAC 1 cut(s) 1126
TspGWI ACGGA 2 cut(s) 401, 801
TspRI CASTG 5 cut(s) 94, 425, 609, 1060, 1131
VpaK11BI GGWCC 2 cut(s) 233, 243
XagI CCTNNNNNAGG 2 cut(s) 40, 689
XapI RAATTY 1 cut(s) 782
XbaI TCTAGA 1 cut(s) 1072
XceI RCATGY 2 cut(s) 362, 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XhoI CTCGAG 2 cut(s) 200, 514
XmiI GTMKAC 2 cut(s) 575, 906
XspI CTAG 3 cut(s) 527, 536, 1073
ZrmI AGTACT 1 cut(s) 178
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.