Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016879

Physical Location & Seq

Genomic Coordinates Reverse (-)

24236224 .. 24240454

Gene Structure 4231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G245000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGTCCTGTTGGAAACCCTCTGCAGTTGATGATGGACCTCGGCGTTGTGGCGGTGAAGCCAGTGGACGTGTTGATGGGTTGTTGTGGTACAAGGACTTGGGGCAGCATGCTTGGGGAGAATTTTCAATGGCTGTCATTCAAGCCAATTCCGTTTTGGAGGATCAAAGCCAAATTGAATCCGGTCCCTTGAGTTCAACAAAATCTGGTCCTGTGGGGACCTTTGTTGGTGTCTATGATGGGCATGGAGGGCCTGAGGCTTCAACATATGTCAATGAAAATCTCTTCTGCAATCTTCAGAGAATTGCAGCTGAGCATAGGGCCATATCAGAACATGTTATCAAGAAGGCTTACTTGGCCACAGAGGAGAATTTTCTCTCCATGGTGAAGAAAAAGTGGTTAAACAAGCCACAGATTGCATCTGCAGGAACATGTTGTTTGGTTGGGATACTTTGCAATGGACTGCTTTACACAGCAAATGTTGGGGACTCTCGGGTGGTTTTAGGAAAAATAGAAAAGGCGACGAAAGAGGTTATAGCCATTCAATTATCTACAGAGCACAATGCAAGTATAGAATCTGTGAGAGATGAGGTCAAGTCAATGCATCCATATGATCCAAATATTGTGGTTTTGAGGCACAGAGTTTGGCGTGTGAAGGGCCTCATACAGGTTACAAGATCCCTTGGTGATGCATATTTAAAGAACGCAGAGTTCAACAGAGAGCCTCTACCCCTAAAGTTTAGGCTGCCTGAACCTTTCCTCAAGCCAATTCTCATCCCCGAACCGTCCATATCGGTGCTTAAACTCTGCCCTGAAGATCAGTTTCTCATATTTGCTTCTGATGGTCTGTGGGAGCATCTCAGCAACCAGGAGGCTGTGGACATTGTCAATAGTTACCCACGTAAAGGAATAGCGAGGAAGCTTGTTGAAGCTGCACTTCAGGAAGCAGCCAAGAAGAGAGAAGTGAGGTACTCGGACTTGAGAAAGATTGAAAGAGGAGTGAGAAGACATTTTCATGACGACATCAGTGTTGTGGTGGTGTTTCTAAGCACAAGATTGAAAGGTGGAGCCATCCCACGCAAACCTCAATTTTCATTAAAACCCGACATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042578 GO:0043900 GO:0043901 GO:0044237 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0080134 GO:1900055 GO:1900056 GO:1900424 GO:1900425 GO:1905622 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

371

Amino Acids

41.19

Weight (kDa)

8.83

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14920
malus_domestica	MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica	Prupe.6G245000_v2.0.a1
pyrus_communis	pycom04g10370 pycom12g12590
rosa_chinensis	RchiOBHm_Chr3g0468121
rosa_laevigata	RLG00000024447
rosa_multiflora	Rmu_sc0003659.1_g000011
rosa_roxburghii	Rroxscaffold_6G00413010
rosa_rugosa	Rorug03G0093200
rosa_samantha	Rh3CG162700 Rh3DG163300
rosa_wichuraiana	Rw3G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	3 cut(s)	171, 608, 672
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	122, 370
AcuI	CTGAAG	3 cut(s)	281, 834, 923
AfaI	GTAC	2 cut(s)	92, 971
AfiI	CCNNNNNNNGG	2 cut(s)	667, 905
AflIII	ACRYGT	3 cut(s)	70, 334, 431
AjiI	CACGTC	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	867
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	3 cut(s)	311, 922, 932
AluI	AGCT	3 cut(s)	311, 922, 932
Alw21I	GWGCWC	1 cut(s)	561
AlwI	GGATC	3 cut(s)	171, 608, 672
Ama87I	CYCGRG	1 cut(s)	492
AoxI	GGCC	4 cut(s)	251, 321, 357, 658
ApeKI	GCWGC	5 cut(s)	106, 308, 745, 932, 947
ApoI	RAATTY	2 cut(s)	122, 370
AspS9I	GGNCC	7 cut(s)	38, 185, 209, 219, 251, 321, 658
AsuHPI	GGTGA	3 cut(s)	68, 397, 698
AvaI	CYCGRG	1 cut(s)	492
AvaII	GGWCC	4 cut(s)	38, 185, 209, 219
AxyI	CCTNAGG	1 cut(s)	255
BalI	TGGCCA	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	1012
Bbv12I	GWGCWC	1 cut(s)	561
BbvI	GCAGC	5 cut(s)	118, 320, 732, 919, 959
BccI	CCATC	5 cut(s)	29, 71, 233, 836, 1079
BciT130I	CCWGG	1 cut(s)	869
BciVI	GTATCC	1 cut(s)	441
BfaI	CTAG	1 cut(s)	1111
BfmI	CTRYAG	3 cut(s)	24, 423, 552
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	5 cut(s)	107, 309, 746, 933, 948
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	5 cut(s)	108, 310, 747, 934, 949
Bme1390I	CCNGG	1 cut(s)	869
Bme18I	GGWCC	4 cut(s)	38, 185, 209, 219
BmeT110I	CYCGRG	1 cut(s)	492
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	7 cut(s)	38, 185, 209, 219, 251, 321, 658
BmiI	GGNNCC	3 cut(s)	187, 220, 1069
BmrFI	CCNGG	1 cut(s)	869
BmsI	GCATC	4 cut(s)	428, 613, 679, 865
BpiI	GAAGAC	1 cut(s)	1012
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	3 cut(s)	211, 746, 1000
BsaAI	YACGTR	1 cut(s)	902
BsaJI	CCNNGG	3 cut(s)	41, 381, 682
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	667, 905
Bse1I	ACTGG	1 cut(s)	63
Bse21I	CCTNAGG	1 cut(s)	255
Bse3DI	GCAATG	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	869
BseDI	CCNNGG	3 cut(s)	41, 381, 682
BseGI	GGATG	3 cut(s)	604, 774, 1071
BseLI	CCNNNNNNNGG	2 cut(s)	667, 905
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	3 cut(s)	246, 303, 874
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	2 cut(s)	380, 1011
BseXI	GCAGC	5 cut(s)	118, 320, 732, 919, 959
BsgI	GTGCAG	1 cut(s)	918
BshFI	GGCC	4 cut(s)	253, 323, 359, 660
BsiHKAI	GWGCWC	1 cut(s)	561
BsiHKCI	CYCGRG	1 cut(s)	492
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	3 cut(s)	171, 232, 500
BslI	CCNNNNNNNGG	2 cut(s)	667, 905
BsmFI	GGGAC	3 cut(s)	171, 232, 500
BsnI	GGCC	4 cut(s)	253, 323, 359, 660
BsoBI	CYCGRG	1 cut(s)	492
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	4 cut(s)	163, 613, 677, 817
Bsp1720I	GCTNAGC	1 cut(s)	312
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	4 cut(s)	253, 323, 359, 660
BspCNI	CTCAG	3 cut(s)	247, 304, 873
BspHI	TCATGA	1 cut(s)	1015
BspLI	GGNNCC	3 cut(s)	187, 220, 1069
BspMAI	CTGCAG	2 cut(s)	28, 427
BspPI	GGATC	3 cut(s)	171, 608, 672
BsrDI	GCAATG	1 cut(s)	463
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	41, 381, 682
BssMI	GATC	4 cut(s)	163, 613, 677, 817
BssT1I	CCWWGG	2 cut(s)	381, 682
Bst2UI	CCWGG	1 cut(s)	869
Bst4CI	ACNGT	1 cut(s)	786
Bst6I	CTCTTC	2 cut(s)	290, 950
BstBAI	YACGTR	1 cut(s)	902
BstC8I	GCNNGC	1 cut(s)	111
BstDEI	CTNAG	4 cut(s)	255, 312, 860, 1046
BstDSI	CCRYGG	1 cut(s)	381
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	3 cut(s)	604, 774, 1071
BstKTI	GATC	4 cut(s)	166, 616, 680, 820
BstMBI	GATC	4 cut(s)	163, 613, 677, 817
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 356
BstNI	CCWGG	1 cut(s)	869
BstNSI	RCATGY	3 cut(s)	113, 338, 435
BstSCI	CCNGG	1 cut(s)	867
BstSFI	CTRYAG	3 cut(s)	24, 423, 552
BstV1I	GCAGC	5 cut(s)	118, 320, 732, 919, 959
BstV2I	GAAGAC	1 cut(s)	1012
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
Bsu36I	CCTNAGG	1 cut(s)	255
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	4 cut(s)	253, 323, 359, 660
BtgI	CCRYGG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	604, 774, 1071
BtsIMutI	CAGTG	2 cut(s)	70, 1033
Cac8I	GCNNGC	1 cut(s)	111
CciI	TCATGA	1 cut(s)	1015
Cfr13I	GGNCC	7 cut(s)	38, 185, 209, 219, 251, 321, 658
Csp6I	GTAC	2 cut(s)	91, 970
CspCI	CAANNNNNGTGG	2 cut(s)	606, 641
CviAII	CATG	6 cut(s)	110, 245, 335, 382, 432, 1016
CviQI	GTAC	2 cut(s)	91, 970
DdeI	CTNAG	4 cut(s)	255, 312, 860, 1046
DpnI	GATC	4 cut(s)	165, 615, 679, 819
DpnII	GATC	4 cut(s)	163, 613, 677, 817
DraI	TTTAAA	1 cut(s)	699
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	290, 950
EarI	CTCTTC	2 cut(s)	290, 950
Eco130I	CCWWGG	2 cut(s)	381, 682
Eco47I	GGWCC	4 cut(s)	38, 185, 209, 219
Eco57I	CTGAAG	3 cut(s)	281, 834, 923
Eco81I	CCTNAGG	1 cut(s)	255
Eco88I	CYCGRG	1 cut(s)	492
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	3 cut(s)	219, 251, 658
EcoRII	CCWGG	1 cut(s)	867
EcoT14I	CCWWGG	2 cut(s)	381, 682
EcoT22I	ATGCAT	2 cut(s)	606, 694
ErhI	CCWWGG	2 cut(s)	381, 682
FaeI	CATG	6 cut(s)	113, 248, 338, 385, 435, 1019
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 921, 953
FaqI	GGGAC	3 cut(s)	171, 232, 500
FatI	CATG	6 cut(s)	109, 244, 334, 381, 431, 1015
FauNDI	CATATG	2 cut(s)	268, 610
Fnu4HI	GCNGC	5 cut(s)	107, 309, 746, 933, 948
FokI	GGATG	3 cut(s)	591, 761, 1058
Fsp4HI	GCNGC	5 cut(s)	107, 309, 746, 933, 948
FspBI	CTAG	1 cut(s)	1111
GluI	GCNGC	5 cut(s)	107, 309, 746, 933, 948
HaeIII	GGCC	4 cut(s)	253, 323, 359, 660
HapII	CCGG	1 cut(s)	183
Hin1II	CATG	6 cut(s)	113, 248, 338, 385, 435, 1019
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	3 cut(s)	179, 488, 575
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	3 cut(s)	68, 397, 698
Hpy166II	GTNNAC	2 cut(s)	68, 880
Hpy188I	TCNGA	4 cut(s)	300, 331, 841, 976
Hpy188III	TCNNGA	3 cut(s)	343, 941, 1016
Hpy8I	GTNNAC	2 cut(s)	68, 880
Hpy99I	CGWCG	1 cut(s)	526
HpyAV	CCTTC	2 cut(s)	340, 649
HpyCH4III	ACNGT	1 cut(s)	786
HpyCH4IV	ACGT	2 cut(s)	70, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 356
HpyF3I	CTNAG	4 cut(s)	255, 312, 860, 1046
HpySE526I	ACGT	2 cut(s)	70, 901
Hsp92II	CATG	6 cut(s)	113, 248, 338, 385, 435, 1019
Kzo9I	GATC	4 cut(s)	163, 613, 677, 817
LmnI	GCTCC	2 cut(s)	853, 1067
Lsp1109I	GCAGC	5 cut(s)	118, 320, 732, 919, 959
LweI	GCATC	4 cut(s)	428, 613, 679, 865
MaeI	CTAG	1 cut(s)	1111
MaeII	ACGT	2 cut(s)	70, 901
MaeIII	GTNAC	2 cut(s)	670, 893
MalI	GATC	4 cut(s)	165, 615, 679, 819
MboI	GATC	4 cut(s)	163, 613, 677, 817
MboII	GAAGA	6 cut(s)	277, 287, 400, 827, 967, 1017
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	8 cut(s)	122, 148, 174, 303, 370, 545, 768, 1088
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	482
Mox20I	TGGCCA	1 cut(s)	359
Mph1103I	ATGCAT	2 cut(s)	606, 694
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	4 cut(s)	401, 698, 801, 1097
MslI	CAYNNNNRTG	3 cut(s)	609, 794, 1014
Msp20I	TGGCCA	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	311
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	1 cut(s)	869
MvaI	CCWGG	1 cut(s)	869
MwoI	GCNNNNNNNGC	2 cut(s)	250, 356
NcoI	CCATGG	1 cut(s)	381
NdeI	CATATG	2 cut(s)	268, 610
NdeII	GATC	4 cut(s)	163, 613, 677, 817
NlaIII	CATG	6 cut(s)	113, 248, 338, 385, 435, 1019
NlaIV	GGNNCC	3 cut(s)	187, 220, 1069
NmeAIII	GCCGAG	1 cut(s)	22
NsiI	ATGCAT	2 cut(s)	606, 694
NspI	RCATGY	3 cut(s)	113, 338, 435
PaeI	GCATGC	1 cut(s)	113
PagI	TCATGA	1 cut(s)	1015
PciI	ACATGT	2 cut(s)	334, 431
PfeI	GAWTC	2 cut(s)	179, 575
PflFI	GACNNNGTC	1 cut(s)	884
PkrI	GCNGC	5 cut(s)	108, 310, 747, 934, 949
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	902
PpuMI	RGGWCCY	1 cut(s)	219
PscI	ACATGT	2 cut(s)	334, 431
Psp5II	RGGWCCY	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	867
PspGI	CCWGG	1 cut(s)	867
PspN4I	GGNNCC	3 cut(s)	187, 220, 1069
PspPI	GGNCC	7 cut(s)	38, 185, 209, 219, 251, 321, 658
PspPPI	RGGWCCY	1 cut(s)	219
PstI	CTGCAG	2 cut(s)	28, 427
PsuI	RGATCY	1 cut(s)	677
PsyI	GACNNNGTC	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	2 cut(s)	92, 971
RsaNI	GTAC	2 cut(s)	91, 970
RseI	CAYNNNNRTG	3 cut(s)	609, 794, 1014
SaqAI	TTAA	4 cut(s)	401, 698, 801, 1097
SatI	GCNGC	5 cut(s)	107, 309, 746, 933, 948
Sau3AI	GATC	4 cut(s)	163, 613, 677, 817
Sau96I	GGNCC	7 cut(s)	38, 185, 209, 219, 251, 321, 658
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	1 cut(s)	869
SduI	GDGCHC	1 cut(s)	561
SfaNI	GCATC	4 cut(s)	428, 613, 679, 865
SfcI	CTRYAG	3 cut(s)	24, 423, 552
SinI	GGWCC	4 cut(s)	38, 185, 209, 219
SmiMI	CAYNNNNRTG	3 cut(s)	609, 794, 1014
SmlI	CTYRAG	3 cut(s)	190, 761, 979
SmoI	CTYRAG	3 cut(s)	190, 761, 979
SphI	GCATGC	1 cut(s)	113
Sse9I	AATT	8 cut(s)	122, 148, 174, 303, 370, 545, 768, 1088
SsiI	CCGC	1 cut(s)	54
SspI	AATATT	1 cut(s)	622
SspMI	CTAG	1 cut(s)	1111
StyD4I	CCNGG	1 cut(s)	867
StyI	CCWWGG	2 cut(s)	381, 682
TaaI	ACNGT	1 cut(s)	786
TaiI	ACGT	2 cut(s)	73, 904
TasI	AATT	8 cut(s)	122, 148, 174, 303, 370, 545, 768, 1088
TfiI	GAWTC	2 cut(s)	179, 575
Tru1I	TTAA	4 cut(s)	401, 698, 801, 1097
Tru9I	TTAA	4 cut(s)	401, 698, 801, 1097
TscAI	CASTG	2 cut(s)	70, 1033
TseI	GCWGC	5 cut(s)	106, 308, 745, 932, 947
TspDTI	ATGAA	3 cut(s)	291, 1004, 1083
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	70, 1033
Tth111I	GACNNNGTC	1 cut(s)	884
VpaK11BI	GGWCC	4 cut(s)	38, 185, 209, 219
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	2 cut(s)	122, 370
XceI	RCATGY	3 cut(s)	113, 338, 435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XspI	CTAG	1 cut(s)	1111
Zsp2I	ATGCAT	2 cut(s)	606, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.