Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003659.1

Orthogroup ID

OG0016879

Physical Location & Seq

Genomic Coordinates Reverse (-)

27574 .. 29384

Gene Structure 1811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003659.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

atggttaaaccctgttggaggccatctgtagaggaagatggtgctcgacggggtggtgaagctagcggacgtgttgaagggttgttgtggtacaaggacctgggctaccatgcttgggggcaattttcaatggctgtgatccaagccaatagtactttggaggatcaaagccagctcgaatccgggtttctgagtgcaaacagattcggtcctcaggggaccttcgttggagtttacgatggacatggaggccccgaggcttcaagatatgtaaacgacaatcttttcaggaatctccagagaattgcatcagagcatcgaagcatatcggaaaatgttattcgaaaggcgtttttggccacggaagaaaacttcctctcctttgtgaggaagcaatggctaagtaagccagagattgcttctgcaggaacatgttgtttggtgggagtagtgtgtaatggacttctatacacggcaaatgttggggactcaaggctggttctagggaaagtagaaagggccactagggaagtcatagctattcagttgtcttcagagcacaatgcaagtatggaatcagtaagacacgaacttaagactactcatccccatgatccacagattgtggtgttgagacacaaagtttggcgcgtcaaaggcctcatacaggtttcaagatccattggtgatgcatatctaaagaatgcagagttcaacagagaacctctactacccaagtttaggttaccagattctgaacctttcgtcaagccaattctaagtccagatccatcaatatcggtactcaaactccgaccagaagatcagtttctcatatttgctactgatggtctgtgggagcatcttagcaaccaggaggctgtcgacattgtcaacaataacccacgtaaaggaattgccaggaagcttattgaagttgcactacaagcagcagcaaagaaaagggaagtgaggtactcagacttgaaaagaatcgagcgaggagtgagacgacattttcacgacgacatcagtgtagtggtagtgtttctagatcacaatcagttgaaaaatggaacctctcgcaaatctaatatttcaataacacccaacttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042578 GO:0043900 GO:0043901 GO:0044237 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0080134 GO:1900055 GO:1900056 GO:1900424 GO:1900425 GO:1905622 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

372

Amino Acids

41.88

Weight (kDa)

9.18

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016879)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g14920
malus_domestica	MD04G1111100.v1.1 MD12G1129700.v1.1
prunus_persica	Prupe.6G245000_v2.0.a1
pyrus_communis	pycom04g10370 pycom12g12590
rosa_chinensis	RchiOBHm_Chr3g0468121
rosa_laevigata	RLG00000024447
rosa_multiflora	Rmu_sc0003659.1_g000011
rosa_roxburghii	Rroxscaffold_6G00413010
rosa_rugosa	Rorug03G0093200
rosa_samantha	Rh3CG162700 Rh3DG163300
rosa_wichuraiana	Rw3G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	885
AccII	CGCG	1 cut(s)	651
AciI	CCGC	1 cut(s)	66
AclWI	GGATC	5 cut(s)	133, 171, 608, 672, 782
AcoI	YGGCCR	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	537
AfaI	GTAC	4 cut(s)	92, 154, 804, 977
AfiI	CCNNNNNNNGG	6 cut(s)	18, 115, 387, 667, 741, 911
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	2 cut(s)	70, 431
AgsI	TTSAA	9 cut(s)	77, 129, 264, 675, 715, 935, 988, 1069, 1101
AjiI	CACGTC	1 cut(s)	71
AjnI	CCWGG	3 cut(s)	99, 873, 920
AluBI	AGCT	4 cut(s)	62, 175, 539, 928
AluI	AGCT	4 cut(s)	62, 175, 539, 928
Alw21I	GWGCWC	2 cut(s)	46, 561
Alw26I	GTCTC	2 cut(s)	628, 1003
AlwI	GGATC	5 cut(s)	133, 171, 608, 672, 782
AlwNI	CAGNNNCTG	1 cut(s)	755
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	5 cut(s)	20, 250, 357, 519, 658
ApeKI	GCWGC	2 cut(s)	950, 953
ArsI	GACNNNNNNTTYG	2 cut(s)	627, 659
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	5 cut(s)	97, 209, 219, 251, 519
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	2 cut(s)	68, 698
AsuII	TTCGAA	1 cut(s)	343
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	3 cut(s)	97, 209, 219
AxyI	CCTNAGG	1 cut(s)	213
BalI	TGGCCA	1 cut(s)	359
BarI	GAAGNNNNNNTAC	2 cut(s)	927, 959
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	46, 561
BbvI	GCAGC	2 cut(s)	962, 965
BccI	CCATC	5 cut(s)	31, 32, 233, 799, 842
BceAI	ACGGC	1 cut(s)	489
BciT130I	CCWGG	3 cut(s)	101, 875, 922
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	628, 1003
BfaI	CTAG	5 cut(s)	63, 503, 525, 1052, 1117
BfmI	CTRYAG	2 cut(s)	27, 423
BfrI	CTTAAG	1 cut(s)	593
BisI	GCNGC	2 cut(s)	951, 954
BlsI	GCNGC	2 cut(s)	952, 955
BmcAI	AGTACT	1 cut(s)	154
Bme1390I	CCNGG	4 cut(s)	101, 184, 875, 922
Bme18I	GGWCC	3 cut(s)	97, 209, 219
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	71
BmgT120I	GGNCC	5 cut(s)	97, 209, 219, 251, 519
BmiI	GGNNCC	3 cut(s)	220, 253, 1078
BmrFI	CCNGG	4 cut(s)	101, 184, 875, 922
BmsI	GCATC	4 cut(s)	317, 325, 679, 871
BmtI	GCTAGC	1 cut(s)	66
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	343
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	908
BsaBI	GATNNNNATC	2 cut(s)	693, 1059
BsaJI	CCNNGG	3 cut(s)	100, 255, 360
BsaXI	ACNNNNNCTCC	4 cut(s)	362, 392, 795, 825
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 115, 387, 667, 741, 911
Bse21I	CCTNAGG	1 cut(s)	213
Bse3DI	GCAATG	1 cut(s)	401
Bse8I	GATNNNNATC	2 cut(s)	693, 1059
BseBI	CCWGG	3 cut(s)	101, 875, 922
BseDI	CCNNGG	3 cut(s)	100, 255, 360
BseGI	GGATG	1 cut(s)	604
BseJI	GATNNNNATC	2 cut(s)	693, 1059
BseLI	CCNNNNNNNGG	6 cut(s)	18, 115, 387, 667, 741, 911
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	3 cut(s)	182, 227, 993
BseRI	GAGGAG	1 cut(s)	1017
BseXI	GCAGC	2 cut(s)	962, 965
Bsh1236I	CGCG	1 cut(s)	651
BshFI	GGCC	5 cut(s)	22, 252, 359, 521, 660
BsiHKAI	GWGCWC	2 cut(s)	46, 561
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	183
BslFI	GGGAC	2 cut(s)	232, 500
BslI	CCNNNNNNNGG	6 cut(s)	18, 115, 387, 667, 741, 911
BsmAI	GTCTC	2 cut(s)	628, 1003
BsmBI	CGTCTC	1 cut(s)	1003
BsmFI	GGGAC	2 cut(s)	232, 500
BsmI	GAATGC	1 cut(s)	709
BsnI	GGCC	5 cut(s)	22, 252, 359, 521, 660
BsoBI	CYCGRG	1 cut(s)	254
Bsp119I	TTCGAA	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	46, 561
Bsp143I	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
BspACI	CCGC	1 cut(s)	66
BspANI	GGCC	5 cut(s)	22, 252, 359, 521, 660
BspCNI	CTCAG	3 cut(s)	183, 226, 992
BspFNI	CGCG	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	220, 253, 1078
BspMAI	CTGCAG	1 cut(s)	427
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	5 cut(s)	133, 171, 608, 672, 782
BspT104I	TTCGAA	1 cut(s)	343
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	100, 255, 360
BssMI	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
Bst2UI	CCWGG	3 cut(s)	101, 875, 922
BstAFI	CTTAAG	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	64, 173
BstDEI	CTNAG	6 cut(s)	191, 213, 401, 779, 866, 979
BstDSI	CCRYGG	1 cut(s)	360
BstEII	GGTNACC	1 cut(s)	744
BstENI	CCTNNNNNAGG	3 cut(s)	16, 385, 665
BstF5I	GGATG	1 cut(s)	604
BstFNI	CGCG	1 cut(s)	651
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	7 cut(s)	141, 166, 616, 680, 790, 826, 1057
BstMAI	GTCTC	2 cut(s)	628, 1003
BstMBI	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	356, 406, 657, 947
BstNI	CCWGG	3 cut(s)	101, 875, 922
BstNSI	RCATGY	1 cut(s)	435
BstPI	GGTNACC	1 cut(s)	744
BstSCI	CCNGG	4 cut(s)	99, 182, 873, 920
BstSFI	CTRYAG	2 cut(s)	27, 423
BstUI	CGCG	1 cut(s)	651
BstV1I	GCAGC	2 cut(s)	962, 965
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	2 cut(s)	677, 787
BstYI	RGATCY	2 cut(s)	677, 787
Bsu36I	CCTNAGG	1 cut(s)	213
BsuRI	GGCC	5 cut(s)	22, 252, 359, 521, 660
BtgI	CCRYGG	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	604
BtsIMutI	CAGTG	1 cut(s)	1039
Cac8I	GCNNGC	2 cut(s)	64, 173
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	5 cut(s)	97, 209, 219, 251, 519
CseI	GACGC	1 cut(s)	640
Csp6I	GTAC	4 cut(s)	91, 153, 803, 976
CviAII	CATG	4 cut(s)	110, 245, 432, 611
CviQI	GTAC	4 cut(s)	91, 153, 803, 976
DdeI	CTNAG	6 cut(s)	191, 213, 401, 779, 866, 979
DpnI	GATC	7 cut(s)	140, 165, 615, 679, 789, 825, 1056
DpnII	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
EaeI	YGGCCR	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	660
Eco47I	GGWCC	3 cut(s)	97, 209, 219
Eco57I	CTGAAG	1 cut(s)	537
Eco81I	CCTNAGG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	254
Eco91I	GGTNACC	1 cut(s)	744
EcoNI	CCTNNNNNAGG	3 cut(s)	16, 385, 665
EcoO109I	RGGNCCY	3 cut(s)	97, 219, 251
EcoO65I	GGTNACC	1 cut(s)	744
EcoRII	CCWGG	3 cut(s)	99, 873, 920
EcoT22I	ATGCAT	1 cut(s)	694
Esp3I	CGTCTC	1 cut(s)	1003
FaeI	CATG	4 cut(s)	113, 248, 435, 614
FaqI	GGGAC	2 cut(s)	232, 500
FatI	CATG	4 cut(s)	109, 244, 431, 610
FblI	GTMKAC	1 cut(s)	885
Fnu4HI	GCNGC	2 cut(s)	951, 954
FokI	GGATG	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	951, 954
FspBI	CTAG	5 cut(s)	63, 503, 525, 1052, 1117
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	2 cut(s)	951, 954
GsuI	CTGGAG	1 cut(s)	281
HaeIII	GGCC	5 cut(s)	22, 252, 359, 521, 660
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	1 cut(s)	651
Hin1II	CATG	4 cut(s)	113, 248, 435, 614
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HincII	GTYRAC	2 cut(s)	886, 895
HindII	GTYRAC	2 cut(s)	886, 895
HindIII	AAGCTT	1 cut(s)	926
HinfI	GANTC	7 cut(s)	179, 204, 292, 488, 575, 752, 993
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	2 cut(s)	68, 698
Hpy166II	GTNNAC	4 cut(s)	235, 274, 886, 895
Hpy188I	TCNGA	7 cut(s)	192, 313, 331, 556, 757, 815, 982
Hpy188III	TCNNGA	7 cut(s)	264, 289, 298, 675, 785, 1022, 1052
Hpy8I	GTNNAC	4 cut(s)	235, 274, 886, 895
Hpy99I	CGWCG	2 cut(s)	51, 1028
HpyAV	CCTTC	2 cut(s)	71, 232
HpyCH4IV	ACGT	2 cut(s)	70, 907
HpyCH4V	TGCA	7 cut(s)	197, 308, 425, 566, 692, 707, 941
HpyF10VI	GCNNNNNNNGC	4 cut(s)	356, 406, 657, 947
HpyF3I	CTNAG	6 cut(s)	191, 213, 401, 779, 866, 979
HpySE526I	ACGT	2 cut(s)	70, 907
Hsp92II	CATG	4 cut(s)	113, 248, 435, 614
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
LmnI	GCTCC	1 cut(s)	859
Lsp1109I	GCAGC	2 cut(s)	962, 965
LweI	GCATC	4 cut(s)	317, 325, 679, 871
MaeI	CTAG	5 cut(s)	63, 503, 525, 1052, 1117
MaeII	ACGT	2 cut(s)	70, 907
MaeIII	GTNAC	1 cut(s)	744
MalI	GATC	7 cut(s)	140, 165, 615, 679, 789, 825, 1056
MboI	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
MboII	GAAGA	4 cut(s)	47, 377, 543, 833
MflI	RGATCY	2 cut(s)	677, 787
MhlI	GDGCHC	2 cut(s)	46, 561
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	4 cut(s)	122, 303, 774, 915
MluNI	TGGCCA	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	482
MmeI	TCCRAC	2 cut(s)	208, 838
Mox20I	TGGCCA	1 cut(s)	359
Mph1103I	ATGCAT	1 cut(s)	694
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	2 cut(s)	6, 594
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	359
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	4 cut(s)	101, 184, 875, 922
Mva1269I	GAATGC	1 cut(s)	709
MvaI	CCWGG	3 cut(s)	101, 875, 922
MvnI	CGCG	1 cut(s)	651
MwoI	GCNNNNNNNGC	4 cut(s)	356, 406, 657, 947
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	113, 248, 435, 614
NlaIV	GGNNCC	3 cut(s)	220, 253, 1078
NsiI	ATGCAT	1 cut(s)	694
NspI	RCATGY	1 cut(s)	435
NspV	TTCGAA	1 cut(s)	343
PceI	AGGCCT	1 cut(s)	660
PciI	ACATGT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	709
PfeI	GAWTC	6 cut(s)	179, 204, 292, 575, 752, 993
PflFI	GACNNNGTC	1 cut(s)	890
PkrI	GCNGC	2 cut(s)	952, 955
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
Ppu21I	YACGTR	1 cut(s)	908
PpuMI	RGGWCCY	2 cut(s)	97, 219
PscI	ACATGT	1 cut(s)	431
Psp5II	RGGWCCY	2 cut(s)	97, 219
Psp6I	CCWGG	3 cut(s)	99, 873, 920
PspEI	GGTNACC	1 cut(s)	744
PspGI	CCWGG	3 cut(s)	99, 873, 920
PspN4I	GGNNCC	3 cut(s)	220, 253, 1078
PspPI	GGNCC	5 cut(s)	97, 209, 219, 251, 519
PspPPI	RGGWCCY	2 cut(s)	97, 219
PsrI	GAACNNNNNNTAC	2 cut(s)	714, 746
PstI	CTGCAG	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	677, 787
PsyI	GACNNNGTC	1 cut(s)	890
RsaI	GTAC	4 cut(s)	92, 154, 804, 977
RsaNI	GTAC	4 cut(s)	91, 153, 803, 976
RseI	CAYNNNNRTG	1 cut(s)	609
SalI	GTCGAC	1 cut(s)	884
SaqAI	TTAA	2 cut(s)	6, 594
SatI	GCNGC	2 cut(s)	951, 954
Sau3AI	GATC	7 cut(s)	138, 163, 613, 677, 787, 823, 1054
Sau96I	GGNCC	5 cut(s)	97, 209, 219, 251, 519
ScaI	AGTACT	1 cut(s)	154
SchI	GAGTC	1 cut(s)	482
ScrFI	CCNGG	4 cut(s)	101, 184, 875, 922
SduI	GDGCHC	2 cut(s)	46, 561
SfaNI	GCATC	4 cut(s)	317, 325, 679, 871
SfcI	CTRYAG	2 cut(s)	27, 423
SfuI	TTCGAA	1 cut(s)	343
SinI	GGWCC	3 cut(s)	97, 209, 219
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	490, 593
SmoI	CTYRAG	2 cut(s)	490, 593
Sse9I	AATT	4 cut(s)	122, 303, 774, 915
SseBI	AGGCCT	1 cut(s)	660
SsiI	CCGC	1 cut(s)	66
SspI	AATATT	1 cut(s)	1096
SspMI	CTAG	5 cut(s)	63, 503, 525, 1052, 1117
StuI	AGGCCT	1 cut(s)	660
StyD4I	CCNGG	4 cut(s)	99, 182, 873, 920
TaiI	ACGT	2 cut(s)	73, 910
TaqI	TCGA	6 cut(s)	46, 177, 319, 343, 885, 996
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	4 cut(s)	122, 303, 774, 915
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	6 cut(s)	179, 204, 292, 575, 752, 993
Tru1I	TTAA	2 cut(s)	6, 594
Tru9I	TTAA	2 cut(s)	6, 594
TscAI	CASTG	1 cut(s)	1039
TseI	GCWGC	2 cut(s)	950, 953
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	1039
Tth111I	GACNNNGTC	1 cut(s)	890
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	3 cut(s)	97, 209, 219
XagI	CCTNNNNNAGG	3 cut(s)	16, 385, 665
XbaI	TCTAGA	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	435
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	885
XspI	CTAG	5 cut(s)	63, 503, 525, 1052, 1117
ZrmI	AGTACT	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.