Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Reverse (-)

7279023 .. 7281005

Gene Structure 1983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0093200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGTTCTGGAGGTTGTACCAATGATATTTTGGAATTCGAAGAACAATCTCCAAAATCTTGTGAAAATTTGGACAAGGCTAAGGTTGGGGAGCCGCAAAAGGATGGTGCTGAGCCACAAGCTGAATTAGGGCCTATTACTCCTGAAGCTGACCGAGAGAATGGGGAATCCCAACCAACATTTTTGAAGAAACCCCCAGTTTTAACTGTCAAGTCCAATAGAGATGGGGATGACCCTTTTGGTCTTTCTGATGATAGCAGCGGCAGCCCCAGGACACCTGAGGATGGAGTTTTTGATCCCTTTGCCCCTGGTCCGGAGAAGCTGGCAATGGCGCCTATGTGTAAGAAGTTTGTCAGCAAGTCGAGGAGTGTGGTTGCTCGTCAGCTGAGTTTTGATTCTCCGGTACAAATTTCAGAAGATGAGATTTCTACCAATGGTGTGGAGTCCCTTTCGGACGAAGAAATATTTGAAGCTGTGTATGAAAATTTATTGGAAGCTATTGTATCTGATCTGACTCTCAGTGTTCTTGGTGAACGTGCAAGGAAGGATTGGGACTGTGGTGATGACTGTACAACACCTCCTGGAACTCGGCTAACTGGAATTGCTGAAACCTGTCCCGGTGCTCCCTTGAGGCCCTCTGGGAAATCAAGGAAGATTGATTTGGGCTTAATCAGAAAGCTCGAATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0002832 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0031347 GO:0031348 GO:0032101 GO:0032102 GO:0042578 GO:0043900 GO:0043901 GO:0044237 GO:0044424 GO:0044464 GO:0048519 GO:0048583 GO:0048585 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0071944 GO:0080134 GO:1900055 GO:1900056 GO:1900424 GO:1900425 GO:1905622 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

229

Amino Acids

24.66

Weight (kDa)

4.46

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	2 cut(s)	95, 261
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	5 cut(s)	35, 67, 408, 484, 683
AcuI	CTGAAG	1 cut(s)	165
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	19, 405, 571
AfiI	CCNNNNNNNGG	2 cut(s)	284, 313
AgsI	TTSAA	2 cut(s)	187, 470
AjnI	CCWGG	3 cut(s)	269, 307, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	7 cut(s)	122, 149, 322, 385, 473, 497, 679
AluI	AGCT	7 cut(s)	122, 149, 322, 385, 473, 497, 679
Alw21I	GWGCWC	1 cut(s)	625
AlwI	GGATC	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	2 cut(s)	131, 632
ApeKI	GCWGC	2 cut(s)	258, 264
ApoI	RAATTY	5 cut(s)	35, 67, 408, 484, 683
AspLEI	GCGC	1 cut(s)	334
AspS9I	GGNCC	3 cut(s)	131, 311, 633
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	2 cut(s)	542, 572
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	311
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	625
BbvI	GCAGC	2 cut(s)	270, 276
BccI	CCATC	3 cut(s)	98, 218, 278
BciT130I	CCWGG	3 cut(s)	271, 309, 582
BcnI	CCSGG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	335
BisI	GCNGC	4 cut(s)	95, 259, 262, 265
BlpI	GCTNAGC	1 cut(s)	111
BlsI	GCNGC	4 cut(s)	96, 260, 263, 266
Bme1390I	CCNGG	4 cut(s)	271, 309, 582, 618
Bme18I	GGWCC	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	131, 311, 633
BmiI	GGNNCC	2 cut(s)	93, 333
BmrFI	CCNGG	4 cut(s)	271, 309, 582, 618
BmrI	ACTGGG	1 cut(s)	191
BmuI	ACTGGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu1102I	GCTNAGC	1 cut(s)	111
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	649
BpuMI	CCSGG	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	269, 307
BsaWI	WCCGGW	2 cut(s)	313, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	284, 313
Bse1I	ACTGG	2 cut(s)	197, 601
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	333
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	3 cut(s)	271, 309, 582
BseDI	CCNNGG	2 cut(s)	269, 307
BseGI	GGATG	3 cut(s)	109, 235, 289
BseLI	CCNNNNNNNGG	2 cut(s)	284, 313
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	4 cut(s)	102, 270, 377, 532
BseNI	ACTGG	2 cut(s)	197, 601
BseRI	GAGGAG	1 cut(s)	379
BseXI	GCAGC	2 cut(s)	270, 276
BshFI	GGCC	2 cut(s)	133, 634
BshNI	GGYRCC	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	625
BsiSI	CCGG	3 cut(s)	314, 401, 618
BslFI	GGGAC	3 cut(s)	430, 566, 600
BslI	CCNNNNNNNGG	2 cut(s)	284, 313
BsmFI	GGGAC	3 cut(s)	430, 566, 600
BsnI	GGCC	2 cut(s)	133, 634
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp13I	TCCGGA	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	569
Bsp143I	GATC	2 cut(s)	295, 508
Bsp1720I	GCTNAGC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	95, 261
BspANI	GGCC	2 cut(s)	133, 634
BspCNI	CTCAG	4 cut(s)	103, 271, 378, 531
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	2 cut(s)	93, 333
BspPI	GGATC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	331
BsrDI	GCAATG	1 cut(s)	333
BsrGI	TGTACA	1 cut(s)	569
BsrI	ACTGG	2 cut(s)	197, 601
BssECI	CCNNGG	2 cut(s)	269, 307
BssMI	GATC	2 cut(s)	295, 508
BssNI	GRCGYC	1 cut(s)	332
Bst2UI	CCWGG	3 cut(s)	271, 309, 582
Bst4CI	ACNGT	3 cut(s)	208, 557, 569
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	5 cut(s)	81, 111, 279, 386, 518
BstF5I	GGATG	3 cut(s)	109, 235, 289
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	334
BstKTI	GATC	2 cut(s)	298, 511
BstMBI	GATC	2 cut(s)	295, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	3 cut(s)	271, 309, 582
BstSCI	CCNGG	4 cut(s)	269, 307, 580, 616
BstV1I	GCAGC	2 cut(s)	270, 276
BstXI	CCANNNNNNTGG	1 cut(s)	439
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	133, 634
BtsCI	GGATG	3 cut(s)	109, 235, 289
BtsIMutI	CAGTG	1 cut(s)	526
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	334
Cfr13I	GGNCC	3 cut(s)	131, 311, 633
Csp6I	GTAC	3 cut(s)	18, 404, 570
CviQI	GTAC	3 cut(s)	18, 404, 570
DdeI	CTNAG	5 cut(s)	81, 111, 279, 386, 518
DinI	GGCGCC	1 cut(s)	333
DpnI	GATC	2 cut(s)	297, 510
DpnII	GATC	2 cut(s)	295, 508
Eco47I	GGWCC	1 cut(s)	311
Eco57I	CTGAAG	1 cut(s)	165
Eco81I	CCTNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	2 cut(s)	131, 633
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	3 cut(s)	269, 307, 580
EgeI	GGCGCC	1 cut(s)	333
EheI	GGCGCC	1 cut(s)	333
FaiI	YATR	2 cut(s)	338, 480
FaqI	GGGAC	3 cut(s)	430, 566, 600
Fnu4HI	GCNGC	4 cut(s)	95, 259, 262, 265
FokI	GGATG	3 cut(s)	116, 242, 296
Fsp4HI	GCNGC	4 cut(s)	95, 259, 262, 265
GlaI	GCGC	1 cut(s)	333
GluI	GCNGC	4 cut(s)	95, 259, 262, 265
GsuI	CTGGAG	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	133, 634
HapII	CCGG	3 cut(s)	314, 401, 618
HhaI	GCGC	1 cut(s)	334
Hin1I	GRCGYC	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	332
HinP1I	GCGC	1 cut(s)	332
HinfI	GANTC	4 cut(s)	167, 395, 443, 514
HpaII	CCGG	3 cut(s)	314, 401, 618
HphI	GGTGA	2 cut(s)	542, 572
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	6 cut(s)	250, 415, 454, 508, 513, 674
Hpy188III	TCNNGA	3 cut(s)	9, 143, 314
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	3 cut(s)	208, 557, 569
HpyCH4IV	ACGT	1 cut(s)	535
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	5 cut(s)	81, 111, 279, 386, 518
HpySE526I	ACGT	1 cut(s)	535
Hsp92I	GRCGYC	1 cut(s)	332
HspAI	GCGC	1 cut(s)	332
KasI	GGCGCC	1 cut(s)	331
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	2 cut(s)	295, 508
LmnI	GCTCC	2 cut(s)	91, 628
Lsp1109I	GCAGC	2 cut(s)	270, 276
MaeII	ACGT	1 cut(s)	535
MalI	GATC	2 cut(s)	297, 510
MboI	GATC	2 cut(s)	295, 508
MboII	GAAGA	5 cut(s)	53, 199, 428, 470, 664
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	7 cut(s)	35, 67, 125, 408, 484, 600, 683
Mly113I	GGCGCC	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	452, 508
MnlI	CCTC	6 cut(s)	5, 274, 357, 588, 624, 646
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	3 cut(s)	203, 668, 688
MspA1I	CMGCKG	2 cut(s)	261, 385
MspI	CCGG	3 cut(s)	314, 401, 618
MspR9I	CCNGG	4 cut(s)	271, 309, 582, 618
MvaI	CCWGG	3 cut(s)	271, 309, 582
MwoI	GCNNNNNNNGC	1 cut(s)	264
NarI	GGCGCC	1 cut(s)	332
NciI	CCSGG	1 cut(s)	618
NdeII	GATC	2 cut(s)	295, 508
NlaIV	GGNNCC	2 cut(s)	93, 333
NmeAIII	GCCGAG	1 cut(s)	568
NspV	TTCGAA	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	167, 395
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	4 cut(s)	96, 260, 263, 266
PleI	GAGTC	2 cut(s)	451, 508
PluTI	GGCGCC	1 cut(s)	335
PpsI	GAGTC	2 cut(s)	451, 508
Psp6I	CCWGG	3 cut(s)	269, 307, 580
PspGI	CCWGG	3 cut(s)	269, 307, 580
PspN4I	GGNNCC	2 cut(s)	93, 333
PspPI	GGNCC	3 cut(s)	131, 311, 633
PvuII	CAGCTG	1 cut(s)	385
RsaI	GTAC	3 cut(s)	19, 405, 571
RsaNI	GTAC	3 cut(s)	18, 404, 570
SaqAI	TTAA	3 cut(s)	203, 668, 688
SatI	GCNGC	4 cut(s)	95, 259, 262, 265
Sau3AI	GATC	2 cut(s)	295, 508
Sau96I	GGNCC	3 cut(s)	131, 311, 633
SchI	GAGTC	2 cut(s)	452, 508
ScrFI	CCNGG	4 cut(s)	271, 309, 582, 618
SduI	GDGCHC	1 cut(s)	625
SfoI	GGCGCC	1 cut(s)	333
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	7 cut(s)	35, 67, 125, 408, 484, 600, 683
SsiI	CCGC	2 cut(s)	95, 261
SspDI	GGCGCC	1 cut(s)	331
SspI	AATATT	1 cut(s)	465
StyD4I	CCNGG	4 cut(s)	269, 307, 580, 616
TaaI	ACNGT	3 cut(s)	208, 557, 569
TaiI	ACGT	1 cut(s)	538
TaqI	TCGA	3 cut(s)	39, 362, 681
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	7 cut(s)	35, 67, 125, 408, 484, 600, 683
TatI	WGTACW	1 cut(s)	569
TauI	GCSGC	2 cut(s)	97, 264
TfiI	GAWTC	2 cut(s)	167, 395
Tru1I	TTAA	3 cut(s)	203, 668, 688
Tru9I	TTAA	3 cut(s)	203, 668, 688
TscAI	CASTG	1 cut(s)	526
TseI	GCWGC	2 cut(s)	258, 264
TspDTI	ATGAA	1 cut(s)	495
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	5 cut(s)	35, 67, 408, 484, 683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.