Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Reverse (-)

20502034 .. 20503856

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1129800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACAGCTACTACTGGCATGGAAGATGAAAAATGGAGTGACAAGATGGAAGGAGATGGTGGTTTGAGGACTTTGGAGTGCCTCAGAGGGAGACTGCTGGCGGAGAGGCAAGCTTCAAGGGTTGCAAAAGAGGATGCAGAACTAATTGGCAAGAAGTTAATAGAACTACAGAAGCAGCTCAAAGAAGAGATCAAACTAAAGGAAAAAGCAGAAAAGAAGCTCAATTGTTTGAAGAAAAAGCTTGAATCTTTGAATAATTCCTCCAAAAATAGTGAAAAATCTTATACACAATCCACTACCACTTCATCAGGATCCAATCATCCAGAAACCCATGAAGCCAAATCCAAAGTTGCAGAGTCAGAAATCCCAGAGGAATCAAGACAAAATGCAGCAGACTCCACCACATCTGAGCAAAGCCATGAAAGCACTTTCACTGATGAAAACACTTCTTCTCAAAGCACTTCTGGTTCCAGTTCTAGTTCCAGCATAGAATGTTCTTCTTCCCCAAAAGGGTTCTGCCACAACCCAAGTCATAAATCTGAAGATCCAAAGATTGAAGATAGTAATAGGTATAGATTGAAAATGGTGATTTGGGGGGGTTATTATGTTGATAACACACTTGCATTAGTACCTGTGAATATGCCTGCCACCTGTCACACCAGCACTGAATTGAAGCCAGTTGGTGAAAATCTTAGGCAAGTTCTTGATGCCCTAAGGAACACCAGAGAAAATCTTCAAAGATCCATGGAGAAGAGGCATATGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

28.47

Weight (kDa)

6.42

Isoelectric Point (pI)

69.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	4 cut(s)	306, 319, 539, 735
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	1 cut(s)	510
AgsI	TTSAA	8 cut(s)	117, 232, 245, 253, 557, 580, 673, 737
AluBI	AGCT	5 cut(s)	8, 113, 178, 220, 241
AluI	AGCT	5 cut(s)	8, 113, 178, 220, 241
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	4 cut(s)	306, 319, 539, 735
ApeKI	GCWGC	2 cut(s)	175, 389
Asp700I	GAANNNNTTC	1 cut(s)	732
AsuHPI	GGTGA	2 cut(s)	598, 695
AxyI	CCTNAGG	1 cut(s)	713
BamHI	GGATCC	1 cut(s)	311
BbvI	GCAGC	2 cut(s)	187, 401
BccI	CCATC	2 cut(s)	40, 50
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	176, 390
BlsI	GCNGC	2 cut(s)	177, 391
BmiI	GGNNCC	2 cut(s)	313, 469
BmsI	GCATC	2 cut(s)	124, 697
BsaJI	CCNNGG	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	1 cut(s)	510
Bse1I	ACTGG	3 cut(s)	19, 471, 677
Bse21I	CCTNAGG	1 cut(s)	713
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	2 cut(s)	139, 319
BseLI	CCNNNNNNNGG	1 cut(s)	510
BseMII	CTCAG	2 cut(s)	97, 399
BseNI	ACTGG	3 cut(s)	19, 471, 677
BseXI	GCAGC	2 cut(s)	187, 401
BslI	CCNNNNNNNGG	1 cut(s)	510
BsmAI	GTCTC	1 cut(s)	85
Bsp143I	GATC	4 cut(s)	189, 311, 544, 740
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	2 cut(s)	96, 400
BspLI	GGNNCC	2 cut(s)	313, 469
BspPI	GGATC	4 cut(s)	306, 319, 539, 735
BsrI	ACTGG	3 cut(s)	19, 471, 677
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	4 cut(s)	189, 311, 544, 740
BssT1I	CCWWGG	1 cut(s)	744
Bst6I	CTCTTC	2 cut(s)	180, 746
BstC8I	GCNNGC	3 cut(s)	99, 111, 645
BstDEI	CTNAG	4 cut(s)	83, 408, 692, 713
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	139, 319
BstKTI	GATC	4 cut(s)	192, 314, 547, 743
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	4 cut(s)	189, 311, 544, 740
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstSFI	CTRYAG	1 cut(s)	167
BstV1I	GCAGC	2 cut(s)	187, 401
BstX2I	RGATCY	3 cut(s)	311, 544, 740
BstYI	RGATCY	3 cut(s)	311, 544, 740
Bsu36I	CCTNAGG	1 cut(s)	713
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	139, 319
BtsIMutI	CAGTG	2 cut(s)	432, 663
Cac8I	GCNNGC	3 cut(s)	99, 111, 645
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	4 cut(s)	19, 332, 419, 745
CviJI	RGCY	8 cut(s)	8, 113, 178, 220, 241, 338, 417, 676
CviKI_1	RGCY	8 cut(s)	8, 113, 178, 220, 241, 338, 417, 676
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	4 cut(s)	83, 408, 692, 713
DpnI	GATC	4 cut(s)	191, 313, 546, 742
DpnII	GATC	4 cut(s)	189, 311, 544, 740
Eam1104I	CTCTTC	2 cut(s)	180, 746
EarI	CTCTTC	2 cut(s)	180, 746
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	744
Eco57I	CTGAAG	1 cut(s)	561
Eco81I	CCTNAGG	1 cut(s)	713
EcoT14I	CCWWGG	1 cut(s)	744
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	4 cut(s)	22, 335, 422, 748
FatI	CATG	4 cut(s)	18, 331, 418, 744
FauNDI	CATATG	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	176, 390
FokI	GGATG	2 cut(s)	146, 306
Fsp4HI	GCNGC	2 cut(s)	176, 390
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	2 cut(s)	176, 390
Hin1II	CATG	4 cut(s)	22, 335, 422, 748
HindIII	AAGCTT	2 cut(s)	111, 239
HinfI	GANTC	4 cut(s)	245, 356, 374, 395
HphI	GGTGA	2 cut(s)	598, 695
Hpy188I	TCNGA	4 cut(s)	86, 361, 409, 541
Hpy188III	TCNNGA	4 cut(s)	309, 323, 378, 704
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	5 cut(s)	125, 137, 353, 389, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	4 cut(s)	83, 408, 692, 713
Hsp92II	CATG	4 cut(s)	22, 335, 422, 748
Kzo9I	GATC	4 cut(s)	189, 311, 544, 740
Lsp1109I	GCAGC	2 cut(s)	187, 401
LweI	GCATC	2 cut(s)	124, 697
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	38, 653
MalI	GATC	4 cut(s)	191, 313, 546, 742
MboI	GATC	4 cut(s)	189, 311, 544, 740
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	3 cut(s)	311, 544, 740
MluCI	AATT	4 cut(s)	144, 223, 256, 668
MlyI	GAGTC	2 cut(s)	365, 389
MnlI	CCTC	8 cut(s)	60, 80, 92, 99, 124, 271, 364, 747
MroXI	GAANNNNTTC	1 cut(s)	732
MseI	TTAA	1 cut(s)	158
MunI	CAATTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	423
NcoI	CCATGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	4 cut(s)	189, 311, 544, 740
NlaIII	CATG	4 cut(s)	22, 335, 422, 748
NlaIV	GGNNCC	2 cut(s)	313, 469
NmuCI	GTSAC	2 cut(s)	38, 653
PdmI	GAANNNNTTC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	245, 374
PkrI	GCNGC	2 cut(s)	177, 391
PleI	GAGTC	2 cut(s)	364, 389
PpsI	GAGTC	2 cut(s)	364, 389
PspN4I	GGNNCC	2 cut(s)	313, 469
PsuI	RGATCY	3 cut(s)	311, 544, 740
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	176, 390
Sau3AI	GATC	4 cut(s)	189, 311, 544, 740
SchI	GAGTC	2 cut(s)	365, 389
SetI	ASST	8 cut(s)	10, 115, 180, 222, 243, 572, 634, 653
SfaNI	GCATC	2 cut(s)	124, 697
SfcI	CTRYAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	144, 223, 256, 668
SsiI	CCGC	1 cut(s)	101
SspMI	CTAG	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	744
TasI	AATT	4 cut(s)	144, 223, 256, 668
TfiI	GAWTC	2 cut(s)	245, 374
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	2 cut(s)	439, 670
TseFI	GTSAC	2 cut(s)	38, 653
TseI	GCWGC	2 cut(s)	175, 389
Tsp45I	GTSAC	2 cut(s)	38, 653
TspDTI	ATGAA	5 cut(s)	42, 294, 348, 435, 453
TspRI	CASTG	2 cut(s)	439, 670
XmnI	GAANNNNTTC	1 cut(s)	732
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.