Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005102

Physical Location & Seq

Genomic Coordinates Reverse (-)

35943897 .. 35945271

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024448

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGATTGCTACTAGCAAGGAAGATGGGAAATTGAGTGATAGGAAAATGGAAGGAGATGAGGGTATGAGGACATTGGAGTGCCTAAGAGGAAGACTACTGGCAGAGAGACAAGCTTCAAGGTTGGCAAAAGAGGATGCCGAATCCATGGCCAAGAAGTTGACAGAGCTACAGAACAGGCTGAAAGAAGAGACGAAATTGAAGAACAAAGCTGAAAAGAAGCTCAAATTCTTGAAGACAAAGCTTGAATCTTTGAAACCTTCTTCTGTACCAGTTGAATCAGAACAGTCAAGTTCCTCCGAATATAGTGAAACATCTAGAAGGCAATCCACAAGTACTTCAAGCTCCAATAACCCAGAAGACAATGAGCCCAAGCCCACATTCAAAGACTCAAACTTCTCAGGAACATGCAGTCAAAATCAAGTAGCGAAGTCCACCACATCTGAGAAAAGTCATGAGAGTGATCTTTTCACTGAAGAAAATTCAACCGCTCAAAGTACTAGTCCTGCTTCCAGTTCCACTTCTAGCTTAGAATTTCCTTCCCCAGAATACTCGGGTCATAAATCTGAAGATTCAAAGAGTGGTGATCATATTAGTTACTCAAACCTAAAGTCTTCAGTGGAAAAGATTGAGAATGAGAATGGGAACTTGGATTATGTTGATAACAAACTTGCATTAGTTCCTGTGGTTATGCCTGCTACCTCTCACACCAGTACAACTGACCTGAAGCCGGTCCTGAAGCCGGTCAGTGCAAGTGTTAGAGAAGTTCTTGATGTTCTAAGGCAAATCAGAGAAAATATTCAAAGCTCAATGGAGAAAAGGCACATGACTATAGTAACTGGCCCAACTGATCAAACTCAAACATGCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

290

Amino Acids

31.97

Weight (kDa)

6.07

Isoelectric Point (pI)

61.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300 AT2G37300
fragaria_vesca	FvH4_6g14910 FvH4_6g14910 FvH4_6g14910
malus_domestica	MD04G1111000.v1.1 MD12G1129800.v1.1
prunus_persica	Prupe.6G245100_v2.0.a1
pyrus_communis	pycom04g10420 pycom12g12600
rosa_chinensis	RchiOBHm_Chr3g0468111
rosa_laevigata	RLG00000024448
rosa_multiflora	Rmu_sc0003659.1_g000013
rosa_roxburghii	Rroxscaffold_6G00413020
rosa_rugosa	Rorug03G0092800 Rorug03G0092900 Rorug03G0093000 Rorug03G0093100 Rorug03G0093200 Rorug03G0093200 Rorug03G0093200
rosa_samantha	Rh3AG141200 Rh3BG162700 Rh3CG162600 Rh3DG163200
rosa_wichuraiana	Rw3G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	488
AciI	CCGC	1 cut(s)	486
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	224, 478, 530
AcuI	CTGAAG	5 cut(s)	492, 585, 597, 743, 755
AfaI	GTAC	4 cut(s)	267, 334, 496, 712
AfiI	CCNNNNNNNGG	2 cut(s)	727, 739
AhlI	ACTAGT	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	4 cut(s)	362, 394, 629, 661
AluBI	AGCT	8 cut(s)	113, 166, 209, 220, 241, 342, 525, 804
AluI	AGCT	8 cut(s)	113, 166, 209, 220, 241, 342, 525, 804
Alw26I	GTCTC	2 cut(s)	100, 182
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	2 cut(s)	147, 838
ApoI	RAATTY	3 cut(s)	224, 478, 530
ArsI	GACNNNNNNTTYG	4 cut(s)	484, 516, 593, 625
Asp700I	GAANNNNTTC	1 cut(s)	795
AspS9I	GGNCC	2 cut(s)	730, 839
AsuHPI	GGTGA	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	730
BalI	TGGCCA	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	369
BbsI	GAAGAC	4 cut(s)	97, 239, 363, 603
BccI	CCATC	1 cut(s)	17
BclI	TGATCA	2 cut(s)	583, 847
BcoDI	GTCTC	2 cut(s)	100, 182
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	4 cut(s)	12, 315, 498, 522
BfmI	CTRYAG	2 cut(s)	167, 828
BmcAI	AGTACT	2 cut(s)	334, 496
Bme18I	GGWCC	1 cut(s)	730
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	2 cut(s)	730, 839
BmsI	GCATC	1 cut(s)	124
BpiI	GAAGAC	4 cut(s)	97, 239, 363, 603
BsaJI	CCNNGG	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	2 cut(s)	727, 739
Bse118I	RCCGGY	2 cut(s)	727, 739
Bse1I	ACTGG	5 cut(s)	102, 269, 510, 708, 841
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	727, 739
BseMII	CTCAG	2 cut(s)	411, 432
BseNI	ACTGG	5 cut(s)	102, 269, 510, 708, 841
BshFI	GGCC	2 cut(s)	149, 840
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	2 cut(s)	728, 740
BslI	CCNNNNNNNGG	2 cut(s)	727, 739
BsmAI	GTCTC	2 cut(s)	100, 182
BsmBI	CGTCTC	1 cut(s)	182
BsnI	GGCC	2 cut(s)	149, 840
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	460, 583, 847
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	2 cut(s)	149, 840
BspCNI	CTCAG	2 cut(s)	410, 433
BspHI	TCATGA	1 cut(s)	451
BsrBI	CCGCTC	1 cut(s)	488
BsrFI	RCCGGY	2 cut(s)	727, 739
BsrI	ACTGG	5 cut(s)	102, 269, 510, 708, 841
BssAI	RCCGGY	2 cut(s)	727, 739
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	3 cut(s)	460, 583, 847
BssT1I	CCWWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	180
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	5 cut(s)	83, 397, 441, 526, 776
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	463, 586, 850
BstMAI	GTCTC	2 cut(s)	100, 182
BstMBI	GATC	3 cut(s)	460, 583, 847
BstNSI	RCATGY	2 cut(s)	408, 864
BstSFI	CTRYAG	2 cut(s)	167, 828
BstV2I	GAAGAC	4 cut(s)	97, 239, 363, 603
BsuRI	GGCC	2 cut(s)	149, 840
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	3 cut(s)	468, 621, 751
Cac8I	GCNNGC	1 cut(s)	693
CciI	TCATGA	1 cut(s)	451
Cfr10I	RCCGGY	2 cut(s)	727, 739
Cfr13I	GGNCC	2 cut(s)	730, 839
Csp6I	GTAC	4 cut(s)	266, 333, 495, 711
CviAII	CATG	5 cut(s)	145, 405, 452, 823, 861
CviQI	GTAC	4 cut(s)	266, 333, 495, 711
DdeI	CTNAG	5 cut(s)	83, 397, 441, 526, 776
DpnI	GATC	3 cut(s)	462, 585, 849
DpnII	GATC	3 cut(s)	460, 583, 847
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	730
Eco57I	CTGAAG	5 cut(s)	492, 585, 597, 743, 755
Eco88I	CYCGRG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	5 cut(s)	148, 408, 455, 826, 864
FatI	CATG	5 cut(s)	144, 404, 451, 822, 860
FbaI	TGATCA	2 cut(s)	583, 847
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	369
FspBI	CTAG	4 cut(s)	12, 315, 498, 522
HaeIII	GGCC	2 cut(s)	149, 840
HapII	CCGG	2 cut(s)	728, 740
Hin1II	CATG	5 cut(s)	148, 408, 455, 826, 864
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	2 cut(s)	111, 239
HinfI	GANTC	5 cut(s)	140, 245, 275, 386, 569
HpaII	CCGG	2 cut(s)	728, 740
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	2 cut(s)	159, 432
Hpy188I	TCNGA	5 cut(s)	280, 298, 442, 565, 788
Hpy188III	TCNNGA	6 cut(s)	229, 315, 399, 452, 733, 767
Hpy8I	GTNNAC	2 cut(s)	159, 432
HpyAV	CCTTC	4 cut(s)	44, 267, 312, 546
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	4 cut(s)	408, 671, 749, 864
HpyF3I	CTNAG	5 cut(s)	83, 397, 441, 526, 776
Hsp92II	CATG	5 cut(s)	148, 408, 455, 826, 864
Ksp22I	TGATCA	2 cut(s)	583, 847
Kzo9I	GATC	3 cut(s)	460, 583, 847
LmnI	GCTCC	1 cut(s)	347
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	4 cut(s)	12, 315, 498, 522
MaeIII	GTNAC	2 cut(s)	593, 832
MalI	GATC	3 cut(s)	462, 585, 849
MbiI	CCGCTC	1 cut(s)	488
MboI	GATC	3 cut(s)	460, 583, 847
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	5 cut(s)	29, 194, 224, 478, 530
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	380
MnlI	CCTC	6 cut(s)	52, 60, 80, 124, 304, 709
Mox20I	TGGCCA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	149
MslI	CAYNNNNRTG	2 cut(s)	76, 456
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	2 cut(s)	728, 740
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	460, 583, 847
NlaIII	CATG	5 cut(s)	148, 408, 455, 826, 864
NspI	RCATGY	2 cut(s)	408, 864
PagI	TCATGA	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	4 cut(s)	140, 245, 275, 569
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PspPI	GGNCC	2 cut(s)	730, 839
RsaI	GTAC	4 cut(s)	267, 334, 496, 712
RsaNI	GTAC	4 cut(s)	266, 333, 495, 711
RseI	CAYNNNNRTG	2 cut(s)	76, 456
Sau3AI	GATC	3 cut(s)	460, 583, 847
Sau96I	GGNCC	2 cut(s)	730, 839
ScaI	AGTACT	2 cut(s)	334, 496
SchI	GAGTC	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	2 cut(s)	167, 828
SinI	GGWCC	1 cut(s)	730
SmiMI	CAYNNNNRTG	2 cut(s)	76, 456
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	5 cut(s)	29, 194, 224, 478, 530
SsiI	CCGC	1 cut(s)	486
SspI	AATATT	1 cut(s)	796
SspMI	CTAG	4 cut(s)	12, 315, 498, 522
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	285
TasI	AATT	5 cut(s)	29, 194, 224, 478, 530
TatI	WGTACW	3 cut(s)	332, 494, 710
TfiI	GAWTC	4 cut(s)	140, 245, 275, 569
TscAI	CASTG	3 cut(s)	475, 621, 751
TspRI	CASTG	3 cut(s)	475, 621, 751
VpaK11BI	GGWCC	1 cut(s)	730
XapI	RAATTY	3 cut(s)	224, 478, 530
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	2 cut(s)	408, 864
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	4 cut(s)	12, 315, 498, 522
ZrmI	AGTACT	2 cut(s)	334, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.