Rorug03G0093100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005102
Physical Location & Seq
Forward (+)
7276635 .. 7278131
1497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0093100.1

Sequence Viewer

Length: 609 bp
ATGACAGAAACTGGCACAGACAACAAACCCAACAAGCGAAAGCGCCCGTGTCTCATCGCAATCGGAGTTTTCCTGTTTTTGATTCTTCTAGTCTTCATTATCTGCCTCATACTTGCCTTAACCGTTTTCAAAGCCAAACAGCCGAGAACCTCGGTCGTCTCCTCCAGCGTCGACGGCGTGGCTCAACGTCTCTCATTCCCGGCGGTCAAGATCGAGCTCAACATCACCGTTGATCTTGTAATCCTAATAGAGAATCGGAACCACGCTAGCTTCAAGCATGGGACAGGCAAGAGTTTACTGTCGTATCGAGGAGTTCAGGTTGGAGATGCTGATCTTTACCCCGGCGATATTCCGGCGAGGGGTAATGGTACGCTGCCGGCGAGGCTGACTATGCAGGCGGATCGGCTGGCGTCACAGATGAGCAATTTGGTCACTGATGCATTGAGTGGTGAATTTGTTATCGAAACAAAGTCAAGCATTCCAGGGAGGATTACGTTCTTGGGGTTTATCAAGAAGCATGCTGTTGCTGAATCTGAATGCCAATTGACTATTGGGTTTCCCAACTTGAAGGTCAAGAGTCAAGTCTGCAAAAGCAAGACCAACTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

21.95

Weight (kDa)

9.69

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 82 - 166 3.9e-06 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 2 cut(s) 203, 398
AclWI GGATC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 452
AcyI GRCGYC 1 cut(s) 410
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 130, 274, 568
AjnI CCWGG 1 cut(s) 481
AluBI AGCT 2 cut(s) 217, 270
AluI AGCT 2 cut(s) 217, 270
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 3 cut(s) 56, 163, 194
AlwI GGATC 1 cut(s) 408
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 373
ApoI RAATTY 1 cut(s) 452
AspLEI GCGC 1 cut(s) 45
AsuC2I CCSGG 2 cut(s) 200, 342
AsuHPI GGTGA 2 cut(s) 217, 461
AsuNHI GCTAGC 1 cut(s) 266
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BanII GRGCYC 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 85
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 360
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 1 cut(s) 483
BcnI CCSGG 2 cut(s) 200, 342
BcoDI GTCTC 3 cut(s) 56, 163, 194
BfaI CTAG 2 cut(s) 89, 267
BfoI RGCGCY 1 cut(s) 46
BglI GCCNNNNNGGC 1 cut(s) 382
BisI GCNGC 1 cut(s) 374
BlsI GCNGC 1 cut(s) 375
Bme1390I CCNGG 3 cut(s) 200, 342, 483
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 3 cut(s) 200, 342, 483
BmsI GCATC 2 cut(s) 316, 427
BmtI GCTAGC 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 148
BpuMI CCSGG 2 cut(s) 200, 342
BsaBI GATNNNNATC 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 150, 340, 482
BsaXI ACNNNNNCTCC 2 cut(s) 303, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 330
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 3 cut(s) 150, 340, 482
BseJI GATNNNNATC 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 359
BseNI ACTGG 1 cut(s) 16
BseRI GAGGAG 2 cut(s) 151, 324
BseXI GCAGC 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 4 cut(s) 200, 342, 353, 377
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 3 cut(s) 56, 163, 194
BsmBI CGTCTC 2 cut(s) 163, 194
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 2 cut(s) 477, 542
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 4 cut(s) 210, 232, 331, 400
BspACI CCGC 2 cut(s) 203, 398
BspLI GGNNCC 1 cut(s) 260
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 1 cut(s) 408
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 16
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 150, 340, 482
BssMI GATC 4 cut(s) 210, 232, 331, 400
BssNI GRCGYC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 3 cut(s) 124, 229, 300
BstACI GRCGYC 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 268, 378, 396, 408, 519
BstH2I RGCGCY 1 cut(s) 46
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 4 cut(s) 213, 235, 334, 403
BstMAI GTCTC 3 cut(s) 56, 163, 194
BstMBI GATC 4 cut(s) 210, 232, 331, 400
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 3 cut(s) 174, 382, 391
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 198, 340, 481
BstV1I GCAGC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 85
BtgZI GCGATG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 5 cut(s) 268, 378, 396, 408, 519
CaiI CAGNNNCTG 1 cut(s) 11
CfoI GCGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 376
CseI GACGC 2 cut(s) 157, 399
Csp6I GTAC 1 cut(s) 369
CviAII CATG 2 cut(s) 278, 518
CviJI RGCY 7 cut(s) 134, 142, 182, 217, 270, 385, 406
CviKI_1 RGCY 7 cut(s) 134, 142, 182, 217, 270, 385, 406
CviQI GTAC 1 cut(s) 369
DpnI GATC 4 cut(s) 212, 234, 333, 402
DpnII GATC 4 cut(s) 210, 232, 331, 400
EciI GGCGGA 1 cut(s) 413
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 481
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 219
Esp3I CGTCTC 2 cut(s) 163, 194
FaeI CATG 2 cut(s) 281, 521
FaiI YATR 5 cut(s) 110, 279, 392, 519, 607
FalI AAGNNNNNCTT 1 cut(s) 587
FaqI GGGAC 1 cut(s) 295
FatI CATG 2 cut(s) 277, 517
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 374
FriOI GRGCYC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 374
FspBI CTAG 2 cut(s) 89, 267
GlaI GCGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 148
HaeII RGCGCY 1 cut(s) 46
HapII CCGG 4 cut(s) 200, 342, 353, 377
HgaI GACGC 2 cut(s) 157, 399
HhaI GCGC 1 cut(s) 45
Hin1I GRCGYC 1 cut(s) 410
Hin1II CATG 2 cut(s) 281, 521
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 4 cut(s) 82, 253, 530, 577
HpaII CCGG 4 cut(s) 200, 342, 353, 377
HphI GGTGA 2 cut(s) 217, 461
Hpy166II GTNNAC 2 cut(s) 172, 296
Hpy188I TCNGA 3 cut(s) 65, 258, 535
Hpy188III TCNNGA 3 cut(s) 208, 511, 574
Hpy8I GTNNAC 2 cut(s) 172, 296
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 3 cut(s) 124, 229, 300
HpyCH4IV ACGT 2 cut(s) 187, 494
HpyCH4V TGCA 3 cut(s) 394, 440, 588
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 382, 391
HpySE526I ACGT 2 cut(s) 187, 494
Hsp92I GRCGYC 1 cut(s) 410
Hsp92II CATG 2 cut(s) 281, 521
HspAI GCGC 1 cut(s) 43
KroI GCCGGC 1 cut(s) 376
KroNI GCCGGC 1 cut(s) 378
Kzo9I GATC 4 cut(s) 210, 232, 331, 400
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 2 cut(s) 316, 427
MaeI CTAG 2 cut(s) 89, 267
MaeII ACGT 2 cut(s) 187, 494
MaeIII GTNAC 2 cut(s) 411, 430
MalI GATC 4 cut(s) 212, 234, 333, 402
MboI GATC 4 cut(s) 210, 232, 331, 400
MboII GAAGA 2 cut(s) 77, 85
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 3 cut(s) 424, 452, 542
MlyI GAGTC 1 cut(s) 586
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 7 cut(s) 116, 160, 172, 302, 351, 375, 480
Mph1103I ATGCAT 1 cut(s) 442
MroNI GCCGGC 1 cut(s) 376
MseI TTAA 1 cut(s) 119
MspI CCGG 4 cut(s) 200, 342, 353, 377
MspR9I CCNGG 3 cut(s) 200, 342, 483
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 2 cut(s) 477, 542
MvaI CCWGG 1 cut(s) 483
MwoI GCNNNNNNNGC 3 cut(s) 174, 382, 391
NaeI GCCGGC 1 cut(s) 378
NciI CCSGG 2 cut(s) 200, 342
NdeII GATC 4 cut(s) 210, 232, 331, 400
NgoMIV GCCGGC 1 cut(s) 376
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 2 cut(s) 281, 521
NlaIV GGNNCC 1 cut(s) 260
NmeAIII GCCGAG 1 cut(s) 168
NmuCI GTSAC 2 cut(s) 411, 430
NsiI ATGCAT 1 cut(s) 442
NspI RCATGY 1 cut(s) 521
PaeI GCATGC 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 377
PctI GAATGC 2 cut(s) 477, 542
PdiI GCCGGC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 82, 253, 530
PkrI GCNGC 1 cut(s) 375
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 1 cut(s) 260
PstNI CAGNNNCTG 1 cut(s) 11
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SacI GAGCTC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 170
SaqAI TTAA 1 cut(s) 119
SatI GCNGC 1 cut(s) 374
Sau3AI GATC 4 cut(s) 210, 232, 331, 400
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 3 cut(s) 200, 342, 483
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 152, 190, 219, 272, 321, 497, 573
SfaNI GCATC 2 cut(s) 316, 427
SgrDI CGTCGACG 1 cut(s) 170
SphI GCATGC 1 cut(s) 521
Sse9I AATT 3 cut(s) 424, 452, 542
SsiI CCGC 2 cut(s) 203, 398
SspMI CTAG 2 cut(s) 89, 267
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 198, 340, 481
TaaI ACNGT 3 cut(s) 124, 229, 300
TaiI ACGT 2 cut(s) 190, 497
TaqI TCGA 4 cut(s) 171, 213, 307, 462
TaqII GACCGA 1 cut(s) 142
TasI AATT 3 cut(s) 424, 452, 542
TfiI GAWTC 3 cut(s) 82, 253, 530
Tru1I TTAA 1 cut(s) 119
Tru9I TTAA 1 cut(s) 119
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 2 cut(s) 411, 430
TseI GCWGC 1 cut(s) 373
Tsp45I GTSAC 2 cut(s) 411, 430
TspDTI ATGAA 1 cut(s) 85
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 452
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 2 cut(s) 89, 267
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.